BO21734.complete Sequence
1162 bp assembled on 2010-01-08
GenBank Submission: KX798112
> BO21734.complete
GAAGTTATCAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGC
CCGAGGAGCTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTG
GAACAACCGCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACT
GCAGTCGGAACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACC
AGCTGAGCGTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCC
AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGA
TGACGACGATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGC
GCGCCCGGCTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTC
GAGAAGGAGCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGT
TCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTT
ATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATT
AACACCTACAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAA
TATGCCCAGAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGG
CCATGGATCGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGG
AAGCGGAAAATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGC
CTTGCAGAACTACGAACGCATGAATCTGGCGGATGCCTTGGTTTCGAAGA
GCTACGACAATGGCGAACGCATCATCAAACAGGGTGACGCCGCCGACGGC
ATGTACTTCATTGAGGAGGGAACGGTGTCCGTGCGCATGGACCAGGACGA
CGCCGAGGTGGAGATCTCCCAGCTGGGCAAGGGACAGTACTTCGGCGAGC
TGGCGCTGGTGACACATCGACCCCGGGCAGCATCCGTCTACGCCACGGGC
GGCGTCGTCAAGCTAGCATTCCTGGATGTTATTTGCTTCGAACGCTTAAT
GGGAAAGTGTAGTGGGGGCATTCAGCGTAGCATTAGTGGATATCGCTATC
TGGAACAGGATCTGCGCGAATATTTCGGCAACTTGCCGCTTAATGCAAGC
TTTCTAGACCAT
BO21734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RE | 1131 | CG15862-PE | 1..1128 | 17..1144 | 5640 | 100 | Plus |
| Pka-R2-RB | 1134 | CG15862-PB | 1..1013 | 17..1029 | 5050 | 99.9 | Plus |
| Pka-R2-RA | 1134 | CG15862-PA | 1..1013 | 17..1029 | 5050 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RE | 2102 | CG15862-RE | 510..1637 | 17..1144 | 5640 | 100 | Plus |
| Pka-R2-RB | 4108 | CG15862-RB | 374..1386 | 17..1029 | 5050 | 99.9 | Plus |
| Pka-R2-RA | 2157 | CG15862-RA | 353..1365 | 17..1029 | 5050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10005157..10005370 | 230..17 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 9997704..9997890 | 1019..833 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 9999734..9999916 | 412..230 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 9998415..9998564 | 757..608 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 9997427..9997551 | 1144..1020 | 625 | 100 | Minus |
| 2R | 25286936 | 2R | 9999425..9999529 | 513..409 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 9998707..9998802 | 609..514 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 9998269..9998349 | 835..755 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:24:35 has no hits.
BO21734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:33 Download gff for
BO21734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RE | 503..1630 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:42 Download gff for
BO21734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RE | 510..1637 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:40 Download gff for
BO21734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RE | 510..1637 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:40 Download gff for
BO21734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9997423..9997551 | 1020..1146 | 98 | <- | Minus |
| 2R | 9997704..9997889 | 834..1019 | 100 | <- | Minus |
| 2R | 9998271..9998346 | 758..833 | 100 | <- | Minus |
| 2R | 9998415..9998562 | 610..757 | 100 | <- | Minus |
| 2R | 9998707..9998802 | 514..609 | 100 | <- | Minus |
| 2R | 9999425..9999525 | 413..513 | 100 | <- | Minus |
| 2R | 9999734..9999915 | 231..412 | 100 | <- | Minus |
| 2R | 10005157..10005370 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:42 Download gff for
BO21734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5884928..5885056 | 1020..1146 | 98 | <- | Minus |
| arm_2R | 5885209..5885394 | 834..1019 | 100 | <- | Minus |
| arm_2R | 5885776..5885851 | 758..833 | 100 | <- | Minus |
| arm_2R | 5885920..5886067 | 610..757 | 100 | <- | Minus |
| arm_2R | 5886212..5886307 | 514..609 | 100 | <- | Minus |
| arm_2R | 5886930..5887030 | 413..513 | 100 | <- | Minus |
| arm_2R | 5887239..5887420 | 231..412 | 100 | <- | Minus |
| arm_2R | 5892662..5892875 | 17..230 | 100 | | Minus |
BO21734.pep Sequence
Translation from 16 to 1162
> BO21734.pep
MSSDSSRRIQVPEELKEVLLQFSISFLVEQPPDVIDYAVEYFTKLQSERP
SVSHTDQSTDDQLSVNSQDADAEPPVMASSRRKSVFAEAYDPEADDDDDG
ATAVFPKTDEQRARLVESVKNVLLFRSLEKEQMNQVLDAMFERKVQPGDF
IIRQGDDGDNFYVIESGVYKVYINDKHINTYNHTGLFGELALLYNMPRAA
TVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELLNSVPMLKALQNYE
RMNLADALVSKSYDNGERIIKQGDAADGMYFIEEGTVSVRMDQDDAEVEI
SQLGKGQYFGELALVTHRPRAASVYATGGVVKLAFLDVICFERLMGKCSG
GIQRSISGYRYLEQDLREYFGNLPLNASFLDH
BO21734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-PE | 376 | CG15862-PE | 1..376 | 1..376 | 1913 | 100 | Plus |
| Pka-R2-PB | 377 | CG15862-PB | 1..369 | 1..372 | 1758 | 94.4 | Plus |
| Pka-R2-PA | 377 | CG15862-PA | 1..369 | 1..372 | 1758 | 94.4 | Plus |
| Pka-R2-PD | 373 | CG15862-PD | 1..373 | 1..373 | 1744 | 93.3 | Plus |
| Pka-R1-PAC | 377 | CG42341-PAC | 26..369 | 15..359 | 599 | 39.4 | Plus |
