Clone BO20947 Report

Search the DGRC for BO20947

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:209
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG40178-RA
Protein status:BO20947.pep: Imported from assembly
Sequenced Size:2374

Clone Sequence Records

BO20947.complete Sequence

2374 bp assembled on 2011-03-14

GenBank Submission: KX798587

> BO20947.complete
GAAGTTATCAGTCGACATGATTTCATGCTTAATTAGTAATTATATTATAA
CCATTCTGGTCCTGTGTACAACATCCTATATACACGTTTGTTCGTCGTTA
AATGACCCATACGCTATATTGGGAATAAACAAAAAGGCAACTACATACGA
AATAAGAGAAGCTTACAAGGAATTAGCTAAGAAATGGCATCCTGATAAAG
TTAAAAATGATTACGGTGCCGAAAAGTTCATACAAATTAAACTAGCTTAT
GAAATTCTAGCTGACTTGGATCGACGACGAATTTTTGACCGGTATGGAGT
ATCGGATATTAACTCACAGTATTTTCAGAAGAAACATGATTATAGTGAAT
ATAATCGCTTTACATTAAATCAGAATGATGATGATTTTGGACAACGATTC
GATATAAAACAAGACATTGCATTTTATCAGAAGTTATCAATAACAGAAAA
TTACTTTGAGAAAATGATTTTATCAAAAAATGCAAAAAAAGTGCACGTCG
TCATGTTTTACAATGATTGGTGTTTTAAATGTACTCGAATTGTTGATGCC
TTCAAAAAGATTCTTGAACTACTTCAGCCAATAGGTATTAACTTTGCAAC
GGTTAATGCAGTGCATGAAGAGTCCGTTTTTCGAAAATGTGGCGCCAGAG
AAGTGCCACAACTGGTTTTGATTTTAGACAATCAGTATTTCTTATATCGC
GATCATAGCTTTACCCCACAAAAAGTTGTTGAATTTATACGCAAAAAAAT
ACCATTTAATGTTTTCAAACGCATCGAACATGACAATTTCAATGATTTTC
TGGGAGGATGGAGTGACAACAGAGCAAGGGCTTTAATTTTTGAGCCTCGA
AGTTTAACTAGGTTACGATACCTTCTAACCGCCTTTGAATTTTACGACCG
AGTTGCATTTGGATTTGTGAATACGATTAGTAAGGATTCAAGCAATATAA
TAACTCGGTTTAAGGTCAATACAAGCCTAGATACACTTATTTTATTTAAT
GAGGATACGACGACCTTTACAGCCAGTGTTTGTATGGAAGAAATCCCAAA
TCACATCTTGGTGAATATGGTATCTACTAATCAATTCTTGGCATTTCCTC
GAATATCATCACAGAACATTATGGAAAGTGTGTGCCCAACTGAATGGAAC
CGACAAAGAAAACATCTGTGTGTTATTCTAATCACAGAGAATAATAGGAA
AAAAGACTTTGAAAGAGTCGCTCTAAGAAATATTGCTTTAAGTGTTGGGT
ACAATTCAGAAAAAGTTCGATTCGCCTATATATTCAAGGAAAGTCAACCG
GATTTTATTAAATCAATTTCCAAAGGATCGTTTAAGGACAGTCTTATAGA
AATTGTCATTATCTGGCGGCGAGATAAAAAACGTATTAAGTATAATTGGG
TCTACGTCGCCAAACAGAATGGCAACAGTTCACCGGAACACTTGATGAAT
TCAACTAAAGACCAAATTTCTAATGCAGTGAAAAAGTTATTAAAAAATTC
GGAAGCGTTATGTTACGAAGCCATTGTAGAGAACTTATTTAACGAGCATT
CACAGGGAATTTTAACTAAATGGATTTCTCAGTTCTTATATGTGGTCGAT
TACCTATCTGATAATATTGAAGACGAGCACCTTTTGGCGGTTTTTTCTCT
TTTAGGAACTATTGCATTTATGTTTACTGTCGGTTATGTATTGATCTACT
TTGTTAGAGTTGAAGAGAAATATCTTAAGGCGCATGGCCACCTTATCGAT
ATACAAGATCAGCGCCACATCAATTTGATTCCGGAACTAAAATTATATGA
ACTAAGAGCTGAAAAATATAATGGAATGGTTCGACTACTTAAGCCCGGAT
GCCGAACCTTACTTCTTATCAATGATTGTCAAAGTCGGCATAAACTTATT
CCGTACTTTCACAAGGCAGTTTGGCCATACAGGAAATCCAAAACATTATT
ATTCGGGCATATGGTAATTGAAAGAGGATTGCCGTGGTTTGCGGAAATTC
TTCGTTTATCATTAAGCAAAAATCGACATTTGCAAGTCAATCCCAGAAAT
TGCGTTGGTACTGTTCTGGCATTAAATGGTCACCGGAAATATTTTTGTAT
GTATCATGCAAAGCACCCAGAGTCTGCTTTGGGAACAAAGAGGACATTAA
AGAATACACAAAAGCTTTTGGACGCAAATGAGGATCCTGAAATCGGAACG
TTTCTGAAAAGAGATTTCTCTGAAGAATCAGAGTCCGAACCAAATATTCT
TTTGGAGGATAATTTACTTAATGGTCTTGACAATTGGCTTGAAAGATTGT
TTGATGGAAGAACACAAAAATACTACATAAACTATTGGCCAGACTTTATT
ACTAAGGCAAGCTTTCTAGACCAT

