BO21088.complete Sequence
1927 bp assembled on 2010-12-13
GenBank Submission: KX799331
> BO21088.complete
GAAGTTATCAGTCGACATGTCCGCCGTACCGGTTGCCATCAAAACGGAGG
AAGTTATTCTAGAGCACGCCGAATACAACAGCGCCGAGGAATTGGATGAG
GAATTGCAATTGCAACTAGAGGATTCAGGGGGTGAGAACTATCACATCGA
GTTCGCCAGCGAGTCAGCTCATCAGGGTTCTCAGCGTCGACAGTCGAGCA
TGAGCGGTACGAATACCTCCAAGGGTGGAGGAGGAGGGGGCAGCGGGGCC
TTGAGCGATGGAGACGGTTCGGGAAAGCCCCTTGTGGACAGCGAGAAGCG
AATGCGTCGGGAAATCGCCAACAGCAACGAGCGCAGACGCATGCAGAGCA
TCAATGCCGGATTCCAGAGTCTGCGATCCCTGCTCCCGAGACACGAAGGC
GAGAAGTTGAGCAAGGCGGCCATCCTACAACAGACCTTCCAATACATTGT
GGAACTGGAGAACCAGAAGACGCAGCTGCTGACGCAGAACAGTGAACTGA
AGCGACAGGTGGGCGAGCACGAGGCCGGCGGTTCTGGCGATGGTGGTGGT
ACCAACTCCGGCGGAAACTACAATGATTCCAATGCCAGCGGGGGCAATTC
CACGGCGGTGGCCATCAAGAAACGGAAGCTGACTGATAACGTGATTAACA
TCCAGGCGATTAGTGACAGTTCCGACGAAGGTCTGGGATCGATGTCTCCA
GAGCCGATGACTCTGCTGACAGCCGGCGGAGCGGCGGCCACCAAACTGAG
CAATGCTGCTACTCTTCTGGCGGCCAAGGAGCTGCATGAGTCGAAGAAGC
AGTTGGAGAAGGAGCGCAGTCTGCGGCGACTCCTCGAGGATGAGCTCCAG
ATGATCAAGCGGCAGCTGTACAGCGTGGCAACCGCACCGCCCGGAACAGC
TGTGGCCGCCGCATCCGGCGGCAGTAGTGGCGCCTACATTCCACGTGAGG
TCATCGAGCACACCGATAACTTTGTGCGCAGCGAGGATTTGGAGGAACTT
GGCGGCACTGTCTCGTATGTGGAAATCGATGAAATGACTGGCCAGCAGCA
GGTGGTCGTGTGCTCCAGCATCGAGGAGCTGGAGGCCGATGCCGCTGCCG
AGATCATAACCGAGGATCAGGTGCACGAGGAGGTCATCCTGTCATCGAAC
AGCTCCACAGAGTCCGAGAACGAAGTGAACGTGAACGCAATTGCCAAAGC
CTATGCCGAAGGATGCACGTCGAGTGCTGCGATGCTTCAGCCAATTCTGC
AGGCGGCCATCAAGGCCACGCCCAAGGTGGAGGTGGAACGCATCCACGAG
AAGATTGTCAAGGTCAAGACGGAGAAGCACGATCTGCCATCGATGCAGAC
CGCACCACACTATCAGCATTCTCATCGCCAGAATCTAGAGACCATTGTCC
AGGCCATCAGGCATCTGGAGGGCGATCACCTATTCGCGGACGGCAGTGGG
GGCCAAGAAAAGTTTGGCCAGCAGCAGAATCTCCAGCAGCATCACCACCA
AATGTCTGGAGTTCACCACCAGCAGCTGCAACACCATCGTCTGGCGCAGG
ATGCGCCGCTGGCCCTCACCACCACGGGCAAGCAGCATGCGGCGCTGGCG
GAGCTTCGACCCTTCCTTCAACTCAAGAGCGGCGGCAACAAGCAGGTGAT
CATTACGGCCAAGACGGCCAAGGATTCCGGCGGTTTGGTCTCCACGAGCA
CCAGCAGTACAGCGGTTACGCCGACGGCGATCTTCAAGGTGCAAACAACG
GGCGGTCATGGAAACGGCAGTCATTTACCAGCGGGCTCATCGACGGGCAC
CATAATCACTGGAAGCAATGGCAGCGGTGGTGCCCAGCAGCTGACCATCA
CCACATCGTTGAAGCAGTGCCGACCGGGCGTGATAGTGGCCAAGCAGTTG
CCGTCGTCCGCAAGCTTTCTAGACCAT
BO21088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crp-RB | 1896 | CG7664-PB | 1..1893 | 17..1909 | 9465 | 100 | Plus |
| crp-RA | 1896 | CG7664-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crp-RB | 4402 | CG7664-RB | 540..2434 | 15..1909 | 9475 | 100 | Plus |
