BO21719.complete Sequence
818 bp assembled on 2011-06-29
> BO21719.complete
GAAGTTATCAGTCGACATGCTGGACAAGGTTAAAAATGTTATCGTAGTGC
TATCAGGCAAGGGCGGAGTAGGAAAATCCACAGTGAGCACCCAATTATCG
CTGGCACTGCGAAAAAACGGATTTAAGGTTGGTCTGCTCGATATAGATCT
GTGTGGACCGAGTGTGCCATATCTATTGGGTCTGGAAGGACGGGATATCT
TCCAGTGCGACGATGGATGGGTTCCTGTCTATACAGATGAATCCCAAACC
TTGGCGGTGATGTCCATTGGATTTTTATTGAAGAACCGTGAGGATCCGGT
CATTTGGCGTGGTCCCAAAAAGACCATGATGATCCGGCAGTTCCTCACCG
ACGTCAGGTGGGATGAGCTGGATTACCTAATTATCGATACGCCACCCGGC
ACTTCGGATGAGCACATCACCGTAATGGAGTGCCTGAAGGAGGTTGGTTG
CCACGGAGCCATAATTGTGACCACACCGCAGGAGGTGGCCCTGGACGATG
TACGCAAGGAGATCACCTTCTGCAAGAAGACCGGCATCAATATCCTGGGC
ATCGTCGAGAATATGAGTGGGTTCGTGTGCCCCCATTGCACCTCGTGCAC
CAATATATTCTCGTCAAACGGTGGCGTCTCACTGGCCACTTACGCCCAAG
TACCACATCTAGGAACTCTGCCCATAGATCCCCGTGTTGGCATTTTGGCG
GGCACCACTACGTCCGTCTTGGATGAGCTTCCGGATTCCACGACAGCGGA
GGTGCTGACGCATATAGTTGAGAAGTTGAAAACGATGTTGGTCTCCGCAA
GCTTTCTAGACCATTCGT
BO21719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4858-RA | 783 | CG4858-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4858-RA | 950 | CG4858-RA | 79..858 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20526836..20527282 | 126..572 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 20527592..20527818 | 570..796 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 20526654..20526766 | 17..129 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:39:12 has no hits.
BO21719.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:34 Download gff for
BO21719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4858-RA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:24 Download gff for
BO21719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4858-RA | 58..840 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:15 Download gff for
BO21719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4858-RA | 79..861 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:10 Download gff for
BO21719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4858-RA | 79..861 | 17..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:10 Download gff for
BO21719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20526654..20526764 | 17..127 | 100 | -> | Plus |
| 3L | 20526838..20527280 | 128..570 | 100 | -> | Plus |
| 3L | 20527593..20527821 | 571..802 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:15 Download gff for
BO21719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20520693..20520921 | 571..802 | 98 | | Plus |
| arm_3L | 20519754..20519864 | 17..127 | 100 | -> | Plus |
| arm_3L | 20519938..20520380 | 128..570 | 100 | -> | Plus |
BO21719.pep Sequence
Translation from 16 to 817
> BO21719.pep
MLDKVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSV
PYLLGLEGRDIFQCDDGWVPVYTDESQTLAVMSIGFLLKNREDPVIWRGP
KKTMMIRQFLTDVRWDELDYLIIDTPPGTSDEHITVMECLKEVGCHGAII
VTTPQEVALDDVRKEITFCKKTGINILGIVENMSGFVCPHCTSCTNIFSS
NGGVSLATYAQVPHLGTLPIDPRVGILAGTTTSVLDELPDSTTAEVLTHI
VEKLKTMLVSASFLDHS
BO21719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4858-PA | 260 | CG4858-PA | 1..260 | 1..260 | 1355 | 100 | Plus |
| CG17904-PA | 311 | CG17904-PA | 54..306 | 5..254 | 556 | 47.9 | Plus |
| CG3262-PE | 293 | CG3262-PE | 38..279 | 5..258 | 361 | 34.3 | Plus |
| CG3262-PD | 293 | CG3262-PD | 38..279 | 5..258 | 361 | 34.3 | Plus |
| CG3262-PF | 207 | CG3262-PF | 19..193 | 75..258 | 224 | 31 | Plus |
