BO21428.complete Sequence
3391 bp assembled on 2010-10-20
GenBank Submission: KX794982
> BO21428.complete
GAAGTTATCAGTCGACATGATGCTGAATAAACACGAGGGATACCAACGCA
CAAGCCAAATGTTTCCCCACCAGCAGCACCAGCTGCCTCAGCTGCACCAG
CAGCCTTATCTGCAACAGTCTCTGTGCCAAAACTTCCAGCAATTGCAGTA
CGAAACGGGAGTAGGTGCTTCGGCGTCAGGGTCCGCCGAGGCTACGGCAG
ACCTGCTCAAGGCGGAGCGGGAGTCTATCCACTCCGGCCAGTTTATGGTC
TCGCACTTCGAGGCAGAGGAGGCGCAGGACGACCTAGAGGATGACGGCGA
GGTGAAGATGCTAGACCCTGAGGACCCCGGTCTGGGCAAGCCGGGCGAGC
CAACCAACACATGTCGTGACGTGCAGCTTTACGTACCCCAAACAGTGGCC
CACTTCAGCGCCATGGACCAGGAGGGCGACGAGAGCAGCATGAGCATGGT
GACCTCCCACCTGGAGATAGAGACCTCGCTCACCAAACTCTTCAAGTGCA
TGAATCTGGCCTACAGTCAAAAACTAACCTCACCCAAATGGAATCATTTC
AAAGGAGTACGACTTCGGTGGAAGGACAAAATTCGCCTGAACAATGTCAT
CTGGCGTTGCTGGCACATGCAGTTCATACAAAAGCGCAGAACCCCGGTGT
GTCAATTTGCGTCGCCGCTGGACGTTGATATACATAGTAATCCTCAAACT
GTTGTTCTTGAAGGCAAATACTGGAAACGGCACTCAGCTGTTATAAAAGC
CGAATACAGGAAATGGCGCAGGAACTATAGGTCGAAGGCTACGGGCTGCT
TAACATATGATTCGAAAAGCGAATTAGACTTTTTGGAATGGTCGCCTCTG
AACGATAGGAACTTAATGCCAGACGATTGGACCACAGACACCTTATTCTC
GGCTATAAACGTTCCATTCCCATTTCCAGATTCTAGGGAAATCGCACGCG
GCGCGGGCATCGCGGACTTTATACAGCCCAGTCTTGGTCCCTTGCAACCG
AATTTAGATGACATCGACATTAGCTTTTCAGACTTGATTCCAACCACACG
CTTGCCTCCAGTTCCAGAAGAGGGAACCGACGCTGAAATGCTCAAAAACG
ACGAATATTGCCTGTCAGCGATTGTCGGTGCTCCTCATACGCTGTATTGC
AACGATAGCATAATGGATGTGGTAAACAGCAGTAACAATGGCGCTGTAAA
TGTAGATGCTAGCATGCTTGAGCTTAACACGCCCATAAATAACGTATCGT
ACGGTGAGGTAGAGCAACGATTTTCTGTTGCACGGCAGGTGCAGCAATCC
AACAATGATTCTCAGCTTCTCGGAGACTCGGGTTCAATGTCCGGACGAAT
ACACGGAGGCAAGCATTTTGGACCTGCTAGCGCAAACGACAACAACACCA
ATAGGTGTGTTATAAACGGTCGCGTGGCCAAGAGCACTCAGCGGCCATTC
CGACGCGAGCCCCACAATTATGACAAGGCCCAGCCCACAATGCACCAGAC
GAACCTGTATCAGCAAATGTTGGCCGAACAACAGAAGAACCAGCAGCAGC
AACACGTGGTAGTGTCTTCATTTCAGGCTTCCCAACAACAGCAGCTCGCT
CAACAGCAACCCTTTTCGGCCCAGGCAACAAACGCCTTCAATAATCAGAG
TTTTATTAGCAGTTACGCAGATAACTATCAGCATCAGCAGCAACTCAACG
TCAAGGTAGAACCTCTACATGCCGATGTGCTGTCATTACTAAACGACAAT
GCATACAACTCTATTGGCTACAAGCCCTATCCGCAATTTAAGAAGTCCGC
CTCGACGGGAACTTTTCTTAATGTCCCCAGGCAGACGCAGCAGCAGCAAA
GTTATCTGCAGCAAGAGCCCCCGCAAATGCAACAGTCCCTTCCCGTAGGC
ATGGGAAATCAACAAATTTTGCAGCTTACGCGTCAGCAGCAGGTTAACAA
TACACAGCAACAGCAGCACCAATCCACAGTGGCTAGCTTGTTGCAGCAGC
AGCACCAGCAGCAAAACCATCAGCAACAGCAACTACAGACTGCTGTCAGC
TCAGCCACATGGGTTTCGCCAAACACCATTTTGCCTAAAGAAATCTACCG
CTCCAACAGCTTACCACTGAATGTTTCCCTTAATAAACTACCCGATGGTC
GCCAGCTGCATCATGAGCAGCCCTTCGCAGTGCCCAAGTATCACTCCAAA
AGCAAGTCGAGGGTGCGGAGTAATTCGATGCACCAGCAACACACTTCAGT
GGTGTCTGCTGCTGGAGCGGGAAGTTCTTCATTAGGCGCACATAGTTGCA
GCAACCTGCTGGTCACTCAGCAAATGCAGCAGGCAACCAGCGATCCCATG
CTAAACAGCACCCTGGCTCAACTGCTCACTTCGAATTCACGCCTACAAAC
AGCAGTGGCGAACAGTTCGTCATCAAATTCACCTTCCGTCAGTGCCATAG
CCACCACTAACAGCAACAGCAATGCGCCTCCGGTTCATTACGCTAACGTC
ACATCGCCGTTGTCGGTTCCGGTGCCAACACATCAACACTCACCAAAAAA
GTCCGCCTCCTTGCCTATGGCTGTCAACTCTGCATTGCACAGTCCCCCTC
TAGGAAGTAAAATACACGGTATTGGGCTGGCCACAGCTAACGTGGGCAGT
AATAGCTTGAGTTTGTCACCGGAATCGACGTTCCACGAGTCACAGGATTC
CCCACTGTCTCCTACAACCAGCCTAAAATTCCAGCCGCGAGACACGCAGC
GTCGTGCTGGCCATATCCACGCCGAGCAGAAGCGGCGTTACAACATAAAG
AACGGATTTGACACTCTGCACGCGCTCATACCACAGCTTCAGCTAAATCC
CAACGCCAAGTTAAGTAAGGCAGCCATGCTACAAAAGGGAGCGGACCACA
TAAAGCAACTGCGACAGGAGCGCAATGTTTTAAAGGATAAAATTGAAGCT
