BO21013.complete Sequence
1633 bp assembled on 2011-06-14
GenBank Submission: KX796754
> BO21013.complete
GAAGTTATCAGTCGACATGGTTGACAACAGCACTAGCAACAACTCCTCGG
TTCTGGGCTTGCCCAGCAGTGGACATGTTAGCAACGGCTCCGGTAGCTCG
GCACAACTTGGGGCGGGAAATCCGCACGGTAACCAGGCCAACGGAGCGTC
CGGCGGCGTTGGCTCAATGAGCGGATCAGCTGTGGGCGCTGGAGCTACGG
GAATGACCGCCGATCTCTTGGCAAGCGGCGGTGCAGGAGCACAAGGCGGT
GCGGATCGCTTGGACGCGTCCAGCGACAGTGCTGTCAGTTCGATGGGCTC
CGAGCGAGTGCCGTCCCTCTCCGACGGCGAGTGGGGTGAGGGCAGTGACT
CCGCCCAGGATTACCATCAGGGCAAGTACGGAGGCCCCTACGACTTCAGC
TACAACAATAATTCACGGCTTAGCACCGCCACACGTCAGCCGCCGGTGGC
GCAGAAGAAGCATCAGCTGTACGGCAAGAGGGATCCCCATAAGCAGACGC
CATCGGCTTTGCCACCAACAGCTCCACCAGCAGCCGCGACTGCAGTCCAA
TCGCAGAGTATCAAGTACGAGTACGATGCTGGGTACGCCTCCTCGGGAAT
GGCCAGCGGTGGAATCAGTGAGCCAGGAGCGATGGGACCCGCTCTATCCA
AGGACTATCATCATCATCAGCCTTACGGCATGGGAGCCAGCGGCAGCGCC
TTTTCCGGCGACTATACAGTACGACCATCGCCAAGGACTTCGCAGGATTT
GGTGCAACTAAATCATACCTACTCGCTACCCCAGGGAAGTGGATCCCTTC
CCAGACCCCAGGCACGCGATAAGAAGCCCCTGGTCGCCACTAAAACCGCA
TCGAAGGGAGCGAGTGCCGGCAACAGCAGCAGTGTTGGCGGAAACAGCAG
CAACTTGGAGGAAGAGCATCTGACACGCGATGAAAAGCGCGCTCGATCCC
TGAACATACCCATTTCAGTGCCGGACATCATTAACCTGCCCATGGACGAG
TTCAACGAGCGCTTGTCGAAGTACGACCTTAGCGAGAACCAGTTGTCGCT
GATTCGCGACATTCGTCGGCGTGGAAAGAACAAGGTCGCTGCCCAGAATT
GCAGGAAACGCAAATTGGACCAGATCCTGACTCTAGAGGATGAGGTGAAC
GCGGTGGTTAAGCGCAAGACCCAACTTAATCAGGACCGCGATCATTTGGA
GAGCGAACGCAAGCGCATCTCGAACAAGTTTGCCATGCTGCATCGTCATG
TCTTCCAGTACCTACGGGATCCCGAGGGAAATCCCTGCTCGCCGGCGGAC
TACAGTTTGCAACAGGCTGCCGATGGCTCCGTCTACTTGCTACCACGTGA
AAAGTCCGAGGGTAACAACACGGCTACAGCTGCCTCCAATGCTGTTTCGT
CGGCCAGTGGGGGAAGTCTTAATGGCCACGTGCCCACTCAGGCTCCCATG
CACAGCCATCAGAGCCACGGAATGCAGGCGCAACATGTTGTCGGTGGGAT
GTCGCAGCAGCAGCAACAGCAGTCGAGGCTGCCTCCACACCTGCAACAGC
AGCATCATCTGCAGTCGCAGCAACAGCAGCCGGGAGGTCAGCAGCAACAG
CAGCACCGCAAGGAAGCAAGCTTTCTAGACCAT
BO21013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 3402 | CG43286-PN | 1800..3399 | 16..1615 | 8000 | 100 | Plus |
| cnc-RM | 3402 | CG43286-PM | 1800..3399 | 16..1615 | 8000 | 100 | Plus |
| cnc-RP | 2136 | CG43286-PP | 534..2133 | 16..1615 | 8000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 4746 | CG43286-RN | 2112..3711 | 16..1615 | 8000 | 100 | Plus |
| cnc-RM | 4737 | CG43286-RM | 2103..3702 | 16..1615 | 8000 | 100 | Plus |
| cnc-RP | 4261 | CG43286-RP | 795..2394 | 16..1615 | 8000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23187877..23189119 | 1258..16 | 6215 | 100 | Minus |
| 3R | 32079331 | 3R | 23187447..23187806 | 1615..1256 | 1800 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6859 | 1505..1611 | 242 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2468 | 1439..1619 | 227 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 1505..1618 | 223 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 1505..1615 | 222 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2427 | 1505..1607 | 207 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6944 | 1504..1601 | 202 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6900 | 1505..1605 | 198 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6931 | 1504..1615 | 198 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2513 | 1505..1611 | 178 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2483 | 1505..1612 | 171 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2871 | 1505..1601 | 164 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2536 | 1504..1581 | 163 | 70.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 1504..1577 | 154 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2665 | 1504..1575 | 144 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2915 | 1505..1619 | 134 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1587 | 1508..1556 | 119 | 71.4 | Plus |
BO21013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-14 15:55:13 Download gff for
BO21013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RD | 105..1703 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:55 Download gff for
BO21013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RP | 796..2394 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:52 Download gff for
BO21013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RP | 796..2394 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:52 Download gff for
BO21013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23187444..23187803 | 1259..1617 | 99 | <- | Minus |
| 3R | 23187877..23189118 | 17..1258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:55 Download gff for
BO21013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19013166..19013525 | 1259..1617 | 99 | <- | Minus |
| arm_3R | 19013599..19014840 | 17..1258 | 100 | | Minus |
BO21013.pep Sequence
Translation from 16 to 1633
> BO21013.pep
MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS
MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS
LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ
LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI
SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH
TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE
HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR
RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR
ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN
NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ
QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKEASFLDH
BO21013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-PO | 1430 | CG43286-PO | 851..1387 | 1..537 | 2771 | 99.4 | Plus |
| cnc-PN | 1133 | CG43286-PN | 601..1133 | 1..533 | 2765 | 100 | Plus |
| cnc-PM | 1133 | CG43286-PM | 601..1133 | 1..533 | 2765 | 100 | Plus |
| cnc-PP | 711 | CG43286-PP | 179..711 | 1..533 | 2765 | 100 | Plus |
| cnc-PL | 1046 | CG43286-PL | 514..1046 | 1..533 | 2765 | 100 | Plus |
