BO21746.complete Sequence
1324 bp assembled on 2010-01-08
> BO21746.complete
GAAGTTATCAGTCGACATGAAGGCGACCAGTTGCAGACCAATTCCATTCA
TCAACTTTCGGATTGTAAGATATTTCTATCGGCCACGACGATTGAACAAG
TATTACGATATTTACAGAATAGCTGCCCTTGTGCGGGATCGCGCCTGTCT
CTTCACGTGCCAGCAGGCCTCGCAGAACCTGCAGCAGCAGCAGCCCCGCT
TTTATAGTGCGCCAGGTCGCAGGGCCGGCTTCTTCTCGCAGTTCTTCGAC
AACATGAAGGCGGAGATGGATAAGAACAAGGAGATCAAGGACAATATCCG
AAAGTTCCGTGAGGAGGCCCAGAAGCTGGAAGAATCGGATGCCCTGAAAT
CGGCGCGGCAAAAGTTTAACATTGTCGAATCGGAGGCGCAAAAGTCGTCT
AGCATGCTAAAGGAGCAGCTGGGCGCCATCAAGGAGCGCGTAGGCGATGT
TCTGGAGGACGCCAGCAAATCCCACCTGGCCAAAAAGGTTACCGAGGAGC
TCTCGAAGAAGGCTAGGGGGGTCAGCGACACGATCTCCGACACCAGTGGC
AAGCTGGGCCAGACCAGCGCATTCCAGGCTATCTCTAACACGACGACGAC
CATCAAGAAGGAGATGGACAGCGCGAGCATAGAGAATCGTGTCTATCGTG
CTCCTGCCAAGTTGCGAAAGCGCGTCCAGCTCGTCATGAGCGATAGTGAT
CGCGTTGTGGAGCCCAACACGGAAGCCACTGGTATGGAGCTGCACAAGGA
CTCCAAGTTCTACGAGTCGTGGGAGAACTTCAAGAACAACAATACCTACG
TGAACAAGGTGCTTGACTGGAAGGTTAAATACGACGAGTCCGAGAACCCT
GTTATTCGTGCCTCCCGCCTGCTGACCGATAAAGTGTCCGACGTCATGGG
TGGACTCTTTTCAAAGACAGAGCTTTCGGAAACGATGACGGAGCTGGTGA
AAATCGATCCGAGCTTTGATCAGAAGGATTTCCTCCGCGATTGCGAAACG
GACATCATTCCAAATATTCTGGAATCGATTGTCCGTGGGGATCTGGAGAT
TCTGAAGGATTGGTGCTTTGAGAGCACTTTCAATATTATCGCAAATCCCA
TTAAGGAGGCTAAGAAGGCCGGCGTGTACCTGGACTCCAAGATCCTCGAC
ATCGAGAACATTGAACTGGCAATGGGCAAGGTTATGGAGCAGGGCCCGGT
ACTGATTATCACGTTCCAAGCCCAGCAGATTATGTGCGTGCGGGACCAGA
AGAGTCAGGTCGTCGAGGGAGATCCGGAGAAGCCCAAGCCAAGCCCTCGC
AGGATTGCAAGCTTTCTAGACCAT
BO21746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-RA | 1380 | CG11779-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG11779-RE | 1287 | CG11779-PE | 4..1173 | 113..1282 | 5850 | 100 | Plus |
| CG11779-RB | 1287 | CG11779-PB | 4..1173 | 113..1282 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-RA | 2281 | CG11779-RA | 170..1439 | 13..1282 | 6335 | 99.9 | Plus |
| CG11779-RE | 2474 | CG11779-RE | 155..1324 | 113..1282 | 5850 | 100 | Plus |
| CG11779-RB | 2679 | CG11779-RB | 360..1529 | 113..1282 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19155247..19155798 | 1282..731 | 2760 | 100 | Minus |
| 3R | 32079331 | 3R | 19155863..19156406 | 733..190 | 2720 | 100 | Minus |
| 3R | 32079331 | 3R | 19159610..19159709 | 112..13 | 485 | 99 | Minus |
| 3R | 32079331 | 3R | 19156466..19156546 | 193..113 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:25:36 has no hits.
BO21746.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:42 Download gff for
BO21746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RC | 174..1463 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:06 Download gff for
BO21746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RA | 174..1446 | 17..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:05 Download gff for
BO21746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11779-RA | 174..1446 | 17..1289 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:05 Download gff for
BO21746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19151588..19151613 | 1283..1308 | 92 | <- | Minus |
| 3R | 19155247..19155797 | 732..1282 | 100 | <- | Minus |
| 3R | 19155865..19156402 | 194..731 | 100 | <- | Minus |
| 3R | 19156466..19156546 | 113..193 | 100 | <- | Minus |
| 3R | 19159610..19159705 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:06 Download gff for
BO21746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14977310..14977335 | 1283..1308 | 92 | <- | Minus |
| arm_3R | 14980969..14981519 | 732..1282 | 100 | <- | Minus |
| arm_3R | 14981587..14982124 | 194..731 | 100 | <- | Minus |
| arm_3R | 14982188..14982268 | 113..193 | 100 | <- | Minus |
| arm_3R | 14985332..14985427 | 17..112 | 100 | | Minus |
BO21746.pep Sequence
Translation from 16 to 1324
> BO21746.pep
MKATSCRPIPFINFRIVRYFYRPRRLNKYYDIYRIAALVRDRACLFTCQQ
ASQNLQQQQPRFYSAPGRRAGFFSQFFDNMKAEMDKNKEIKDNIRKFREE
AQKLEESDALKSARQKFNIVESEAQKSSSMLKEQLGAIKERVGDVLEDAS
KSHLAKKVTEELSKKARGVSDTISDTSGKLGQTSAFQAISNTTTTIKKEM
DSASIENRVYRAPAKLRKRVQLVMSDSDRVVEPNTEATGMELHKDSKFYE
SWENFKNNNTYVNKVLDWKVKYDESENPVIRASRLLTDKVSDVMGGLFSK
TELSETMTELVKIDPSFDQKDFLRDCETDIIPNILESIVRGDLEILKDWC
FESTFNIIANPIKEAKKAGVYLDSKILDIENIELAMGKVMEQGPVLIITF
QAQQIMCVRDQKSQVVEGDPEKPKPSPRRIASFLDH
BO21746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11779-PA | 459 | CG11779-PA | 1..422 | 1..422 | 2144 | 100 | Plus |
| CG11779-PE | 428 | CG11779-PE | 1..391 | 32..422 | 1969 | 99.7 | Plus |
| CG11779-PB | 428 | CG11779-PB | 1..391 | 32..422 | 1969 | 99.7 | Plus |