TTGCGCATGGAGCGAGACGAGCTAAACAATTCGCTGACGCACCTTCACTC
AATTTTGCCAGCTAATGGAGCGCCTGTAACGAGGCAGGGTACAGAACATG
TTCGGCAGCTTTACGACATTTATGTACGATACAATACAATGAACGACTGG
AAATTTTGGATTTTGGGTCTCATTCTGGAACCTTTGCTTGCCTCTTACAC
GTCAACAGTCTCGAGTGCTAGTCTTGATGAGCTACGTCGGACCGCTTTTC
TTTGGGTTGATCAGCACTGTTCCCTTATTGATCTTCGTCCAGCTGTTACA
AATAAATTAAAGTATCTATCTATGCATACGGATATTGTTTCGGAGCCACC
AAGTACATTGCAAGAGGAGGTGGCCAAAGCCCTCCAGAATTCAAGTGGCC
AGCATCCAAATCTGCATGGACCCGCAAGCTTTCTAGACCAT
BO21428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-RM | 3360 | CG18362-PM | 1..3357 | 17..3373 | 16785 | 100 | Plus |
| Mio-RL | 3360 | CG18362-PL | 1..3357 | 17..3373 | 16785 | 100 | Plus |
| Mio-RK | 3360 | CG18362-PK | 1..3357 | 17..3373 | 16785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-RM | 4068 | CG18362-RM | 495..3851 | 17..3373 | 16785 | 100 | Plus |
| Mio-RL | 3832 | CG18362-RL | 259..3615 | 17..3373 | 16785 | 100 | Plus |
| Mio-RK | 3830 | CG18362-RK | 257..3613 | 17..3373 | 16785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21288052..21289411 | 2384..1025 | 6785 | 99.9 | Minus |
| 2L | 23513712 | 2L | 21287390..21287994 | 2989..2385 | 3025 | 100 | Minus |
| 2L | 23513712 | 2L | 21308288..21308787 | 516..17 | 2500 | 100 | Minus |
| 2L | 23513712 | 2L | 21286295..21286427 | 3373..3241 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 21289615..21289745 | 944..814 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 21286489..21286618 | 3242..3113 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 21287204..21287327 | 3112..2989 | 620 | 100 | Minus |
| 2L | 23513712 | 2L | 21297695..21297811 | 814..698 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 21304825..21304936 | 623..512 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 21289462..21289549 | 1031..944 | 440 | 100 | Minus |
| 2L | 23513712 | 2L | 21301454..21301527 | 697..624 | 370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2546 | 1831..2035 | 245 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2824 | 1490..2059 | 223 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6961 | 1838..2047 | 203 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2647 | 1482..1554 | 150 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6864 | 1481..1608 | 135 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1186 | 1492..1619 | 134 | 59.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1149 | 1485..1554 | 125 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6920 | 1492..1694 | 119 | 54.7 | Plus |
BO21428.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:32 Download gff for
BO21428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RA | 202..3558 | 17..3375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:05 Download gff for
BO21428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RK | 257..3613 | 17..3375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:45 Download gff for
BO21428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RK | 257..3613 | 17..3375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:45 Download gff for
