Clone BO20909 Report

Search the DGRC for BO20909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:209
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptNnf1b-RA
Protein status:BO20909.pep: Imported from assembly
Sequenced Size:646

Clone Sequence Records

BO20909.complete Sequence

646 bp assembled on 2009-05-13

GenBank Submission: KX796165

> BO20909.complete
GAAGTTATCAGTCGACATGAATAATATTGAAGAGGACACCGAAGCAGCCT
TCAAACGGCTCCAGGCTGTCATTCCACAGGTGAAGCAGGCCTACGAGGAA
GCCATTGGACAGATCTTCTCGGATTTAAACTCCTCAGATCTTGAGTCGTG
TGCCTCCATCCTCGAGGAGCACGAATCCACGAGCCTGGACACCGAGCAAA
TAATCCACAGCACCCGTCGGCTTATGACCAAGATCGTCCTGGATGTGAAC
CAGTGCTTCTTCTCCGGCAACGACGTGGAGACCAAGCTGACCACGCTGGA
AATGCTTAAGGAGCAGTTTGCCGCCCACGAGGGCAAGAACTGGAACTTCA
ACTGTCTGTCCCCTGAGGAACTTACTCGCCCTCTGCGCATGCACAACTTG
AATCTAAGCATCACATTCATGGAGCAACAGCTTAAGAAACAGGAAAAGGA
ACTCGAGATTGCTATGGCCAAAAGCATTAAAAATCGACAGCTTATACATG
ATGTCCACGCTGAACGGGTGAAAGTGGGATGTATGATGAAGCAGCAGTTG
GCCGAGTACCAGGCCATTAAGCCACAGTTAATGGAAATGGAACGGCTAAT
AAATGATTCGTATGTGCAGGAAGAAATGGCAAGCTTTCTAGACCAT

BO20909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1b-RA 615 CG31658-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1b-RA 783 CG31658-RA 70..681 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 810809..811022 130..343 1070 100 Plus
2L 23513712 2L 811257..811429 456..628 865 100 Plus
2L 23513712 2L 811088..811203 342..457 580 100 Plus
2L 23513712 2L 810646..810758 17..129 565 100 Plus
Blast to na_te.dros performed 2014-11-27 12:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 3235..3311 24..103 113 65.4 Plus

BO20909.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:34 Download gff for BO20909.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1b-RA 1..612 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:53 Download gff for BO20909.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1b-RA 70..681 17..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:32 Download gff for BO20909.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1b-RA 70..681 17..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:32 Download gff for BO20909.complete
Subject Subject Range Query Range Percent Splice Strand
2L 810646..810758 17..129 100 -> Plus
2L 810809..811021 130..342 100 -> Plus
2L 811089..811203 343..457 100 -> Plus
2L 811259..811429 458..630 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:53 Download gff for BO20909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 810646..810758 17..129 100 -> Plus
arm_2L 810809..811021 130..342 100 -> Plus
arm_2L 811089..811203 343..457 100 -> Plus
arm_2L 811259..811429 458..630 98   Plus

BO20909.pep Sequence

Translation from 16 to 646

> BO20909.pep
MNNIEEDTEAAFKRLQAVIPQVKQAYEEAIGQIFSDLNSSDLESCASILE
EHESTSLDTEQIIHSTRRLMTKIVLDVNQCFFSGNDVETKLTTLEMLKEQ
FAAHEGKNWNFNCLSPEELTRPLRMHNLNLSITFMEQQLKKQEKELEIAM
AKSIKNRQLIHDVHAERVKVGCMMKQQLAEYQAIKPQLMEMERLINDSYV
QEEMASFLDH

BO20909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1b-PA 204 CG31658-PA 1..204 1..204 1035 100 Plus
Nnf1a-PA 194 CG13434-PA 2..193 6..197 574 57.3 Plus