BO20993.complete Sequence
973 bp assembled on 2009-05-13
GenBank Submission: KX796462
> BO20993.complete
GAAGTTATCAGTCGACATGCAGAAGCTCTACCACGAGGAGCGCCGTCGCA
AGTATCTACAGGAGCTGCAGGACATGAATTCGCGCCGCCACACGGACAAC
TTCACCCCGTCGCAGAAGTCGCCCATCGCCCTCAATCGCTACGATGACTT
CCCCACGGACGTGACCCTCAAGTCGCTGGTGGGCCCCAAGACGGTGGCCC
GGGCTCTCTTTAACTTCCAGGGACAGACCTCGAAGGAGCTATCCTTCCGC
AAGGGCGACACAATCTACATCAGGCGGCAGATTGATGCCAACTGGTATGA
GGGCGAGCACAATGCCATGATTGGACTGCTTCCAGCCAGCTATGTTGAGA
TTGTCAGTCGAGATGGAGCCCGTACCCCATCCAAACGGCCATCGGAGGGT
CAGGCCCGTGCCAAATACAACTTCCAGGCCCAGTCGGGCATTGAACTCTC
CTTGAACAAGGGCGAATTGGTCACTTTGACACGCCGAGTGGATGGCAACT
GGTTCGAGGGCAAGATTGCCAACAGGAAGGGCATCTTCCCGTGCTCCTAC
GTGGAGGTACTTACTGATATTGGTGCTGAGGACATTGCGGCCAGGACAAC
CACCGTGATCACCAGCCAGAGCACCACGAATCTGCGGCCCAATCTCGACG
TGCTGCGCACAAACATCAACAATGAGTTCAATACGCTGACGCAAAATGGA
GCACAGCCACCGAACGGAATCCTCAAGGAAACGCGGACACTTCACAAGAC
GGACGCCCTCCATGTGGACACCAGTTCCGAACCATTGGCGTACCGCGCAC
TGTACAAGTACCGGCCCCAGAACTCCGACGAACTGGAACTGCTCGAGGGA
GATGTGGTCCATGTGCTGGAGAAGTGCGACGACGGATGGTTCGTGGGCAC
CTCGCAGAGGACCGGCTGCTTCGGCACATTCCCCGGCAACTACGTGGAAC
GGGCCGCAAGCTTTCTAGACCAT
BO20993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RY | 7230 | CG18408-PY | 6287..7227 | 15..955 | 4705 | 100 | Plus |
| CAP-RX | 7518 | CG18408-PX | 6575..7515 | 15..955 | 4705 | 100 | Plus |
| CAP-RW | 4761 | CG18408-PW | 3818..4758 | 15..955 | 4705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RY | 8546 | CG18408-RY | 6892..7832 | 15..955 | 4705 | 100 | Plus |
| CAP-RX | 8834 | CG18408-RX | 7180..8120 | 15..955 | 4705 | 100 | Plus |
| CAP-RW | 5528 | CG18408-RW | 3874..4814 | 15..955 | 4705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10305736..10305972 | 555..791 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 10304711..10304931 | 15..235 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 10305470..10305680 | 348..558 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10306145..10306310 | 790..955 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 10304988..10305102 | 235..349 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:43 has no hits.
BO20993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:07 Download gff for
BO20993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RC | 1669..2607 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:01 Download gff for
BO20993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RW | 3876..4814 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:56 Download gff for
BO20993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RW | 3876..4814 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:56 Download gff for
BO20993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10304713..10304930 | 17..234 | 100 | -> | Plus |
| 2R | 10304988..10305102 | 235..349 | 100 | -> | Plus |
| 2R | 10305472..10305678 | 350..556 | 100 | -> | Plus |
| 2R | 10305738..10305970 | 557..789 | 100 | -> | Plus |
| 2R | 10306145..10306310 | 790..957 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:01 Download gff for
BO20993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6192218..6192435 | 17..234 | 100 | -> | Plus |
| arm_2R | 6192493..6192607 | 235..349 | 100 | -> | Plus |
| arm_2R | 6192977..6193183 | 350..556 | 100 | -> | Plus |
| arm_2R | 6193243..6193475 | 557..789 | 100 | -> | Plus |
| arm_2R | 6193650..6193815 | 790..957 | 98 | | Plus |
BO20993.pep Sequence
Translation from 16 to 973
> BO20993.pep
MQKLYHEERRRKYLQELQDMNSRRHTDNFTPSQKSPIALNRYDDFPTDVT
LKSLVGPKTVARALFNFQGQTSKELSFRKGDTIYIRRQIDANWYEGEHNA
MIGLLPASYVEIVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGE
LVTLTRRVDGNWFEGKIANRKGIFPCSYVEVLTDIGAEDIAARTTTVITS
QSTTNLRPNLDVLRTNINNEFNTLTQNGAQPPNGILKETRTLHKTDALHV
DTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTG
CFGTFPGNYVERAASFLDH
BO20993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-PN | 313 | CG18408-PN | 1..313 | 1..313 | 1639 | 100 | Plus |
| CAP-PE | 313 | CG18408-PE | 1..313 | 1..313 | 1639 | 100 | Plus |
| CAP-PG | 500 | CG18408-PG | 188..500 | 1..313 | 1639 | 100 | Plus |
| CAP-PH | 500 | CG18408-PH | 188..500 | 1..313 | 1639 | 100 | Plus |
| CAP-PD | 527 | CG18408-PD | 215..527 | 1..313 | 1639 | 100 | Plus |
