BO21762.complete Sequence
1699 bp assembled on 2010-01-08
GenBank Submission: KX798293
> BO21762.complete
GAAGTTATCAGTCGACATGTCGGAGATTGTCGACACCGAGCTGCTGGTCA
ACTGCACCATCCTCGCCGTCCGTCGATTCGAGCTGAATAGCATTGTGAAC
ACCACGCTCCTGGGCAGTCTCAACAGAACCGAGGTGGTCAGCCTCTTGTC
GAGCATTATCGACAATCGGGATAATCTCGAGAGCATCAATGAGGCCAAAG
ACTTTCTGACCGAGTGCCTGTTTCCATCGCCGACAAGACCGTACGAGTTG
CCATGGGAGCAGAAAACGATTTGGGCTATAATTTTCGGTCTGATGATGTT
TGTGGCCATTGCTGGCAATGGTATTGTTCTCTGGATCGTTACAGGACATC
GCAGCATGAGGACGGTCACAAATTACTTCCTGCTGAACTTGAGCATCGCC
GACCTGCTGATGTCGTCGCTGAACTGCGTCTTCAACTTTATATTCATGCT
GAACTCAGATTGGCCATTCGGTTCGATTTATTGCACAATCAACAATTTCG
TGGCCAACGTCACGGTCTCTACGTCGGTCTTCACGCTCGTGGCCATAAGT
TTCGATAGATACATCGCCATTGTGCATCCGCTGAAACGCCGCACGTCGCG
TCGGAAGGTGCGCATCATCCTGGTCCTGATCTGGGCACTCAGCTGTGTGC
TGTCGGCGCCATGTCTGCTCTACTCCAGCATCATGACCAAGCACTATTAC
AATGGAAAATCGAGGACAGTCTGCTTCATGATGTGGCCAGATGGACGATA
TCCCACTTCTATGGCGGATTATGCATACAACCTGATCATCCTGGTACTGA
CCTACGGCATTCCCATGATTGTGATGCTCATATGCTACTCTCTCATGGGT
CGTGTCCTGTGGGGCAGTAGATCAATCGGCGAGAACACGGATCGCCAGAT
GGAGTCGATGAAGTCGAAGCGGAAGGTGGTGCGCATGTTTATTGCCATCG
TGTCCATCTTTGCCATTTGCTGGCTGCCGTATCACCTGTTCTTCATCTAC
GCCTACCACAACAACCAGGTGGCATCCACGAAGTACGTGCAACATATGTA
TCTCGGTTTCTACTGGCTGGCCATGTCCAATGCTATGGTCAATCCGCTCA
TTTACTACTGGATGAATAAGAGGTTCCGGATGTACTTCCAGCGGATCATC
TGCTGCTGTTGCGTGGGCCTCACCCGCCATCGATTCGACTCGCCGAAGAG
CCGGTTGACGAACAAGAACAGCTCGAACCGGCACACAAGAGGTGGGTACA
CCGTCGCCCACTCGCTCCCCAACTCCTCCCCCCCGACCACCCAAACTCTT
TTGGCCGTCCTGGCCCAGACTCTGACTCAGCCTAAGCCTCAGACCCAGTT
GCTCTTGTCCCACCACTCACCACATCCCACGCAACCTTCCGCAGCGGAGA
CCAAGAGTCAGTGGAAGCGCAGCACGATGGAGACGCAGATCCAGCAGGCG
CCGGTCACCAGCTCTTGCCGGGAGCAGCGGAGTGCACAGCAGCAGCAGCC
ACCCGGAAGTGGAACCAATCGGGCAGCCGTCGAGTGTATTATGGAACGGC
CGGCGGATGGATCCAGTTCGCCGCTGTGCCTTTCGATCAACAACAGCATC
GGTGAGCGGCAGCGCGTGAAAATCAAATACATCTCCTGTGACGAGGACAA
TAATCCCGTGGAGCTCAGTCCCAAGCAGATGGCAAGCTTTCTAGACCAT
BO21762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR86C-RB | 1668 | CG6515-PB | 1..1665 | 17..1681 | 8325 | 100 | Plus |
| TkR86C-RA | 1515 | CG6515-PA | 1..1225 | 17..1241 | 6125 | 100 | Plus |
| TkR86C-RA | 1515 | CG6515-PA | 1224..1512 | 1393..1681 | 1445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR86C-RB | 3223 | CG6515-RB | 950..2614 | 17..1681 | 8325 | 100 | Plus |
| TkR86C-RA | 2659 | CG6515-RA | 539..1763 | 17..1241 | 6125 | 100 | Plus |
| TkR86C-RA | 2659 | CG6515-RA | 1762..2050 | 1393..1681 | 1445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10738201..10738761 | 1681..1121 | 2805 | 100 | Minus |
| 3R | 32079331 | 3R | 10738937..10739286 | 1124..775 | 1750 | 100 | Minus |
| 3R | 32079331 | 3R | 10741416..10741632 | 558..342 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 10750098..10750279 | 198..17 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 10741830..10741976 | 345..199 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 10741189..10741326 | 693..556 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 10739428..10739508 | 774..694 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:26:21 has no hits.
