BO20924.complete Sequence
829 bp assembled on 2009-05-13
GenBank Submission: KX795920
> BO20924.complete
GAAGTTATCAGTCGACATGGGAACCATGACCAAGGACTACGACTATCTGC
TAAAGGTTCTACTGGTGGGCGACAGCGATGTGGGCAAGCACGAGATTCTC
TCAAACCTGGAGGATCCCTCCACGGAGAGTCCCTTCTGCAGTGGGAACGA
CTGCACATCTCATATCCTTCAAACGGTAGCCTACAAGACGACCACCATCC
TGCTGGAGGGCAAGCGGGTGAAGCTGCAGCTGTGGGACACCTCCGGCCAG
GGACGCTTCTGCACGATCATTCGCTCCTATTCGCGCGGCGCCCAGGGCAT
CATCCTCGTCTACGACATCACCAACAAGTGGAGCTTCGACGGTATCGATC
GGTGGCTCAAGGAGGTCGACGAGCACGCCCCAGGAATTCCGAAGGTTCTT
GTCGGGAATCGCCTGCACTTGGCCTTCAAGCGACAGGTGGCGGCCAAACA
GGCCGAGACCTACGCCAGCCGCAACAATATGTCCTGCTTCGAGATATCGC
CTCTCTGCAACTTCAACATCCGCGAGTCCTTTTGCGAACTGGCGCGGATG
GCCCTGCATCGCAACGGCATGGAGCACATCTGGCGCAGCAATAAGGTGCT
GTCGCTTCAGGAATTGTGCTGCAGGACAATTGTGCGAAGGACGAGCGTGT
ATGCGATCGATTCGCTGCCGCTGCCGCCGTCGGTGAAGTCGACGCTCAAG
TCATACGCGCTGACCACGTCCCAGTGCTTCAATTCACTGACCCAGAGCTC
CAAGAGCAAGAACCGCTGCAAGACGCCGACGAGCAGCAGTCGGAATAGCT
GTGCGATCGCGGCAAGCTTTCTAGACCAT
BO20924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RB | 798 | CG1900-PB | 1..795 | 17..811 | 3975 | 100 | Plus |
| Rab40-RC | 768 | CG1900-PC | 133..765 | 179..811 | 3165 | 100 | Plus |
| Rab40-RA | 768 | CG1900-PA | 133..765 | 179..811 | 3165 | 100 | Plus |
| Rab40-RC | 768 | CG1900-PC | 1..133 | 17..149 | 665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RB | 1618 | CG1900-RB | 249..1045 | 15..811 | 3985 | 100 | Plus |
| Rab40-RC | 1449 | CG1900-RC | 244..876 | 179..811 | 3165 | 100 | Plus |
| Rab40-RA | 1588 | CG1900-RA | 383..1015 | 179..811 | 3165 | 100 | Plus |
| Rab40-RC | 1449 | CG1900-RC | 110..244 | 15..149 | 675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12460989..12461213 | 596..372 | 1125 | 100 | Minus |
| X | 23542271 | X | 12461456..12461680 | 373..149 | 1125 | 100 | Minus |
| X | 23542271 | X | 12460369..12460584 | 811..596 | 1080 | 100 | Minus |
| X | 23542271 | X | 12461736..12461870 | 149..15 | 675 | 100 | Minus |
| X | 23542271 | X | 20158046..20158165 | 325..206 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:35:32 has no hits.
BO20924.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:33 Download gff for
BO20924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 247..1041 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:37 Download gff for
BO20924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 251..1045 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:05 Download gff for
BO20924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 251..1045 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:05 Download gff for
BO20924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12461736..12461868 | 17..149 | 100 | | Minus |
| X | 12460989..12461211 | 374..596 | 100 | <- | Minus |
| X | 12461456..12461679 | 150..373 | 100 | <- | Minus |
| X | 12460366..12460583 | 597..813 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:37 Download gff for
BO20924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12354399..12354616 | 597..813 | 99 | <- | Minus |
| arm_X | 12355022..12355244 | 374..596 | 100 | <- | Minus |
| arm_X | 12355489..12355712 | 150..373 | 100 | <- | Minus |
| arm_X | 12355769..12355901 | 17..149 | 100 | | Minus |
BO20924.pep Sequence
Translation from 16 to 829
> BO20924.pep
MGTMTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHI
LQTVAYKTTTILLEGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYD
ITNKWSFDGIDRWLKEVDEHAPGIPKVLVGNRLHLAFKRQVAAKQAETYA
SRNNMSCFEISPLCNFNIRESFCELARMALHRNGMEHIWRSNKVLSLQEL
CCRTIVRRTSVYAIDSLPLPPSVKSTLKSYALTTSQCFNSLTQSSKSKNR
CKTPTSSSRNSCAIAASFLDH
BO20924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-PB | 265 | CG1900-PB | 1..265 | 1..265 | 1390 | 100 | Plus |
| Rab40-PC | 255 | CG1900-PC | 1..255 | 1..265 | 1315 | 96.2 | Plus |
| Rab40-PA | 255 | CG1900-PA | 1..255 | 1..265 | 1315 | 96.2 | Plus |
| Rab10-PA | 204 | CG17060-PA | 4..187 | 6..195 | 358 | 42.2 | Plus |
| Rab8-PC | 207 | CG8287-PC | 1..166 | 4..176 | 331 | 41.4 | Plus |
