BO20947.complete Sequence
2374 bp assembled on 2011-03-14
GenBank Submission: KX798587
> BO20947.complete
GAAGTTATCAGTCGACATGATTTCATGCTTAATTAGTAATTATATTATAA
CCATTCTGGTCCTGTGTACAACATCCTATATACACGTTTGTTCGTCGTTA
AATGACCCATACGCTATATTGGGAATAAACAAAAAGGCAACTACATACGA
AATAAGAGAAGCTTACAAGGAATTAGCTAAGAAATGGCATCCTGATAAAG
TTAAAAATGATTACGGTGCCGAAAAGTTCATACAAATTAAACTAGCTTAT
GAAATTCTAGCTGACTTGGATCGACGACGAATTTTTGACCGGTATGGAGT
ATCGGATATTAACTCACAGTATTTTCAGAAGAAACATGATTATAGTGAAT
ATAATCGCTTTACATTAAATCAGAATGATGATGATTTTGGACAACGATTC
GATATAAAACAAGACATTGCATTTTATCAGAAGTTATCAATAACAGAAAA
TTACTTTGAGAAAATGATTTTATCAAAAAATGCAAAAAAAGTGCACGTCG
TCATGTTTTACAATGATTGGTGTTTTAAATGTACTCGAATTGTTGATGCC
TTCAAAAAGATTCTTGAACTACTTCAGCCAATAGGTATTAACTTTGCAAC
GGTTAATGCAGTGCATGAAGAGTCCGTTTTTCGAAAATGTGGCGCCAGAG
AAGTGCCACAACTGGTTTTGATTTTAGACAATCAGTATTTCTTATATCGC
GATCATAGCTTTACCCCACAAAAAGTTGTTGAATTTATACGCAAAAAAAT
ACCATTTAATGTTTTCAAACGCATCGAACATGACAATTTCAATGATTTTC
TGGGAGGATGGAGTGACAACAGAGCAAGGGCTTTAATTTTTGAGCCTCGA
AGTTTAACTAGGTTACGATACCTTCTAACCGCCTTTGAATTTTACGACCG
AGTTGCATTTGGATTTGTGAATACGATTAGTAAGGATTCAAGCAATATAA
TAACTCGGTTTAAGGTCAATACAAGCCTAGATACACTTATTTTATTTAAT
GAGGATACGACGACCTTTACAGCCAGTGTTTGTATGGAAGAAATCCCAAA
TCACATCTTGGTGAATATGGTATCTACTAATCAATTCTTGGCATTTCCTC
GAATATCATCACAGAACATTATGGAAAGTGTGTGCCCAACTGAATGGAAC
CGACAAAGAAAACATCTGTGTGTTATTCTAATCACAGAGAATAATAGGAA
AAAAGACTTTGAAAGAGTCGCTCTAAGAAATATTGCTTTAAGTGTTGGGT
ACAATTCAGAAAAAGTTCGATTCGCCTATATATTCAAGGAAAGTCAACCG
GATTTTATTAAATCAATTTCCAAAGGATCGTTTAAGGACAGTCTTATAGA
AATTGTCATTATCTGGCGGCGAGATAAAAAACGTATTAAGTATAATTGGG
TCTACGTCGCCAAACAGAATGGCAACAGTTCACCGGAACACTTGATGAAT
TCAACTAAAGACCAAATTTCTAATGCAGTGAAAAAGTTATTAAAAAATTC
GGAAGCGTTATGTTACGAAGCCATTGTAGAGAACTTATTTAACGAGCATT
CACAGGGAATTTTAACTAAATGGATTTCTCAGTTCTTATATGTGGTCGAT
TACCTATCTGATAATATTGAAGACGAGCACCTTTTGGCGGTTTTTTCTCT
TTTAGGAACTATTGCATTTATGTTTACTGTCGGTTATGTATTGATCTACT
TTGTTAGAGTTGAAGAGAAATATCTTAAGGCGCATGGCCACCTTATCGAT
ATACAAGATCAGCGCCACATCAATTTGATTCCGGAACTAAAATTATATGA
ACTAAGAGCTGAAAAATATAATGGAATGGTTCGACTACTTAAGCCCGGAT
GCCGAACCTTACTTCTTATCAATGATTGTCAAAGTCGGCATAAACTTATT
CCGTACTTTCACAAGGCAGTTTGGCCATACAGGAAATCCAAAACATTATT
ATTCGGGCATATGGTAATTGAAAGAGGATTGCCGTGGTTTGCGGAAATTC
TTCGTTTATCATTAAGCAAAAATCGACATTTGCAAGTCAATCCCAGAAAT
TGCGTTGGTACTGTTCTGGCATTAAATGGTCACCGGAAATATTTTTGTAT
GTATCATGCAAAGCACCCAGAGTCTGCTTTGGGAACAAAGAGGACATTAA
AGAATACACAAAAGCTTTTGGACGCAAATGAGGATCCTGAAATCGGAACG
TTTCTGAAAAGAGATTTCTCTGAAGAATCAGAGTCCGAACCAAATATTCT
TTTGGAGGATAATTTACTTAATGGTCTTGACAATTGGCTTGAAAGATTGT
TTGATGGAAGAACACAAAAATACTACATAAACTATTGGCCAGACTTTATT
ACTAAGGCAAGCTTTCTAGACCAT