| crp-RA | 3537 | CG7664-RA | 540..2434 | 15..1909 | 9475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16265524..16267019 | 1909..414 | 7480 | 100 | Minus |
| 2L | 23513712 | 2L | 16278862..16279169 | 416..109 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 16287098..16287191 | 108..15 | 470 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1085..1157 | 1469..1541 | 140 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1143 | 1468..1551 | 132 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2467 | 1469..1587 | 128 | 58.8 | Plus |
BO21088.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:54 Download gff for
BO21088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 540..2432 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:09 Download gff for
BO21088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 542..2434 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:48 Download gff for
BO21088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crp-RA | 542..2434 | 17..1911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:48 Download gff for
BO21088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16265521..16267017 | 416..1911 | 99 | <- | Minus |
| 2L | 16278863..16279169 | 109..415 | 100 | <- | Minus |
| 2L | 16287098..16287189 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:09 Download gff for
BO21088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16265521..16267017 | 416..1911 | 99 | <- | Minus |
| arm_2L | 16278863..16279169 | 109..415 | 100 | <- | Minus |
| arm_2L | 16287098..16287189 | 17..108 | 100 | | Minus |
BO21088.pep Sequence
Translation from 16 to 1927
> BO21088.pep
MSAVPVAIKTEEVILEHAEYNSAEELDEELQLQLEDSGGENYHIEFASES
AHQGSQRRQSSMSGTNTSKGGGGGGSGALSDGDGSGKPLVDSEKRMRREI
ANSNERRRMQSINAGFQSLRSLLPRHEGEKLSKAAILQQTFQYIVELENQ
KTQLLTQNSELKRQVGEHEAGGSGDGGGTNSGGNYNDSNASGGNSTAVAI
KKRKLTDNVINIQAISDSSDEGLGSMSPEPMTLLTAGGAAATKLSNAATL
LAAKELHESKKQLEKERSLRRLLEDELQMIKRQLYSVATAPPGTAVAAAS
GGSSGAYIPREVIEHTDNFVRSEDLEELGGTVSYVEIDEMTGQQQVVVCS
SIEELEADAAAEIITEDQVHEEVILSSNSSTESENEVNVNAIAKAYAEGC
TSSAAMLQPILQAAIKATPKVEVERIHEKIVKVKTEKHDLPSMQTAPHYQ
HSHRQNLETIVQAIRHLEGDHLFADGSGGQEKFGQQQNLQQHHHQMSGVH
HQQLQHHRLAQDAPLALTTTGKQHAALAELRPFLQLKSGGNKQVIITAKT
AKDSGGLVSTSTSSTAVTPTAIFKVQTTGGHGNGSHLPAGSSTGTIITGS
NGSGGAQQLTITTSLKQCRPGVIVAKQLPSSASFLDH
BO21088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crp-PB | 631 | CG7664-PB | 1..631 | 1..631 | 3166 | 100 | Plus |
| crp-PA | 631 | CG7664-PA | 1..631 | 1..631 | 3166 | 100 | Plus |
