Clone BO21741 Report

Search the DGRC for BO21741

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:217
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptsd-RA
Protein status:BO21741.pep: Imported from assembly
Sequenced Size:1336

Clone Sequence Records

BO21741.complete Sequence

1336 bp assembled on 2012-04-24

GenBank Submission: KX799292

> BO21741.complete
GAAGTTATCAGTCGACATGAAAAACATCACCAGCTCGAGCACTTGCAGCA
CTGGGCTGCTGCAATTGCAGAACAACCTGAGCTGCAGCGAGTTGGAAGTT
GCCGAGAAGACAGAACAACAGGCAGTTGGACCCGGCACCATACCATCACC
GTGGACACCAGTGAATGCCGGTCCTCCAGGCGCACTTGGATCGGCAGACA
CAAATGGCATGGTGGATAGCAAAAACCTGGATGTCGGTGATATGAGCGAT
GACGAAAAGGACTTGTCATCCGCTGATGCCGAAGGTGTATGGAGTCCAGA
TATCGAGCAGAGCTTTCAAGAGGCTTTATCTATATATCCGCCGTGCGGAC
GTAGAAAAATCATTTTATCCGACGAGGGTAAAATGTACGGTCGCAACGAG
CTAATCGCACGATATATAAAACTGCGCACAGGCAAAACGAGAACCAGGAA
GCAAGTCAGTTCGCACATCCAAGTGCTGGCTCGCCGTAAACTCCGCGAGA
TCCAGGCGAAAATCAAAGTGCAATTCTGGCAACCTGGACTACAGCCAAGC
ACGTCCCAAGACATCAAGCCCTTCCCCCAGCCGCCGTATCCAGCTGGCAA
AACGTCGACTGCGGTTTCCGGGGACGAAACTGGAATTCCGCCCTCACAAT
TGCCCTGGGAAGGACGAGCCATTGCCACGCACAAATTCCGCTTACTCGAG
TTTACGGCGTTCATGGAAATCCAGAGAGATGAAATTTATCACCGGCATCT
ATTCGTTCAACTTGGCGGCAAGCCATCCTTTTCCGATCCATTGCTTGAGA
CTGTTGATATACGGCAAATATTCGACAAGTTTCCGGAGAAATCTGGGGGC
CTTAAAGATCTCTACGAAAAGGGTCCACAGAATGCGTTTTACCTAGTTAA
ATGCTGGGCGGACCTGAATACCGATCTAACAACCGGCAGCGAAACGGGTG
ATTTCTATGGCGTAACCAGCCAATACGAAAGCAACGAGAATGTCGTGCTC
GTGTGCTCCACAATCGTTTGCTCCTTTGGCAAGCAAGTGGTGGAGAAGGT
GGAAAGCGAGTACTCCCGACTAGAGAACAATCGCTACGTCTATCGCATTC
AACGCTCCCCCATGTGCGAGTACATGATCAACTTTATTCAGAAGCTGAAG
AACCTACCGGAACGCTATATGATGAACAGTGTGCTGGAAAACTTTACAAT
ATTGCAAGTAATGAGGGCCCGCGAGACGCAGGAGACACTGTTGTGCATAG
CCTATGTGTTTGAGGTGGCGGCCCAGAACAGCGGCACCACCCATCACATA
TACCGTCTAATTAAGGAAGCAAGCTTTCTAGACCAT

