Clone BO20906 Report

Search the DGRC for BO20906

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:209
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptgfzf-RD
Protein status:BO20906.pep: full length peptide match
Sequenced Size:736

Clone Sequence Records

BO20906.complete Sequence

736 bp assembled on 2009-05-13

GenBank Submission: KX796152

> BO20906.complete
GAAGTTATCAGTCGACATGAAACTCTACGCCGTATCCGATGGTCCGCCTT
CCCTGGCCGTTCGCATGACCCTGAAGGCCTTGGATATACAATATCAACTC
ATCAATGTGGACTTTTGCGCCATGGAACATCGCTCTGAGGAGTACTCGAA
GATGAATCCGCAAAAGGAGATACCCGTGCTGGACGACGACGGTTTCTATC
TATCGGAGAGCATTGCCATTATGCAATACCTCTGCGACAAGTACGCGCCG
GATTCAACGCTATATCCGCAGGACGTCAATGTGAGAGCAGTAATCAATCA
GCGGCTATGCTTTAACATGGGATTCTACTATGCCCCCATATCCGCCCACA
GCATGGCGCCCATTTTCTTCGACTACAAACGTACGCCCATGTCGCTAAAG
AAGGTGCAGAACGCACTTGATGTGTTCGAAACCTATTTGCAGCGACTGGG
CACTAAGTACGCGGCAGGCGAGAACATAACCATTGCAGACTTCGCTCTCA
TTTCGGCCACGATCTGCTTGGAGGCAATTAACTTTGACTTGCACCAGTTT
ACGTTGGTGAACAAGTGGTACGAAACCTTCAAGGTGGAATACCCGCAGCT
GTGGGAGATCGCCAACAGCGGCATGCAGGAGATAAGTGCGTTTGAGCAGA
ACCCACCGGATATGTCACACATGGAACACCCATTCCATCCGACGCGCAAG
TCTATGGGCCTGAAGTTGGCAAGCTTTCTAGACCAT

BO20906.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
gfzf-RE 3138 CG33546-PE 2434..3135 17..718 3510 100 Plus
gfzf-RD 705 CG33546-PD 1..702 17..718 3510 100 Plus
gfzf-RB 3138 CG33546-PB 2434..3135 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
gfzf-RE 3608 CG33546-RE 2772..3473 17..718 3510 100 Plus
gfzf-RD 1200 CG33546-RD 62..763 17..718 3510 100 Plus
gfzf-RB 3910 CG33546-RB 2772..3473 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7146317..7146885 718..150 2845 100 Minus
3R 32079331 3R 7146945..7147079 151..17 675 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:30:44 has no hits.

BO20906.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:06 Download gff for BO20906.complete
Subject Subject Range Query Range Percent Splice Strand
gfzf-RD 59..760 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:12 Download gff for BO20906.complete
Subject Subject Range Query Range Percent Splice Strand
gfzf-RB 2772..3473 17..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:44 Download gff for BO20906.complete
Subject Subject Range Query Range Percent Splice Strand
gfzf-RB 2772..3473 17..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:44 Download gff for BO20906.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7146315..7146883 152..720 99 <- Minus
3R 7146945..7147079 17..151 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:12 Download gff for BO20906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2972037..2972605 152..720 99 <- Minus
arm_3R 2972667..2972801 17..151 100   Minus

BO20906.pep Sequence

Translation from 16 to 736

> BO20906.pep
MKLYAVSDGPPSLAVRMTLKALDIQYQLINVDFCAMEHRSEEYSKMNPQK
EIPVLDDDGFYLSESIAIMQYLCDKYAPDSTLYPQDVNVRAVINQRLCFN
MGFYYAPISAHSMAPIFFDYKRTPMSLKKVQNALDVFETYLQRLGTKYAA
GENITIADFALISATICLEAINFDLHQFTLVNKWYETFKVEYPQLWEIAN
SGMQEISAFEQNPPDMSHMEHPFHPTRKSMGLKLASFLDH

BO20906.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
gfzf-PD 234 CG33546-PD 1..234 1..234 1236 100 Plus
gfzf-PE 1045 CG33546-PE 812..1045 1..234 1236 100 Plus
gfzf-PB 1045 CG33546-PB 812..1045 1..234 1236 100 Plus
GstD1-PB 209 CG10045-PB 5..207 4..209 329 36.4 Plus
GstD1-PA 209 CG10045-PA 5..207 4..209 329 36.4 Plus