BO21757.complete Sequence
1585 bp assembled on 2010-01-08
GenBank Submission: KX797825
> BO21757.complete
GAAGTTATCAGTCGACATGGGTAACTGCCTCACCACACAGAAGGGCGAAC
CCGACAAGCCCGCAGATCGAATCAAGCTGGACGACCCGCCCACCATCGGA
GTCGGAGTGGGCGTGCCACAAATCCCCATGCCCTCACACGCCGGACAGCC
ACCGGAGCAGATACGTCCGGTTCCCCAGATCCCGGAGAGCGAAACGGCAG
GTGCCAACGCCAAGATTTTTGTCGCCCTCTACGACTACGACGCCCGCACC
GACGAGGATTTGAGCTTCCGCAAGGGAGAGCACTTGGAGATACTGAATGA
CACGCAGGGTGACTGGTGGCTGGCGCGGAGCAAGAAGACACGTTCGGAAG
GCTACATTCCATCCAATTATGTGGCCAAGTTGAAATCAATCGAAGCAGAA
CCCTGGTACTTCCGCAAAATCAAACGCATTGAGGCTGAGAAAAAACTTCT
ACTGCCAGAGAACGAGCACGGTGCATTTTTAATTCGCGATTCCGAAAGCC
GTCACAACGACTACTCGCTATCAGTGCGCGATGGCGATACGGTTAAGCAT
TATCGCATCAGACAATTGGACGAAGGCGGCTTCTTCATCGCCAGGCGCAC
GACATTCAGAACCCTTCAGGAGCTGGTGGAACACTATTCGAAGGACTCTG
ATGGCCTATGCGTCAACCTCTGCAAGCCGTGTGTCCAGATCGAGAAGCCT
GTAACTGAGGGGCTTTCGCACCGCACTCGCGATCAGTGGGAGATCGACAG
AACGTCTTTGAAATTCGTGCGCAAACTGGGCTCCGGACAGTTTGGCGATG
TCTGGGAGGGATTGTGGAACAACACAACACCTGTGGCAATTAAAACTCTG
AAATCTGGTACAATGGACCCCAAGGATTTCTTAGCGGAAGCCCAGATCAT
GAAGAAACTGCGCCACACCAAGCTTATACAGTTGTACGCTGTCTGCACTG
TTGAGGAGCCTATCTATATTATCACAGAGTTAATGAAGCACGGTTCACTG
TTGGAATATCTCCAAGCCATTGCAGGCAAGGGTCGTAGCCTTAAAATGCA
AACTCTGATTGATATGGCAGCGCAAATAGCTGCTGGCATGGCTTACTTGG
AGTCCCAGAATTATATTCATAGGGATTTAGCGGCGCGCAATGTACTGGTA
GGCGATGGAAACATCGTCAAAATCGCCGACTTTGGTTTAGCTAGGCTCAT
CAAGGAGGACGAATACGAGGCGCGGGTAGGCGCCAGATTTCCCATAAAAT
GGACCGCTCCAGAGGCTGCTAACTACAGCAAATTCTCAATAAAATCGGAT
GTTTGGAGCTTTGGCATTCTTCTCACAGAACTGGTCACCTACGGACGCAT
ACCATATCCAGGCATGACCAACGCTGAGGTGCTAACGCAAGTGGAGCACG
GCTATCGAATGCCGCAACCTCCCAACTGCGAGCCGCGCCTGTATGAGATT
ATGCTGGAATGTTGGCACAAGGACCCCATGCGCAGACCCACGTTTGAGAC
GCTACAATGGAAACTGGAAGACTTCTATACATCTGATCAGAGCGACTACA
AAGAGGCGCAGGCCTACGCAAGCTTTCTAGACCAT
BO21757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src42A-RA | 1554 | CG44128-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
| Src42A-RB | 4794 | CG44128-PB | 3626..4791 | 402..1567 | 5830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src42A-RA | 3017 | CG44128-RA | 575..2125 | 17..1567 | 7755 | 100 | Plus |
| Src42A-RB | 6398 | CG44128-RB | 4046..5211 | 402..1567 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5982418..5982709 | 17..308 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 6011401..6011608 | 1360..1567 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 6010920..6011110 | 1005..1195 | 910 | 98.4 | Plus |
| 2R | 25286936 | 2R | 6010376..6010550 | 686..860 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 6011169..6011338 | 1193..1362 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 6010609..6010768 | 857..1016 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 6009063..6009184 | 403..524 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 5986570..5986666 | 306..402 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 6009268..6009355 | 522..609 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6009420..6009501 | 607..688 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:26:11 has no hits.
