BO20979.complete Sequence
2002 bp assembled on 2012-04-24
GenBank Submission: KX796182
> BO20979.complete
GAAGTTATCAGTCGACATGGATAACGAGGCGTTAGATCCAACAATAAAAA
GCAGTACGTCGGCAGCGACGCCAACAGCAGCAGCATCAGAAACGACAACA
ACAGCAGCATCTTCAGTTGTGGAAACCACAACAACAATCGCGGCGGCCAC
AGCCTCAGCGGCAGAATCAAAAAACGAAACAACGGCCACAAACAACAATA
GCAACACAAGCGGCAGCATCAGCAGTAGTAGCAGCAACAATATAGTCATA
CCGGCATCGGCCACTAACGGTATCAAAGAGAGTAACAGTAACTTAAGTAC
AACAACAACAGCAGCAGCAGTAGCGGCAGCAACAACTGTAGAAGGAGTAG
CTCCAGCAATAACGTCCACAATCGTGGTGACCGGCGGCACTCCTCCATTG
AGCAGTTTGGCTAACAAACTCAAGGACAACACACCACCGTACGATGCACC
GCCGCCCACGCCGATCAGCAAGGTCCTGAACATCACCGGCACCCCGATCG
TTCGCAAGGAGAAGCGCCAGACCAGCGCCCGGTACAATGCCTCCAAGAAC
TGCGAACTGACGGCCCTCATTCCGCTAAACGAGAAGACCGCCGCCAGTGA
ACGTGAGGAGCTGTTCATACAGAAGATCCAGCAATGCTGCACACTGTTCG
ACTTCTCCGAGCCGCTCAGCGACCTCAAGTTCAAGGAGGTGAAGCGGGCG
GCTCTGCACGAAATGGTCGATTTCCTCACCAACCAAAATGGCGTAATAAC
CGAAGTTATTTACCCGGAGGCGATCAATATGTTTGCTGTCAACCTTTTCC
GAACTCTGCCGCCATCGTCCAACCCGAATGGTGCCGAATTCGATCCGGAG
GAGGATGAGCCCACGTTGGAGTCCTCGTGGCCGCATCTGCAACTCGTTTA
CGAGCTGTTCTTGCGCTTCTTGGAGTCACCAGATTTTCAACCAAGCATGG
CAAAACGTTTTATCGACCATCAATTTGTATTACAACTATTGGATTTATTC
GATTCGGAGGATCCACGTGAACGTGATTTCCTGAAGACTGTTTTACATCG
CATCTATGGAAAATTTTTGGGCTTGAGAGCATTTATTAGAAAGCAGATCA
ACAATGTCTTTTACAGATTTATTTATGAAACGGAGCATCATAATGGCATA
GCCGAATTGTTGGAAATCCTGGGTAGCATTATCAATGGCTTTGCTCTGCC
GCTTAAGGAGGAGCATAAACAATTTTTACTTAAGGTATTGCTGCCATTGC
ACAAAGCCAAGAGCCTCTCGGTCTACCATCCGCAGCTCACCTATTGTGTG
GTGCAGTTCCTGGAGAAGGATCCTAGCTTATCGGAGGCGGTCATCAAAAG
CCTACTTAAATTTTGGCCCAAGACGCACAGTCCCAAGGAGGTTATGTTTT
TGAACGAGCTGGAGGAGCTGTTGGACGTAATTGAGCCGGCCGAGTTCCAG
AAGGTGATGGTGCCGCTGTTCCGCCAAATAGCCAAGTGCGTCTCTTCGCC
TCATTTCCAGGTGGCCGAACGTGCGTTGTACTATTGGAACAACGAGTACA
TTATGTCGCTGATAACGGATAACTCGGCGGTGATATTACCCATTATGTTC
CCAGCGCTCAATCGCAACTCAAAGACGCACTGGAACAAGACCATCCATGG
TCTGATCTACAATGCACTCAAGCTGTTCATGGAGATAGATCAGCGGCTTT
TTGACGAGTGCAGCAAGAACTACAAGCAAGAGAAGCAGATGGAGCGTGAG
AAGCTGTCGCAAAGGGAGGAGCTCTGGCAACAGGTGGAGAGCTTGGCCAA
GACCAACCCGGAGTGGACAAAGGCGCGCCGGTTTAACGACTGCCTGCCGG
TCAGCGACAGCCGGGCCCTGTGCGATCAATATAGTGAGAACAGCGATTCA
GCGTATGATCAGAGCGAGCAGAGGGCGCGCCAGCCGCCGCCTCCGCTGCC
GCCACAGAAACAGGCGCACCAGGAGCCCCGAGAGGCAAGCTTTCTAGACC
AT
BO20979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RN | 2013 | CG7913-PN | 1..1969 | 17..1985 | 9845 | 100 | Plus |
| PP2A-B'-RM | 2013 | CG7913-PM | 1..1969 | 17..1985 | 9845 | 100 | Plus |
| PP2A-B'-RL | 2013 | CG7913-PL | 1..1969 | 17..1985 | 9845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RN | 2727 | CG7913-RN | 567..2535 | 17..1985 | 9845 | 100 | Plus |
| PP2A-B'-RM | 2280 | CG7913-RM | 120..2088 | 17..1985 | 9845 | 100 | Plus |
| PP2A-B'-RL | 2453 | CG7913-RL | 293..2261 | 17..1985 | 9845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18169706..18170099 | 17..410 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 18176307..18176700 | 1348..1741 | 1970 | 100 | Plus |
| 3R | 32079331 | 3R | 18175602..18175937 | 781..1116 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 18176805..18177049 | 1741..1985 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 18176002..18176234 | 1115..1347 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 18175333..18175529 | 585..781 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 18171528..18171703 | 409..584 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 27566644..27566783 | 1137..998 | 205 | 76.4 | Minus |