BO21762.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:51 Download gff for
BO21762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr86C-RB | 950..2614 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:24 Download gff for
BO21762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr86C-RB | 950..2614 | 17..1683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:20 Download gff for
BO21762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TkR86C-RB | 950..2614 | 17..1683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:20 Download gff for
BO21762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10741189..10741323 | 559..693 | 100 | <- | Minus |
| 3R | 10741416..10741629 | 345..558 | 100 | <- | Minus |
| 3R | 10741831..10741976 | 199..344 | 100 | <- | Minus |
| 3R | 10738939..10739286 | 775..1122 | 100 | <- | Minus |
| 3R | 10739428..10739508 | 694..774 | 100 | <- | Minus |
| 3R | 10738198..10738759 | 1123..1683 | 99 | <- | Minus |
| 3R | 10750098..10750279 | 17..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:24 Download gff for
BO21762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6566911..6567045 | 559..693 | 100 | <- | Minus |
| arm_3R | 6564661..6565008 | 775..1122 | 100 | <- | Minus |
| arm_3R | 6565150..6565230 | 694..774 | 100 | <- | Minus |
| arm_3R | 6567138..6567351 | 345..558 | 100 | <- | Minus |
| arm_3R | 6567553..6567698 | 199..344 | 100 | <- | Minus |
| arm_3R | 6575820..6576001 | 17..198 | 100 | | Minus |
| arm_3R | 6563920..6564481 | 1123..1683 | 99 | <- | Minus |
BO21762.pep Sequence
Translation from 16 to 1699
> BO21762.pep
MSEIVDTELLVNCTILAVRRFELNSIVNTTLLGSLNRTEVVSLLSSIIDN
RDNLESINEAKDFLTECLFPSPTRPYELPWEQKTIWAIIFGLMMFVAIAG
NGIVLWIVTGHRSMRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWP
FGSIYCTINNFVANVTVSTSVFTLVAISFDRYIAIVHPLKRRTSRRKVRI
ILVLIWALSCVLSAPCLLYSSIMTKHYYNGKSRTVCFMMWPDGRYPTSMA
DYAYNLIILVLTYGIPMIVMLICYSLMGRVLWGSRSIGENTDRQMESMKS
KRKVVRMFIAIVSIFAICWLPYHLFFIYAYHNNQVASTKYVQHMYLGFYW
LAMSNAMVNPLIYYWMNKRFRMYFQRIICCCCVGLTRHRFDSPKSRLTNK
NSSNRHTRGGYTVAHSLPNSSPPTTQTLLAVLAQTLTQPKPQTQLLLSHH
SPHPTQPSAAETKSQWKRSTMETQIQQAPVTSSCREQRSAQQQQPPGSGT
NRAAVECIMERPADGSSSPLCLSINNSIGERQRVKIKYISCDEDNNPVEL
SPKQMASFLDH
BO21762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR86C-PB | 555 | CG6515-PB | 1..555 | 1..555 | 2918 | 100 | Plus |
| TkR86C-PA | 504 | CG6515-PA | 1..504 | 1..555 | 2588 | 90.8 | Plus |
| TkR99D-PB | 517 | CG7887-PB | 94..399 | 76..381 | 807 | 47.4 | Plus |
| TkR99D-PA | 519 | CG7887-PA | 94..399 | 76..381 | 807 | 47.4 | Plus |
| TkR99D-PC | 564 | CG7887-PC | 94..399 | 76..381 | 807 | 47.4 | Plus |
