BO21313.complete Sequence
760 bp assembled on 2009-07-17
GenBank Submission: KX794585
> BO21313.complete
GAAGTTATCAGTCGACATGCCACGCAAGAAGCGCAGTTCCAGCCCCACGG
AGTTCTTTGATGACGACTTCGATGAGGATGCCAGTTCTCAAAGCTCCCAA
CCGCCGGTGCAGCGAAATGCGGCAAATGCCCGGGAGCGGATGCGTATGCG
GGTTTTATCCAGCGCCTACGGACGTTTGAAGACCAAGCTGCCCAACATTC
CGCCGGACACGAAGCTCTCCAAGTTGGACACGTTGCGTTTGGCCACGCTC
TACATCAAGCAGCTAATTACGGCTGTGGAGACAGGCAGCCACTCGCAGAA
CCACCCGCACAACCACAACCAGCACCACAGCCTCAACCACAGTCACTCGA
GTACCACCAGTTCCGAAGGCCTGGACACAAGTCACATGGCAGATTCGTCC
GGTGGAGGCAATTATAATTTCCACAACAACGGACACGGCATGAGCTGGCC
CTTTGAGTTCCACCAGAGTAGCCGGAGTTTGGCATTTGCCCCATCATCAT
CAACCACCTCATCCGCCCGTATGGATTGGCAAACCCTGCATACGCAATCT
TATCCGAAGACTACGCGAGGCGAAACCCATGTTTCGGCGGATCTAAGTTA
CCATCAGTTGCCGGAATCTCACAGTCACTGGTATCCGGCGGAAGTGCATC
AAATGGAGCCAGCGGCCAGCTGTTCCTATGACTCTGGAATGGGGCAGCAT
CAGCGGGGCATAGCTATAGCCACTAGCCATGCCCATGGCATTGCAAGCTT
TCTAGACCAT
BO21313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH54F-RA | 729 | CG5005-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH54F-RA | 1078 | CG5005-RA | 171..896 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17758087..17758436 | 93..442 | 1750 | 100 | Plus |
| 2R | 25286936 | 2R | 17760035..17760335 | 442..742 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 17757575..17757651 | 17..93 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:23:20 has no hits.
BO21313.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 12:13:30 Download gff for
BO21313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH54F-RA | 159..884 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:31 Download gff for
BO21313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH54F-RA | 171..896 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:30 Download gff for
BO21313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH54F-RA | 171..896 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:30 Download gff for
BO21313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17760036..17760335 | 443..744 | 99 | | Plus |
| 2R | 17757575..17757650 | 17..92 | 100 | -> | Plus |
| 2R | 17758087..17758436 | 93..442 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:31 Download gff for
BO21313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13645080..13645155 | 17..92 | 100 | -> | Plus |
| arm_2R | 13645592..13645941 | 93..442 | 100 | -> | Plus |
| arm_2R | 13647541..13647840 | 443..744 | 99 | | Plus |
BO21313.pep Sequence
Translation from 16 to 760
> BO21313.pep
MPRKKRSSSPTEFFDDDFDEDASSQSSQPPVQRNAANARERMRMRVLSSA
YGRLKTKLPNIPPDTKLSKLDTLRLATLYIKQLITAVETGSHSQNHPHNH
NQHHSLNHSHSSTTSSEGLDTSHMADSSGGGNYNFHNNGHGMSWPFEFHQ
SSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADLSYHQLPE
SHSHWYPAEVHQMEPAASCSYDSGMGQHQRGIAIATSHAHGIASFLDH
BO21313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH54F-PA | 242 | CG5005-PA | 1..242 | 1..242 | 1297 | 100 | Plus |
| Hand-PA | 174 | CG18144-PA | 59..115 | 32..88 | 150 | 47.4 | Plus |