BO20947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40178-RC | 2343 | CG40178-PC | 1..2340 | 17..2356 | 11685 | 100 | Plus |
CG40178-RA | 2343 | CG40178-PA | 1..2340 | 17..2356 | 11685 | 100 | Plus |
CG40178-RB | 2343 | CG40178-PB | 1..2340 | 17..2356 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40178-RC | 2984 | CG40178-RC | 559..2898 | 17..2356 | 11685 | 100 | Plus |
CG40178-RA | 2558 | CG40178-RA | 133..2472 | 17..2356 | 11685 | 100 | Plus |
CG40178-RB | 2619 | CG40178-RB | 194..2533 | 17..2356 | 11685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 25969225..25969628 | 589..186 | 2020 | 100 | Minus |
3L | 28110227 | 3L | 26165233..26165635 | 186..589 | 1955 | 99.5 | Plus |
3L | 28110227 | 3L | 25843725..25844109 | 2140..1756 | 1925 | 100 | Minus |
3L | 28110227 | 3L | 25874142..25874386 | 1531..1287 | 1210 | 99.6 | Minus |
3L | 28110227 | 3L | 25873860..25874087 | 1757..1530 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 25798527..25798744 | 2356..2139 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 25933194..25933411 | 1129..912 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 25961360..25961541 | 912..731 | 910 | 100 | Minus |
3L | 28110227 | 3L | 25977966..25978136 | 187..17 | 855 | 100 | Minus |
3L | 28110227 | 3L | 26178612..26178792 | 731..912 | 845 | 98.9 | Plus |
3L | 28110227 | 3L | 25924290..25924456 | 1294..1128 | 820 | 99.4 | Minus |
3L | 28110227 | 3L | 26169489..26169661 | 17..189 | 760 | 96 | Plus |
3L | 28110227 | 3L | 25969034..25969182 | 731..583 | 745 | 100 | Minus |
3L | 28110227 | 3L | 26219982..26220153 | 17..187 | 705 | 95.3 | Plus |
3L | 28110227 | 3L | 26165678..26165826 | 583..731 | 700 | 98 | Plus |
3L | 28110227 | 3L | 26213849..26214020 | 17..187 | 690 | 94.8 | Plus |
Blast to na_te.dros performed 2014-11-26 14:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord | 7404 | accord ACCORD 7404bp | 6090..6151 | 1437..1496 | 125 | 69.4 | Plus |
BO20947.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:58:36 Download gff for
BO20947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40178-RA | 133..2472 | 17..2358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:17 Download gff for
BO20947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40178-RB | 194..2533 | 17..2358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:35 Download gff for
BO20947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40178-RB | 194..2533 | 17..2358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:35 Download gff for
