BO20980.complete Sequence
811 bp assembled on 2009-05-13
GenBank Submission: KX798503
> BO20980.complete
GAAGTTATCAGTCGACATGTCTAAAAAGCTGGTATTGTTGCTATTGTTTG
TTGCCACTGTCTGTGCCCACAGGAATCGCAATCGTACGGCTCATCATGGT
GGTGGTCCCAAGGACATCATTGTAAATGGCTATCCAGCCTACGAAGGCAA
GGCACCATATGCTGTGGGCCTGCGAATGAACAATGGAGCCGTGGGCGGAG
GTTCCGTAATTGGAAACAATTGGGTCCTGACCGCTGCCCATTGCCTGACC
ACCGATTCCGTGACCATACACTACGGCTCGAATCGTGCCTGGAACGGTCA
GCTTCAGCATACGGTGAACAAGAATAACTTCTTTCGCCATCCAGGATATC
CCAATAGCGCTGGTCACGACATCGGACTCATTCGCACCCCGTACGTCAGC
TTCACCAATCTGATCAACAAAGTTTCGCTGCCCAAGTTCAGCCAAAAAGG
TGAGCGTTTCGAGAACTGGTGGTGCGTGGCCTGCGGCTGGGGAGGAATGG
CCAATGGAGGATTGGCCGACTGGCTGCAATGCATGGACGTGCAAGTCATT
AGCAACGGAGAATGCGCCAGGTCATACGGATCGGTGGCCAGCACTGATAT
GTGCACCCGGGCCACCGATGGCAAGTCCGTGTGCGGTGGCGACTCTGGCG
GAGCACTGGTCACTCACGACAATCCCATTCAAGTGGGCGTTATCACCTTT
GCATCCATCGGCTGCAAGTCTGGACCATCGGGCTACACCCGTGTGTCCGA
TCACTTGGACTGGATCCGAGAGAAGTCGGGAATTGCCTATTACGCAAGCT
TTCTAGACCAT
BO20980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8329-RA | 780 | CG8329-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
| CG18179-RA | 807 | CG18179-PA | 382..782 | 368..768 | 430 | 73.8 | Plus |
| CG18180-RA | 795 | CG18180-PA | 472..770 | 470..768 | 370 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8329-RA | 910 | CG8329-RA | 15..792 | 16..793 | 3890 | 100 | Plus |
| CG18179-RA | 870 | CG18179-RA | 400..800 | 368..768 | 430 | 73.8 | Plus |
| CG18180-RA | 901 | CG18180-RA | 491..789 | 470..768 | 370 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9638126..9638903 | 16..793 | 3890 | 100 | Plus |
| 3L | 28110227 | 3L | 9639670..9640070 | 368..768 | 430 | 73.8 | Plus |
| 3L | 28110227 | 3L | 9641503..9641801 | 470..768 | 370 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:01:09 has no hits.
BO20980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:44 Download gff for
BO20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8329-RA | 16..792 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:16 Download gff for
BO20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8329-RA | 16..792 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:20 Download gff for
BO20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8329-RA | 16..792 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:20 Download gff for
BO20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9638127..9638903 | 17..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:16 Download gff for
BO20980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9631227..9632003 | 17..795 | 99 | | Plus |
BO20980.pep Sequence
Translation from 16 to 811
> BO20980.pep
MSKKLVLLLLFVATVCAHRNRNRTAHHGGGPKDIIVNGYPAYEGKAPYAV
GLRMNNGAVGGGSVIGNNWVLTAAHCLTTDSVTIHYGSNRAWNGQLQHTV
NKNNFFRHPGYPNSAGHDIGLIRTPYVSFTNLINKVSLPKFSQKGERFEN
WWCVACGWGGMANGGLADWLQCMDVQVISNGECARSYGSVASTDMCTRAT
DGKSVCGGDSGGALVTHDNPIQVGVITFASIGCKSGPSGYTRVSDHLDWI
REKSGIAYYASFLDH
BO20980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8329-PA | 259 | CG8329-PA | 1..259 | 1..259 | 1423 | 100 | Plus |
| CG18180-PA | 264 | CG18180-PA | 2..264 | 4..258 | 874 | 61.6 | Plus |
| CG18179-PA | 268 | CG18179-PA | 2..268 | 4..258 | 872 | 62.9 | Plus |
| Jon25Bi-PB | 266 | CG8867-PB | 2..266 | 3..259 | 644 | 49.1 | Plus |
| Jon66Cii-PA | 262 | CG7170-PA | 40..262 | 35..259 | 622 | 52 | Plus |