BO20947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG40178-RC 2343 CG40178-PC 1..2340 17..2356 11685 100 Plus
CG40178-RA 2343 CG40178-PA 1..2340 17..2356 11685 100 Plus
CG40178-RB 2343 CG40178-PB 1..2340 17..2356 11685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG40178-RC 2984 CG40178-RC 559..2898 17..2356 11685 100 Plus
CG40178-RA 2558 CG40178-RA 133..2472 17..2356 11685 100 Plus
CG40178-RB 2619 CG40178-RB 194..2533 17..2356 11685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25969225..25969628 589..186 2020 100 Minus
3L 28110227 3L 26165233..26165635 186..589 1955 99.5 Plus
3L 28110227 3L 25843725..25844109 2140..1756 1925 100 Minus
3L 28110227 3L 25874142..25874386 1531..1287 1210 99.6 Minus
3L 28110227 3L 25873860..25874087 1757..1530 1140 100 Minus
3L 28110227 3L 25798527..25798744 2356..2139 1090 100 Minus
3L 28110227 3L 25933194..25933411 1129..912 1090 100 Minus
3L 28110227 3L 25961360..25961541 912..731 910 100 Minus
3L 28110227 3L 25977966..25978136 187..17 855 100 Minus
3L 28110227 3L 26178612..26178792 731..912 845 98.9 Plus
3L 28110227 3L 25924290..25924456 1294..1128 820 99.4 Minus
3L 28110227 3L 26169489..26169661 17..189 760 96 Plus
3L 28110227 3L 25969034..25969182 731..583 745 100 Minus
3L 28110227 3L 26219982..26220153 17..187 705 95.3 Plus
3L 28110227 3L 26165678..26165826 583..731 700 98 Plus
3L 28110227 3L 26213849..26214020 17..187 690 94.8 Plus
Blast to na_te.dros performed 2014-11-26 14:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 6090..6151 1437..1496 125 69.4 Plus