BO20947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 25843725..25844107 | 1758..2140 | 100 | <- | Minus |
3L | 25873860..25874085 | 1532..1757 | 100 | <- | Minus |
3L | 25874142..25874384 | 1289..1531 | 99 | <- | Minus |
3L | 25924296..25924456 | 1128..1288 | 100 | <- | Minus |
3L | 25933196..25933410 | 913..1127 | 100 | <- | Minus |
3L | 25961360..25961540 | 732..912 | 100 | <- | Minus |
3L | 25969034..25969180 | 585..731 | 100 | <- | Minus |
3L | 25969230..25969627 | 187..584 | 100 | <- | Minus |
3L | 25977967..25978136 | 17..186 | 100 | | Minus |
3L | 25798524..25798742 | 2141..2358 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:17 Download gff for
BO20947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 1351733..1351879 | 585..731 | 100 | <- | Minus |
3LHet | 1360666..1360835 | 17..186 | 100 | | Minus |
3LHet | 1315895..1316109 | 913..1127 | 100 | <- | Minus |
3LHet | 1344059..1344239 | 732..912 | 100 | <- | Minus |
3LHet | 1181223..1181441 | 2141..2358 | 99 | <- | Minus |
3LHet | 1226424..1226806 | 1758..2140 | 100 | <- | Minus |
3LHet | 1256559..1256784 | 1532..1757 | 100 | <- | Minus |
3LHet | 1256841..1257083 | 1289..1531 | 99 | <- | Minus |
3LHet | 1306995..1307155 | 1128..1288 | 100 | <- | Minus |
3LHet | 1351929..1352326 | 187..584 | 100 | <- | Minus |
BO20947.pep Sequence
Translation from 16 to 2374
> BO20947.pep
MISCLISNYIITILVLCTTSYIHVCSSLNDPYAILGINKKATTYEIREAY
KELAKKWHPDKVKNDYGAEKFIQIKLAYEILADLDRRRIFDRYGVSDINS
QYFQKKHDYSEYNRFTLNQNDDDFGQRFDIKQDIAFYQKLSITENYFEKM
ILSKNAKKVHVVMFYNDWCFKCTRIVDAFKKILELLQPIGINFATVNAVH
EESVFRKCGAREVPQLVLILDNQYFLYRDHSFTPQKVVEFIRKKIPFNVF
KRIEHDNFNDFLGGWSDNRARALIFEPRSLTRLRYLLTAFEFYDRVAFGF
VNTISKDSSNIITRFKVNTSLDTLILFNEDTTTFTASVCMEEIPNHILVN
MVSTNQFLAFPRISSQNIMESVCPTEWNRQRKHLCVILITENNRKKDFER
VALRNIALSVGYNSEKVRFAYIFKESQPDFIKSISKGSFKDSLIEIVIIW
RRDKKRIKYNWVYVAKQNGNSSPEHLMNSTKDQISNAVKKLLKNSEALCY
EAIVENLFNEHSQGILTKWISQFLYVVDYLSDNIEDEHLLAVFSLLGTIA
FMFTVGYVLIYFVRVEEKYLKAHGHLIDIQDQRHINLIPELKLYELRAEK
YNGMVRLLKPGCRTLLLINDCQSRHKLIPYFHKAVWPYRKSKTLLFGHMV
IERGLPWFAEILRLSLSKNRHLQVNPRNCVGTVLALNGHRKYFCMYHAKH
PESALGTKRTLKNTQKLLDANEDPEIGTFLKRDFSEESESEPNILLEDNL
LNGLDNWLERLFDGRTQKYYINYWPDFITKASFLDH
BO20947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40178-PC | 780 | CG40178-PC | 1..780 | 1..780 | 4103 | 100 | Plus |
CG40178-PA | 780 | CG40178-PA | 1..780 | 1..780 | 4103 | 100 | Plus |
CG40178-PB | 780 | CG40178-PB | 1..780 | 1..780 | 4103 | 100 | Plus |
DnaJ-1-PA | 334 | CG10578-PA | 4..68 | 30..94 | 170 | 50.8 | Plus |
DnaJ-1-PB | 334 | CG10578-PB | 4..68 | 30..94 | 170 | 50.8 | Plus |