BO21404.complete Sequence
1381 bp assembled on 2010-10-13
> BO21404.complete
GAAGTTATCAGTCGACATGATGCTAATGCACGAGAAACTCATGGCCGGGC
AGTTCTTCGATCTCAAGACTGATCGCAAGCCCCTGATGCACCACCACCAG
TACCAGCACCACCAGCAGCAACCACTGCACCACTTGCCGCACAGCCAATT
GCCGGTTCAGGGATCCTTGGGCCTACCCAAAATGGATCTGTACACGGCCT
ACGCCTACCAGCAGCAGTTGCTGGGAGCTGCCCTCAGTCAGCAGCAACAA
CAGCAACAGCAGCAGCAGCAACATCAGCAGCTGCAGCAGCAGCATACCTC
CTCTGCAGAGGTCCTGGATCTTTCCCGTCGATGTGACAGCGTAGAGACAC
CCAGGAAGACTCCCTCGCCGTATCAAACAAGCTATAGCTACGGCAGTGGT
TCCCCCTCGGCTTCGCCCACCAGCAATCTTCTGTATGCCGCCCAAATGCA
ACAGCAGCAACATCAGCAGCAACAACAGCAACAGCAGCAGCAGCAACAAT
TAGCCTCCCTGTATCCCGCTTTTTACTACAGCAACATCAAGCAGGAGCAA
GCCACGCCCACTGCTGCTCCGCCCAAGGTTACACCAACCGCTAACCTTCT
GCAAACCTTTGCTGCCGCCTCTGCTGCGGCCGCCGCTGCTGCTGCCGCTT
CTTCGACCAACTCACCAAGACCCGCCAGCAACGCCAGCACCATGCAGATA
GACGTTCTGGAGAATCCCCTGTCACCGGCTGTTGAGGCCACCACGCCAAC
CACCTCCAGCAGCGGCGAGGCGGGAAAGAACACCCGTCCCTTCAAGGCCT
TTCCCCGGGATCCCTTGGTCATAGCTGCCAATTTCGCAGCCACTGATGTC
CTTTTGGACAATCCGCGAGTGGAGCGCTACACGGAATACCGGAAGCGAGT
GCTTGAGCAAATCCGCAGCTCCAACGGAGGATCGCGCACCGTAACCAACC
CAAAAATGCGAAGGACCAACTCAAGAAGTGGATCCGTCAACGAAGGCAGC
TCCTCAAACAACAACAGCGAAAGCGAGGATCGCGCTGCTGCGGAGGAGTC
AAGCGACTGTGACTCCCAGGCGGGCAACTTCGAGAGCAAGTCCGCCACCA
GCAGCTCCAGCAACTTGGCTAACGCTACTGCAGCAAACTCGGGCATCAGC
TCGGGCAGCCAGGTTAAGGATGCCGCATACTACGAGAGGCGTCGCAAGAA
CAATGCTGCCGCCAAGAAGTCCCGCGATCGCCGCCGCATCAAGGAGGATG
AGATCGCCATCAGGGCCGCCTATCTGGAACGCCAGAACATCGAGCTCTTG
TGCCAGATCGACGCCCTCAAGGTCCAGCTGGCCGCCTTCACCTCCGCCAA
AGTAACCACCGCCGCAAGCTTTCTAGACCAT
BO21404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gt-RB | 1347 | CG7952-PB | 1..1344 | 20..1363 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gt-RB | 1780 | CG7952-RB | 116..1459 | 20..1363 | 6720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2427434..2428726 | 1363..71 | 6465 | 100 | Minus |
| X | 23542271 | X | 6950774..6951010 | 1127..1363 | 1095 | 97.5 | Plus |
| X | 23542271 | X | 2428801..2428852 | 71..20 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2387 | 649..609 | 115 | 75.6 | Minus |
BO21404.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-13 16:24:55 Download gff for
BO21404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 109..1455 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:27:59 Download gff for
BO21404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 113..1459 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:15 Download gff for
BO21404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 113..1459 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:15 Download gff for
BO21404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2427432..2428725 | 72..1365 | 99 | <- | Minus |
| X | 2428801..2428855 | 17..71 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:27:59 Download gff for
BO21404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2321465..2322758 | 72..1365 | 99 | <- | Minus |
| arm_X | 2322834..2322888 | 17..71 | 96 | | Minus |
BO21404.pep Sequence
Translation from 16 to 1381
> BO21404.pep
MMLMHEKLMAGQFFDLKTDRKPLMHHHQYQHHQQQPLHHLPHSQLPVQGS
LGLPKMDLYTAYAYQQQLLGAALSQQQQQQQQQQQHQQLQQQHTSSAEVL
DLSRRCDSVETPRKTPSPYQTSYSYGSGSPSASPTSNLLYAAQMQQQQHQ
QQQQQQQQQQQLASLYPAFYYSNIKQEQATPTAAPPKVTPTANLLQTFAA
ASAAAAAAAAASSTNSPRPASNASTMQIDVLENPLSPAVEATTPTTSSSG
EAGKNTRPFKAFPRDPLVIAANFAATDVLLDNPRVERYTEYRKRVLEQIR
SSNGGSRTVTNPKMRRTNSRSGSVNEGSSSNNNSESEDRAAAEESSDCDS
QAGNFESKSATSSSSNLANATAANSGISSGSQVKDAAYYERRRKNNAAAK
KSRDRRRIKEDEIAIRAAYLERQNIELLCQIDALKVQLAAFTSAKVTTAA
SFLDH
BO21404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gt-PB | 448 | CG7952-PB | 1..448 | 2..449 | 2262 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 59..307 | 28..237 | 202 | 30.7 | Plus |
| Smr-PE | 3601 | CG4013-PE | 59..307 | 28..237 | 202 | 30.7 | Plus |
| Smr-PD | 3601 | CG4013-PD | 59..307 | 28..237 | 202 | 30.7 | Plus |
| ASPP-PA | 1020 | CG18375-PA | 165..579 | 15..451 | 197 | 24.6 | Plus |
| Smr-PF | 3601 | CG4013-PF | 515..826 | 27..379 | 167 | 24.9 | Plus |
| Smr-PE | 3601 | CG4013-PE | 515..826 | 27..379 | 167 | 24.9 | Plus |
| Smr-PD | 3601 | CG4013-PD | 515..826 | 27..379 | 167 | 24.9 | Plus |
