BO21750.complete Sequence
1465 bp assembled on 2012-04-24
GenBank Submission: KX794498
> BO21750.complete
GAAGTTATCAGTCGACATGTCGAGTGCAGAAGACGGCGAGCTGGATCCCC
AAATTCAGATTGAACTGGAGAATCTCAATAGTGCAACCGATGAGATTAAT
AAGCTAGAAATCGAGCTAGAGGAGGCTAATTCCACCTTTCGCATCCTGTT
AAATGAATCTACACGCCGCCTTAAAGTTTCCTCCAAAAAGTTGGGCAACT
GCATAGAGAAGGCTAGACCCTACTACGAGGCATTGGACAAGGCACGCGAG
GCACAAATCGAATGCCAAAAAGCAGCGGTTAAGTTCCAGCGAGCTAATGA
AATCCATGCCGCAGCCAAGGAGACGGTGGCGCTTGCTGAGCAGCGTTTTA
TGTCCAACTCGCACGAATGGCAGTTCGACAATGCCTGGCAGGAGATGCTT
AACCATGCTACCCAGAAGGTGATGGATGCCGAAACGCAGAAAGCCGACTG
TCATGCTGAGCACCAGAGGCTCACCAAACTTTTTAACGCCGCCGAGCAAA
AGCTGCAACAGCTTGAGGATCGTTTTCGTCGTAGCATCAACAAGTCACGC
CCGTACTTCGAAGAGAAGCAGGTGTGTCAGGATCAGCTGCAGACACAAAA
AAACCGCATTCAGGAGCTGCAGCAGCAGGTGGCCGGTGCTAAGAGCACCT
ACTCCACGGCCTTACGCAATCTGGAGAGGATCAGTGAGGATATACATAGG
CAGAGGGGAGATTTTCCCACTCCACCAGGACCCCGCGAGCCGGGTGTGGG
AGCAGAGTTAAACTCTCCGACTTCCAGTGCCTTGCCATCACTGCCCGATT
TCCAGCTGGAGCTTGAGAAGTGCGACTATCCCTCCATAGCGGGCAGCCAG
ATGTCTTTGGGCGCAAAAACTCCCCAAGCAGCTGCCGAAACTGAAGATGA
GGAAGATGCCTGCGACTACGATGAAACGGGAGCCGGGGAGCTCAGAGGTG
TAGTGGATGAACGCGATTTGGAGGCGCTGCGACAGAAGGTCAAGATCCTG
GCGGTGCGTCCCATCGAGGGCGGAGATGGACAGCAGCAGAACGATGTGTG
GGAGCATGAACTGAAGGCCACGGTGGACAAGCTGGATCACTTGATGATGC
TGAAAGAAACAGCCAAAAGGCAGCAAACGAACCGCTTGAAGTCCACCGAA
CAGCGACCCGATTCATTGGGCGCCGAGGCCTTGAAACGCCACTGCGATGT
GGTCGAGGTGAAGGTCACCTCTTGCGCCACCACAGCCAGCTTGCCAGTCA
CACCCCATCACCAGCTGAATCACCTTGCACCGCCCACGCCCATTAAGAAG
CTGCAACAGCAACTGGCGCCCTTGCCCTCCGTAAACGTTTCCATGCGGGA
GTTGCCCCTGTTGGCCAGGTTGTCCAACGAGCTCCTGGATCGCAGCAGTG
CTGCTTTCGGCGGAGTGCGCAAGACGCTGCGTAGGCGCTCTCTGGAAGCA
AGCTTTCTAGACCAT
BO21750.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcs-RB | 1434 | CG7761-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcs-RB | 2216 | CG7761-RB | 520..1950 | 17..1447 | 7155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14989922..14991070 | 299..1447 | 5745 | 100 | Plus |
| 2R | 25286936 | 2R | 14989680..14989859 | 120..299 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 14989548..14989616 | 54..122 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 14981782..14981823 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:40:13 has no hits.
BO21750.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:17 Download gff for
BO21750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RA | 488..1915 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:42 Download gff for
BO21750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 506..1936 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:01 Download gff for
BO21750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 520..1950 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:24 Download gff for
BO21750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcs-RB | 520..1950 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:24 Download gff for
BO21750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14989685..14989859 | 125..299 | 100 | -> | Plus |
| 2R | 14981782..14981823 | 17..58 | 100 | -> | Plus |
| 2R | 14989553..14989619 | 59..124 | 97 | -> | Plus |
| 2R | 14989923..14991070 | 300..1449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:01 Download gff for
BO21750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10869287..10869328 | 17..58 | 100 | -> | Plus |
| arm_2R | 10877058..10877124 | 59..124 | 97 | -> | Plus |
| arm_2R | 10877190..10877364 | 125..299 | 100 | -> | Plus |
| arm_2R | 10877428..10878575 | 300..1449 | 99 | | Plus |
BO21750.pep Sequence
Translation from 16 to 1465
> BO21750.pep
MSSAEDGELDPQIQIELENLNSATDEINKLEIELEEANSTFRILLNESTR
RLKVSSKKLGNCIEKARPYYEALDKAREAQIECQKAAVKFQRANEIHAAA
KETVALAEQRFMSNSHEWQFDNAWQEMLNHATQKVMDAETQKADCHAEHQ
RLTKLFNAAEQKLQQLEDRFRRSINKSRPYFEEKQVCQDQLQTQKNRIQE
LQQQVAGAKSTYSTALRNLERISEDIHRQRGDFPTPPGPREPGVGAELNS
PTSSALPSLPDFQLELEKCDYPSIAGSQMSLGAKTPQAAAETEDEEDACD
YDETGAGELRGVVDERDLEALRQKVKILAVRPIEGGDGQQQNDVWEHELK
ATVDKLDHLMMLKETAKRQQTNRLKSTEQRPDSLGAEALKRHCDVVEVKV
TSCATTASLPVTPHHQLNHLAPPTPIKKLQQQLAPLPSVNVSMRELPLLA
RLSNELLDRSSAAFGGVRKTLRRRSLEASFLDH
BO21750.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcs-PB | 477 | CG7761-PB | 1..477 | 1..477 | 2437 | 100 | Plus |
| CG14408-PA | 659 | CG14408-PA | 1..227 | 1..230 | 465 | 43.5 | Plus |
| CG14408-PG | 630 | CG14408-PG | 1..252 | 1..230 | 429 | 39.2 | Plus |
| CG14408-PE | 684 | CG14408-PE | 1..252 | 1..230 | 429 | 39.2 | Plus |
| CG14408-PH | 684 | CG14408-PH | 1..252 | 1..230 | 429 | 39.2 | Plus |