BO21428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21289462..21289548 | 945..1031 | 100 | <- | Minus |
| 2L | 21289615..21289744 | 815..944 | 100 | <- | Minus |
| 2L | 21297695..21297811 | 698..814 | 100 | <- | Minus |
| 2L | 21301454..21301527 | 624..697 | 100 | <- | Minus |
| 2L | 21304825..21304931 | 517..623 | 100 | <- | Minus |
| 2L | 21286293..21286425 | 3243..3375 | 98 | <- | Minus |
| 2L | 21286489..21286618 | 3113..3242 | 100 | <- | Minus |
| 2L | 21287204..21287327 | 2989..3112 | 100 | <- | Minus |
| 2L | 21287391..21287994 | 2385..2988 | 100 | <- | Minus |
| 2L | 21288052..21289404 | 1032..2384 | 100 | <- | Minus |
| 2L | 21308288..21308787 | 17..516 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:05 Download gff for
BO21428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21286293..21286425 | 3243..3375 | 98 | <- | Minus |
| arm_2L | 21286489..21286618 | 3113..3242 | 100 | <- | Minus |
| arm_2L | 21287204..21287327 | 2989..3112 | 100 | <- | Minus |
| arm_2L | 21287391..21287994 | 2385..2988 | 100 | <- | Minus |
| arm_2L | 21288052..21289404 | 1032..2384 | 100 | <- | Minus |
| arm_2L | 21289462..21289548 | 945..1031 | 100 | <- | Minus |
| arm_2L | 21289615..21289744 | 815..944 | 100 | <- | Minus |
| arm_2L | 21297695..21297811 | 698..814 | 100 | <- | Minus |
| arm_2L | 21301454..21301527 | 624..697 | 100 | <- | Minus |
| arm_2L | 21304825..21304931 | 517..623 | 100 | <- | Minus |
| arm_2L | 21308288..21308787 | 17..516 | 100 | | Minus |
BO21428.pep Sequence
Translation from 16 to 3391
> BO21428.pep
MMLNKHEGYQRTSQMFPHQQHQLPQLHQQPYLQQSLCQNFQQLQYETGVG
ASASGSAEATADLLKAERESIHSGQFMVSHFEAEEAQDDLEDDGEVKMLD
PEDPGLGKPGEPTNTCRDVQLYVPQTVAHFSAMDQEGDESSMSMVTSHLE
IETSLTKLFKCMNLAYSQKLTSPKWNHFKGVRLRWKDKIRLNNVIWRCWH
MQFIQKRRTPVCQFASPLDVDIHSNPQTVVLEGKYWKRHSAVIKAEYRKW
RRNYRSKATGCLTYDSKSELDFLEWSPLNDRNLMPDDWTTDTLFSAINVP
FPFPDSREIARGAGIADFIQPSLGPLQPNLDDIDISFSDLIPTTRLPPVP
EEGTDAEMLKNDEYCLSAIVGAPHTLYCNDSIMDVVNSSNNGAVNVDASM
LELNTPINNVSYGEVEQRFSVARQVQQSNNDSQLLGDSGSMSGRIHGGKH
FGPASANDNNTNRCVINGRVAKSTQRPFRREPHNYDKAQPTMHQTNLYQQ
MLAEQQKNQQQQHVVVSSFQASQQQQLAQQQPFSAQATNAFNNQSFISSY
ADNYQHQQQLNVKVEPLHADVLSLLNDNAYNSIGYKPYPQFKKSASTGTF
LNVPRQTQQQQSYLQQEPPQMQQSLPVGMGNQQILQLTRQQQVNNTQQQQ
HQSTVASLLQQQHQQQNHQQQQLQTAVSSATWVSPNTILPKEIYRSNSLP
LNVSLNKLPDGRQLHHEQPFAVPKYHSKSKSRVRSNSMHQQHTSVVSAAG
AGSSSLGAHSCSNLLVTQQMQQATSDPMLNSTLAQLLTSNSRLQTAVANS
SSSNSPSVSAIATTNSNSNAPPVHYANVTSPLSVPVPTHQHSPKKSASLP
MAVNSALHSPPLGSKIHGIGLATANVGSNSLSLSPESTFHESQDSPLSPT
TSLKFQPRDTQRRAGHIHAEQKRRYNIKNGFDTLHALIPQLQLNPNAKLS
KAAMLQKGADHIKQLRQERNVLKDKIEALRMERDELNNSLTHLHSILPAN
GAPVTRQGTEHVRQLYDIYVRYNTMNDWKFWILGLILEPLLASYTSTVSS
ASLDELRRTAFLWVDQHCSLIDLRPAVTNKLKYLSMHTDIVSEPPSTLQE
EVAKALQNSSGQHPNLHGPASFLDH
BO21428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-PM | 1119 | CG18362-PM | 1..1119 | 1..1119 | 5846 | 100 | Plus |
| Mio-PL | 1119 | CG18362-PL | 1..1119 | 1..1119 | 5846 | 100 | Plus |
| Mio-PK | 1119 | CG18362-PK | 1..1119 | 1..1119 | 5846 | 100 | Plus |
| Mio-PJ | 1119 | CG18362-PJ | 1..1119 | 1..1119 | 5846 | 100 | Plus |
| Mio-PI | 1119 | CG18362-PI | 1..1119 | 1..1119 | 5846 | 100 | Plus |
