BO21718.complete Sequence
814 bp assembled on 2009-12-07
GenBank Submission: KX799088
> BO21718.complete
GAAGTTATCAGTCGACATGTTCGAGGCACGCCTGGGTCAAGCCACCATCC
TGAAGAAGATCTTGGATGCCATCAAGGATCTGCTCAATGAGGCAACCTTC
GATTGCAGCGACTCCGGCATTCAGCTACAGGCCATGGACAACTCCCATGT
GTCGCTTGTCTCGCTGACCCTGCGTTCCGATGGCTTCGACAAGTTTCGCT
GCGACCGCAATCTCTCCATGGGCATGAATCTGGGCAGCATGGCCAAGATT
CTGAAATGCGCCAACAACGAGGACAATGTGACGATGAAGGCGCAGGATAA
CGCCGACACTGTCACCATCATGTTCGAATCGGCTAACCAGGAGAAGGTAT
CGGACTACGAGATGAAACTGATGAACCTCGACCAGGAGCACCTGGGCATA
CCGGAGACAGACTTCTCGTGCGTGGTCCGCATGCCGGCCATGGAGTTCGC
TCGCATCTGCCGCGATCTGGCGCAGTTCAGCGAATCCGTTGTGATCTGCT
GCACCAAGGAGGGCGTCAAGTTCTCGGCCAGCGGCGATGTGGGCACCGCC
AACATTAAGCTAGCCCAAACCGGCTCTGTCGACAAGGAGGAGGAGGCGGT
GATCATCGAGATGCAGGAGCCGGTGACGCTGACATTTGCCTGTCGCTACC
TGAACGCCTTCACAAAGGCGACGCCATTGTCCACCCAAGTGCAGCTGTCG
ATGTGCGCAGATGTTCCGCTGGTAGTCGAGTATGCGATCAAGGATCTGGG
TCACATTCGCTACTACCTGGCACCCAAGATCGAGGACAACGAGACAGCAA
GCTTTCTAGACCAT
BO21718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCNA-RA | 783 | CG9193-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
| PCNA-RB | 783 | CG9193-PB | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCNA-RA | 1070 | CG9193-RA | 163..942 | 17..796 | 3900 | 100 | Plus |
| PCNA-RB | 997 | CG9193-RB | 90..869 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20261882..20262556 | 796..122 | 3375 | 100 | Minus |
| 2R | 25286936 | 2R | 20262614..20262721 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:56:15 has no hits.
BO21718.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:35 Download gff for
BO21718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus209-RA | 142..916 | 22..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:18 Download gff for
BO21718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus209-RB | 95..869 | 22..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:01 Download gff for
BO21718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PCNA-RB | 95..869 | 22..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:01 Download gff for
BO21718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20261880..20262553 | 125..798 | 99 | <- | Minus |
| 2R | 20262614..20262716 | 22..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:18 Download gff for
BO21718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16149385..16150058 | 125..798 | 99 | <- | Minus |
| arm_2R | 16150119..16150221 | 22..124 | 100 | | Minus |
BO21718.pep Sequence
Translation from 16 to 814
> BO21718.pep
MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSL
TLRSDGFDKFRCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVT
IMFESANQEKVSDYEMKLMNLDQEHLGIPETDFSCVVRMPAMEFARICRD
LAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQ
EPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYY
LAPKIEDNETASFLDH
BO21718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PCNA-PA | 260 | CG9193-PA | 1..260 | 1..260 | 1324 | 100 | Plus |
| PCNA-PB | 260 | CG9193-PB | 1..260 | 1..260 | 1324 | 100 | Plus |
| CG10262-PA | 255 | CG10262-PA | 1..252 | 1..257 | 788 | 55.3 | Plus |
