BO21741.complete Sequence
1336 bp assembled on 2012-04-24
GenBank Submission: KX799292
> BO21741.complete
GAAGTTATCAGTCGACATGAAAAACATCACCAGCTCGAGCACTTGCAGCA
CTGGGCTGCTGCAATTGCAGAACAACCTGAGCTGCAGCGAGTTGGAAGTT
GCCGAGAAGACAGAACAACAGGCAGTTGGACCCGGCACCATACCATCACC
GTGGACACCAGTGAATGCCGGTCCTCCAGGCGCACTTGGATCGGCAGACA
CAAATGGCATGGTGGATAGCAAAAACCTGGATGTCGGTGATATGAGCGAT
GACGAAAAGGACTTGTCATCCGCTGATGCCGAAGGTGTATGGAGTCCAGA
TATCGAGCAGAGCTTTCAAGAGGCTTTATCTATATATCCGCCGTGCGGAC
GTAGAAAAATCATTTTATCCGACGAGGGTAAAATGTACGGTCGCAACGAG
CTAATCGCACGATATATAAAACTGCGCACAGGCAAAACGAGAACCAGGAA
GCAAGTCAGTTCGCACATCCAAGTGCTGGCTCGCCGTAAACTCCGCGAGA
TCCAGGCGAAAATCAAAGTGCAATTCTGGCAACCTGGACTACAGCCAAGC
ACGTCCCAAGACATCAAGCCCTTCCCCCAGCCGCCGTATCCAGCTGGCAA
AACGTCGACTGCGGTTTCCGGGGACGAAACTGGAATTCCGCCCTCACAAT
TGCCCTGGGAAGGACGAGCCATTGCCACGCACAAATTCCGCTTACTCGAG
TTTACGGCGTTCATGGAAATCCAGAGAGATGAAATTTATCACCGGCATCT
ATTCGTTCAACTTGGCGGCAAGCCATCCTTTTCCGATCCATTGCTTGAGA
CTGTTGATATACGGCAAATATTCGACAAGTTTCCGGAGAAATCTGGGGGC
CTTAAAGATCTCTACGAAAAGGGTCCACAGAATGCGTTTTACCTAGTTAA
ATGCTGGGCGGACCTGAATACCGATCTAACAACCGGCAGCGAAACGGGTG
ATTTCTATGGCGTAACCAGCCAATACGAAAGCAACGAGAATGTCGTGCTC
GTGTGCTCCACAATCGTTTGCTCCTTTGGCAAGCAAGTGGTGGAGAAGGT
GGAAAGCGAGTACTCCCGACTAGAGAACAATCGCTACGTCTATCGCATTC
AACGCTCCCCCATGTGCGAGTACATGATCAACTTTATTCAGAAGCTGAAG
AACCTACCGGAACGCTATATGATGAACAGTGTGCTGGAAAACTTTACAAT
ATTGCAAGTAATGAGGGCCCGCGAGACGCAGGAGACACTGTTGTGCATAG
CCTATGTGTTTGAGGTGGCGGCCCAGAACAGCGGCACCACCCATCACATA
TACCGTCTAATTAAGGAAGCAAGCTTTCTAGACCAT
BO21741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sd-RM | 1308 | CG8544-PM | 1..1305 | 17..1318 | 6400 | 99.5 | Plus |
sd-RI | 1308 | CG8544-PI | 1..1305 | 17..1318 | 6400 | 99.5 | Plus |
sd-RH | 1308 | CG8544-PH | 1..1305 | 17..1318 | 6400 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sd-RM | 5331 | CG8544-RM | 790..2095 | 16..1318 | 6405 | 99.5 | Plus |
sd-RI | 3280 | CG8544-RI | 698..2003 | 16..1318 | 6405 | 99.5 | Plus |
sd-RH | 3237 | CG8544-RH | 655..1960 | 16..1318 | 6405 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15824042..15824280 | 973..1211 | 1165 | 99.2 | Plus |
X | 23542271 | X | 15823308..15823482 | 562..736 | 875 | 100 | Plus |
X | 23542271 | X | 15823750..15823924 | 798..972 | 860 | 99.4 | Plus |
X | 23542271 | X | 15819996..15820136 | 251..391 | 705 | 100 | Plus |
X | 23542271 | X | 15820422..15820553 | 389..520 | 660 | 100 | Plus |
X | 23542271 | X | 15819593..15819724 | 123..251 | 580 | 97.7 | Plus |
X | 23542271 | X | 15824335..15824445 | 1208..1318 | 555 | 100 | Plus |
X | 23542271 | X | 15814186..15814295 | 16..125 | 550 | 100 | Plus |
X | 23542271 | X | 15823619..15823681 | 737..799 | 315 | 100 | Plus |
X | 23542271 | X | 15823186..15823227 | 520..561 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:47:58 has no hits.