Blast to na_te.dros performed 2014-11-28 04:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2836 | 39..536 | 486 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..7060 | 47..368 | 328 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7015 | 36..338 | 320 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6943 | 123..347 | 319 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2544 | 63..324 | 315 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2683 | 47..362 | 311 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6944 | 96..318 | 310 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2525 | 156..371 | 304 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2553 | 99..362 | 301 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6897 | 72..242 | 293 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6896 | 186..363 | 290 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..3034 | 65..361 | 284 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..3001 | 39..255 | 270 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6921 | 150..358 | 260 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2471 | 201..371 | 257 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..7079 | 39..357 | 250 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2509 | 180..389 | 249 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2916 | 35..372 | 242 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6498..6829 | 34..362 | 236 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2937 | 60..351 | 230 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2885 | 72..371 | 229 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2957 | 41..240 | 229 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2781 | 39..363 | 227 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..7088 | 62..318 | 212 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2585..2855 | 86..359 | 211 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6859 | 229..371 | 205 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6863 | 204..363 | 201 | 63.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 956..1161 | 164..370 | 195 | 57.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1159 | 150..249 | 191 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2408 | 284..371 | 183 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1587 | 37..111 | 178 | 74.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1180 | 79..199 | 177 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1615 | 168..289 | 176 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1161 | 187..275 | 174 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2432 | 261..371 | 169 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1179 | 60..178 | 168 | 62.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1136 | 283..363 | 166 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6851..7005 | 60..206 | 161 | 62.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1080 | 301..408 | 160 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6796 | 300..371 | 153 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2505 | 300..493 | 149 | 55.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3268..3335 | 50..116 | 148 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 23..136 | 147 | 62.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1164 | 47..112 | 145 | 73.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1154 | 254..336 | 144 | 66.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3277..3342 | 292..357 | 141 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1605 | 38..134 | 138 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1013..1104 | 267..358 | 136 | 60.9 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 671..722 | 351..300 | 134 | 73.