BO20942.complete Sequence
682 bp assembled on 2009-05-13
GenBank Submission: KX795141
> BO20942.complete
GAAGTTATCAGTCGACATGCGCGTCTACCTGGCCCTGCCGCTCCTGCTGC
TGGGCATCGGCCTCAGTTTGGCCCAGTACCAGTATCAAGCGCCCCACCAA
ACCCTCGCCCAGCAATTCGCCGACGTGGTGGATGTGGTCGATCCTGCAGA
ACAATCTATCAAAGCAGTGCGACCACCGAAGAGCCGCAATCAGTGCACCG
CCAAGCAGAACTGCTTCTGCGGCACTCCGAATGTCAACCGTATCGTGGGC
GGCCAGCAGGTGCGCTCCAACAAGTATCCTTGGACCGCCCAATTGGTAAA
GGGTCGTCATTATCCCCGCCTCTTCTGCGGCGGTTCCCTAATCAATGATC
GCTATGTGCTGACCGCCGCCCATTGTGTGCATGGGAACAGGGATCAGATC
ACCATTCGCCTGCTCCAGATCGACAGATCCTCCCGGGATCCCGGCATTGT
GCGCAAGGTCGTCCAGACCACTGTGCATCCTAACTACGATCCCAACCGGA
TTGTCAACGATGTGGCGCTGCTCAAGCTGGAGTCCCCTGTTCCACTGACT
GGAAACATGCGTCCAGTCTGTCTGCCCGAGGCCAATCATAACTTTGATGG
CAAGACCGTGAGTACAAGTCTTGATTTATGTGCTAAACTGTATTTCCTTT
TATGTAGGCCTGAAGCAAGCTTTCTAGACCAT
BO20942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-RB | 651 | CG3355-PB | 1..648 | 17..664 | 3240 | 100 | Plus |
| CG3355-RA | 945 | CG3355-PA | 1..592 | 17..608 | 2960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-RB | 1399 | CG3355-RB | 88..735 | 17..664 | 3240 | 100 | Plus |
| CG3355-RA | 1096 | CG3355-RA | 36..627 | 17..608 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4651765..4652213 | 216..664 | 2245 | 100 | Plus |
| 2L | 23513712 | 2L | 4651490..4651688 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:46:06 has no hits.
BO20942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:29 Download gff for
BO20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RB | 88..735 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:19 Download gff for
BO20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RB | 88..735 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:28 Download gff for
BO20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RB | 88..735 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:28 Download gff for
BO20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4651490..4651688 | 17..215 | 100 | -> | Plus |
| 2L | 4651765..4652213 | 216..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:19 Download gff for
BO20942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4651490..4651688 | 17..215 | 100 | -> | Plus |
| arm_2L | 4651765..4652213 | 216..666 | 99 | | Plus |
BO20942.pep Sequence
Translation from 16 to 682
> BO20942.pep
MRVYLALPLLLLGIGLSLAQYQYQAPHQTLAQQFADVVDVVDPAEQSIKA
VRPPKSRNQCTAKQNCFCGTPNVNRIVGGQQVRSNKYPWTAQLVKGRHYP
RLFCGGSLINDRYVLTAAHCVHGNRDQITIRLLQIDRSSRDPGIVRKVVQ
TTVHPNYDPNRIVNDVALLKLESPVPLTGNMRPVCLPEANHNFDGKTVST
SLDLCAKLYFLLCRPEASFLDH
BO20942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-PB | 216 | CG3355-PB | 1..216 | 1..216 | 1146 | 100 | Plus |
| CG3355-PA | 314 | CG3355-PA | 1..197 | 1..197 | 1046 | 100 | Plus |
| CG4613-PC | 374 | CG4613-PC | 122..254 | 58..194 | 402 | 56.8 | Plus |
| CG4613-PB | 374 | CG4613-PB | 122..254 | 58..194 | 402 | 56.8 | Plus |
| CG4386-PA | 372 | CG4386-PA | 104..246 | 54..196 | 286 | 40.4 | Plus |