BO21741.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:22 Download gff for
BO21741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sd-RF | 271..818 | 17..561 | 99 | -> | Plus |
sd-RF | 834..1590 | 562..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:44 Download gff for
BO21741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sd-RI | 272..1576 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:17 Download gff for
BO21741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sd-RH | 656..1960 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:09 Download gff for
BO21741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sd-RH | 656..1960 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:09 Download gff for
BO21741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15823619..15823681 | 737..799 | 100 | -> | Plus |
X | 15820423..15820553 | 390..520 | 100 | -> | Plus |
X | 15823187..15823227 | 521..561 | 100 | -> | Plus |
X | 15823308..15823482 | 562..736 | 100 | -> | Plus |
X | 15823752..15823924 | 800..972 | 99 | -> | Plus |
X | 15814187..15814295 | 17..125 | 100 | -> | Plus |
X | 15819596..15819723 | 126..250 | 97 | -> | Plus |
X | 15819996..15820134 | 251..389 | 100 | -> | Plus |
X | 15824042..15824276 | 973..1207 | 99 | -> | Plus |
X | 15824335..15824445 | 1208..1320 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:17 Download gff for
BO21741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15714029..15714167 | 251..389 | 100 | -> | Plus |
arm_X | 15714456..15714586 | 390..520 | 100 | -> | Plus |
arm_X | 15717220..15717260 | 521..561 | 100 | -> | Plus |
arm_X | 15717341..15717515 | 562..736 | 100 | -> | Plus |
arm_X | 15717652..15717714 | 737..799 | 100 | -> | Plus |
arm_X | 15717785..15717957 | 800..972 | 99 | -> | Plus |
arm_X | 15708220..15708328 | 17..125 | 100 | -> | Plus |
arm_X | 15713629..15713756 | 126..250 | 97 | -> | Plus |
arm_X | 15718075..15718309 | 973..1207 | 99 | -> | Plus |
arm_X | 15718368..15718478 | 1208..1320 | 98 | | Plus |
BO21741.pep Sequence
Translation from 16 to 1336
> BO21741.pep
MKNITSSSTCSTGLLQLQNNLSCSELEVAEKTEQQAVGPGTIPSPWTPVN
AGPPGALGSADTNGMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSF
QEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSH
IQVLARRKLREIQAKIKVQFWQPGLQPSTSQDIKPFPQPPYPAGKTSTAV
SGDETGIPPSQLPWEGRAIATHKFRLLEFTAFMEIQRDEIYHRHLFVQLG
GKPSFSDPLLETVDIRQIFDKFPEKSGGLKDLYEKGPQNAFYLVKCWADL
NTDLTTGSETGDFYGVTSQYESNENVVLVCSTIVCSFGKQVVEKVESEYS
RLENNRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSVLENFTILQVMR
ARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKEASFLDH
BO21741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sd-PM | 435 | CG8544-PM | 1..435 | 1..434 | 2256 | 99.8 | Plus |
sd-PI | 435 | CG8544-PI | 1..435 | 1..434 | 2256 | 99.8 | Plus |
sd-PH | 435 | CG8544-PH | 1..435 | 1..434 | 2256 | 99.8 | Plus |
sd-PK | 440 | CG8544-PK | 1..440 | 1..434 | 2240 | 98.6 | Plus |
sd-PS | 440 | CG8544-PS | 1..440 | 1..434 | 2240 | 98.6 | Plus |