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1180 | 39..138 | 133 | 63.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1019 | 69..116 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1589 | 300..368 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2359 | 306..358 | 121 | 69.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 67..196 | 209..338 | 118 | 56.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9097..9226 | 209..338 | 118 | 56.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8049 | 300..395 | 117 | 60.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9493 | 300..395 | 117 | 60.8 | Plus |
BO20979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:34 Download gff for
BO20979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RD | 189..2157 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:19 Download gff for
BO20979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RL | 293..2261 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:22 Download gff for
BO20979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RL | 293..2261 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:01 Download gff for
BO20979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RL | 293..2261 | 17..1986 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:01 Download gff for
BO20979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18169706..18170098 | 17..409 | 100 | -> | Plus |
| 3R | 18171529..18171703 | 410..584 | 100 | -> | Plus |
| 3R | 18175333..18175529 | 585..781 | 100 | -> | Plus |
| 3R | 18175603..18175937 | 782..1116 | 100 | -> | Plus |
| 3R | 18176004..18176234 | 1117..1347 | 100 | -> | Plus |
| 3R | 18176307..18176699 | 1348..1740 | 100 | -> | Plus |
| 3R | 18176805..18177049 | 1741..1986 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:22 Download gff for
BO20979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14002527..14002771 | 1741..1986 | 99 | | Plus |
| arm_3R | 13995428..13995820 | 17..409 | 100 | -> | Plus |
| arm_3R | 13997251..13997425 | 410..584 | 100 | -> | Plus |
| arm_3R | 14001055..14001251 | 585..781 | 100 | -> | Plus |
| arm_3R | 14001325..14001659 | 782..1116 | 100 | -> | Plus |
| arm_3R | 14001726..14001956 | 1117..1347 | 100 | -> | Plus |
| arm_3R | 14002029..14002421 | 1348..1740 | 100 | -> | Plus |
BO20979.pep Sequence
Translation from 16 to 2002
> BO20979.pep
MDNEALDPTIKSSTSAATPTAAASETTTTAASSVVETTTTIAAATASAAE
SKNETTATNNNSNTSGSISSSSSNNIVIPASATNGIKESNSNLSTTTTAA
AVAAATTVEGVAPAITSTIVVTGGTPPLSSLANKLKDNTPPYDAPPPTPI
SKVLNITGTPIVRKEKRQTSARYNASKNCELTALIPLNEKTAASEREELF
IQKIQQCCTLFDFSEPLSDLKFKEVKRAALHEMVDFLTNQNGVITEVIYP
EAINMFAVNLFRTLPPSSNPNGAEFDPEEDEPTLESSWPHLQLVYELFLR
FLESPDFQPSMAKRFIDHQFVLQLLDLFDSEDPRERDFLKTVLHRIYGKF
LGLRAFIRKQINNVFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH
KQFLLKVLLPLHKAKSLSVYHPQLTYCVVQFLEKDPSLSEAVIKSLLKFW
PKTHSPKEVMFLNELEELLDVIEPAEFQKVMVPLFRQIAKCVSSPHFQVA
ERALYYWNNEYIMSLITDNSAVILPIMFPALNRNSKTHWNKTIHGLIYNA
LKLFMEIDQRLFDECSKNYKQEKQMEREKLSQREELWQQVESLAKTNPEW
TKARRFNDCLPVSDSRALCDQYSENSDSAYDQSEQRARQPPPPLPPQKQA
HQEPREASFLDH
BO20979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-PO | 656 | CG7913-PO | 1..656 | 1..656 | 3373 | 100 | Plus |
| PP2A-B'-PN | 670 | CG7913-PN | 1..656 | 1..656 | 3373 | 100 | Plus |
| PP2A-B'-PM | 670 | CG7913-PM | 1..656 | 1..656 | 3373 | 100 | Plus |
| PP2A-B'-PL | 670 | CG7913-PL | 1..656 | 1..656 | 3373 | 100 | Plus |
| PP2A-B'-PJ | 703 | CG7913-PJ | 1..656 | 1..656 | 3373 | 100 | Plus |