BO20947.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:58:36 Download gff for BO20947.complete
Subject Subject Range Query Range Percent Splice Strand
CG40178-RA 133..2472 17..2358 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:17 Download gff for BO20947.complete
Subject Subject Range Query Range Percent Splice Strand
CG40178-RB 194..2533 17..2358 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:35 Download gff for BO20947.complete
Subject Subject Range Query Range Percent Splice Strand
CG40178-RB 194..2533 17..2358 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:35 Download gff for BO20947.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25843725..25844107 1758..2140 100 <- Minus
3L 25873860..25874085 1532..1757 100 <- Minus
3L 25874142..25874384 1289..1531 99 <- Minus
3L 25924296..25924456 1128..1288 100 <- Minus
3L 25933196..25933410 913..1127 100 <- Minus
3L 25961360..25961540 732..912 100 <- Minus
3L 25969034..25969180 585..731 100 <- Minus
3L 25969230..25969627 187..584 100 <- Minus
3L 25977967..25978136 17..186 100   Minus
3L 25798524..25798742 2141..2358 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:17 Download gff for BO20947.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 1351733..1351879 585..731 100 <- Minus
3LHet 1360666..1360835 17..186 100   Minus
3LHet 1315895..1316109 913..1127 100 <- Minus
3LHet 1344059..1344239 732..912 100 <- Minus
3LHet 1181223..1181441 2141..2358 99 <- Minus
3LHet 1226424..1226806 1758..2140 100 <- Minus
3LHet 1256559..1256784 1532..1757 100 <- Minus
3LHet 1256841..1257083 1289..1531 99 <- Minus
3LHet 1306995..1307155 1128..1288 100 <- Minus
3LHet 1351929..1352326 187..584 100 <- Minus

BO20947.pep Sequence

Translation from 16 to 2374

> BO20947.pep
MISCLISNYIITILVLCTTSYIHVCSSLNDPYAILGINKKATTYEIREAY
KELAKKWHPDKVKNDYGAEKFIQIKLAYEILADLDRRRIFDRYGVSDINS
QYFQKKHDYSEYNRFTLNQNDDDFGQRFDIKQDIAFYQKLSITENYFEKM
ILSKNAKKVHVVMFYNDWCFKCTRIVDAFKKILELLQPIGINFATVNAVH
EESVFRKCGAREVPQLVLILDNQYFLYRDHSFTPQKVVEFIRKKIPFNVF
KRIEHDNFNDFLGGWSDNRARALIFEPRSLTRLRYLLTAFEFYDRVAFGF
VNTISKDSSNIITRFKVNTSLDTLILFNEDTTTFTASVCMEEIPNHILVN
MVSTNQFLAFPRISSQNIMESVCPTEWNRQRKHLCVILITENNRKKDFER
VALRNIALSVGYNSEKVRFAYIFKESQPDFIKSISKGSFKDSLIEIVIIW
RRDKKRIKYNWVYVAKQNGNSSPEHLMNSTKDQISNAVKKLLKNSEALCY
EAIVENLFNEHSQGILTKWISQFLYVVDYLSDNIEDEHLLAVFSLLGTIA
FMFTVGYVLIYFVRVEEKYLKAHGHLIDIQDQRHINLIPELKLYELRAEK
YNGMVRLLKPGCRTLLLINDCQSRHKLIPYFHKAVWPYRKSKTLLFGHMV
IERGLPWFAEILRLSLSKNRHLQVNPRNCVGTVLALNGHRKYFCMYHAKH
PESALGTKRTLKNTQKLLDANEDPEIGTFLKRDFSEESESEPNILLEDNL
LNGLDNWLERLFDGRTQKYYINYWPDFITKASFLDH

BO20947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG40178-PC 780 CG40178-PC 1..780 1..780 4103 100 Plus
CG40178-PA 780 CG40178-PA 1..780 1..780 4103 100 Plus
CG40178-PB 780 CG40178-PB 1..780 1..780 4103 100 Plus
DnaJ-1-PA 334 CG10578-PA 4..68 30..94 170 50.8 Plus
DnaJ-1-PB 334 CG10578-PB 4..68 30..94 170 50.8 Plus