BO21757.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:50 Download gff for
BO21757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 572..2122 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:20 Download gff for
BO21757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 575..2125 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:17 Download gff for
BO21757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src42A-RA | 575..2125 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:17 Download gff for
BO21757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5982418..5982708 | 17..307 | 100 | -> | Plus |
| 2R | 5986572..5986666 | 308..402 | 100 | -> | Plus |
| 2R | 6009063..6009184 | 403..524 | 100 | -> | Plus |
| 2R | 6009271..6009355 | 525..609 | 100 | -> | Plus |
| 2R | 6009423..6009501 | 610..688 | 100 | -> | Plus |
| 2R | 6010379..6010547 | 689..857 | 100 | -> | Plus |
| 2R | 6010610..6010768 | 858..1016 | 100 | -> | Plus |
| 2R | 6010932..6011109 | 1017..1194 | 100 | -> | Plus |
| 2R | 6011171..6011337 | 1195..1361 | 100 | -> | Plus |
| 2R | 6011403..6011608 | 1362..1569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:20 Download gff for
BO21757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1896776..1896860 | 525..609 | 100 | -> | Plus |
| arm_2R | 1896928..1897006 | 610..688 | 100 | -> | Plus |
| arm_2R | 1897884..1898052 | 689..857 | 100 | -> | Plus |
| arm_2R | 1898115..1898273 | 858..1016 | 100 | -> | Plus |
| arm_2R | 1898437..1898614 | 1017..1194 | 100 | -> | Plus |
| arm_2R | 1898676..1898842 | 1195..1361 | 100 | -> | Plus |
| arm_2R | 1898908..1899113 | 1362..1569 | 99 | | Plus |
| arm_2R | 1896568..1896689 | 403..524 | 100 | -> | Plus |
| arm_2R | 1869923..1870213 | 17..307 | 100 | -> | Plus |
| arm_2R | 1874077..1874171 | 308..402 | 100 | -> | Plus |
BO21757.pep Sequence
Translation from 16 to 1585
> BO21757.pep
MGNCLTTQKGEPDKPADRIKLDDPPTIGVGVGVPQIPMPSHAGQPPEQIR
PVPQIPESETAGANAKIFVALYDYDARTDEDLSFRKGEHLEILNDTQGDW
WLARSKKTRSEGYIPSNYVAKLKSIEAEPWYFRKIKRIEAEKKLLLPENE
HGAFLIRDSESRHNDYSLSVRDGDTVKHYRIRQLDEGGFFIARRTTFRTL
QELVEHYSKDSDGLCVNLCKPCVQIEKPVTEGLSHRTRDQWEIDRTSLKF
VRKLGSGQFGDVWEGLWNNTTPVAIKTLKSGTMDPKDFLAEAQIMKKLRH
TKLIQLYAVCTVEEPIYIITELMKHGSLLEYLQAIAGKGRSLKMQTLIDM
AAQIAAGMAYLESQNYIHRDLAARNVLVGDGNIVKIADFGLARLIKEDEY
EARVGARFPIKWTAPEAANYSKFSIKSDVWSFGILLTELVTYGRIPYPGM
TNAEVLTQVEHGYRMPQPPNCEPRLYEIMLECWHKDPMRRPTFETLQWKL
EDFYTSDQSDYKEAQAYASFLDH
BO21757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src42A-PA | 517 | CG44128-PA | 1..517 | 1..517 | 2742 | 100 | Plus |
| Src42A-PB | 1597 | CG44128-PB | 1205..1597 | 125..517 | 2054 | 98.7 | Plus |
| Src64B-PD | 552 | CG7524-PD | 98..551 | 66..515 | 1227 | 51.9 | Plus |
| Src64B-PC | 552 | CG7524-PC | 98..551 | 66..515 | 1227 | 51.9 | Plus |
| Src64B-PI | 552 | CG7524-PI | 98..551 | 66..515 | 1227 | 51.9 | Plus |