BO21741.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
sd-RM 1308 CG8544-PM 1..1305 17..1318 6400 99.5 Plus
sd-RI 1308 CG8544-PI 1..1305 17..1318 6400 99.5 Plus
sd-RH 1308 CG8544-PH 1..1305 17..1318 6400 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
sd-RM 5331 CG8544-RM 790..2095 16..1318 6405 99.5 Plus
sd-RI 3280 CG8544-RI 698..2003 16..1318 6405 99.5 Plus
sd-RH 3237 CG8544-RH 655..1960 16..1318 6405 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15824042..15824280 973..1211 1165 99.2 Plus
X 23542271 X 15823308..15823482 562..736 875 100 Plus
X 23542271 X 15823750..15823924 798..972 860 99.4 Plus
X 23542271 X 15819996..15820136 251..391 705 100 Plus
X 23542271 X 15820422..15820553 389..520 660 100 Plus
X 23542271 X 15819593..15819724 123..251 580 97.7 Plus
X 23542271 X 15824335..15824445 1208..1318 555 100 Plus
X 23542271 X 15814186..15814295 16..125 550 100 Plus
X 23542271 X 15823619..15823681 737..799 315 100 Plus
X 23542271 X 15823186..15823227 520..561 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:47:58 has no hits.

BO21741.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:22 Download gff for BO21741.complete
Subject Subject Range Query Range Percent Splice Strand
sd-RF 271..818 17..561 99 -> Plus
sd-RF 834..1590 562..1320 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:44 Download gff for BO21741.complete
Subject Subject Range Query Range Percent Splice Strand
sd-RI 272..1576 17..1320 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:17 Download gff for BO21741.complete
Subject Subject Range Query Range Percent Splice Strand
sd-RH 656..1960 17..1320 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:09 Download gff for BO21741.complete
Subject Subject Range Query Range Percent Splice Strand
sd-RH 656..1960 17..1320 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:09 Download gff for BO21741.complete
Subject Subject Range Query Range Percent Splice Strand
X 15823619..15823681 737..799 100 -> Plus
X 15820423..15820553 390..520 100 -> Plus
X 15823187..15823227 521..561 100 -> Plus
X 15823308..15823482 562..736 100 -> Plus
X 15823752..15823924 800..972 99 -> Plus
X 15814187..15814295 17..125 100 -> Plus
X 15819596..15819723 126..250 97 -> Plus
X 15819996..15820134 251..389 100 -> Plus
X 15824042..15824276 973..1207 99 -> Plus
X 15824335..15824445 1208..1320 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:17 Download gff for BO21741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15714029..15714167 251..389 100 -> Plus
arm_X 15714456..15714586 390..520 100 -> Plus
arm_X 15717220..15717260 521..561 100 -> Plus
arm_X 15717341..15717515 562..736 100 -> Plus
arm_X 15717652..15717714 737..799 100 -> Plus
arm_X 15717785..15717957 800..972 99 -> Plus
arm_X 15708220..15708328 17..125 100 -> Plus
arm_X 15713629..15713756 126..250 97 -> Plus
arm_X 15718075..15718309 973..1207 99 -> Plus
arm_X 15718368..15718478 1208..1320 98   Plus

BO21741.pep Sequence

Translation from 16 to 1336

> BO21741.pep
MKNITSSSTCSTGLLQLQNNLSCSELEVAEKTEQQAVGPGTIPSPWTPVN
AGPPGALGSADTNGMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSF
QEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSH
IQVLARRKLREIQAKIKVQFWQPGLQPSTSQDIKPFPQPPYPAGKTSTAV
SGDETGIPPSQLPWEGRAIATHKFRLLEFTAFMEIQRDEIYHRHLFVQLG
GKPSFSDPLLETVDIRQIFDKFPEKSGGLKDLYEKGPQNAFYLVKCWADL
NTDLTTGSETGDFYGVTSQYESNENVVLVCSTIVCSFGKQVVEKVESEYS
RLENNRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSVLENFTILQVMR
ARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKEASFLDH

BO21741.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
sd-PM 435 CG8544-PM 1..435 1..434 2256 99.8 Plus
sd-PI 435 CG8544-PI 1..435 1..434 2256 99.8 Plus
sd-PH 435 CG8544-PH 1..435 1..434 2256 99.8 Plus
sd-PK 440 CG8544-PK 1..440 1..434 2240 98.6 Plus
sd-PS 440 CG8544-PS 1..440 1..434 2240 98.6 Plus