BO21763.complete Sequence
1705 bp assembled on 2010-01-08
GenBank Submission: KX793756
> BO21763.complete
GAAGTTATCAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGC
AAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACT
GTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACAC
TCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAG
AGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAAT
GGCTCCTCCACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCA
GGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGG
ATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAA
TACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGA
CAGCCTGCTGAAAGAACTGGACAATGCTCACATCTATGCTGTTCCTAACG
GATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTT
CGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCAC
TGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATG
CTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAG
GAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGG
AACAAACGGCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAG
TGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAG
CAGGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAG
TCGCGAGGATCAGTTGGATTCTATGCTAGGCAATCTACAGGCCAATATGA
GTCGCCAAGGAGTCAATACCGTGCAGAAGGGCTGCTGCAATGCCTGCGAG
AAGCCCATTGTGGGCCAGGTGATCACAGCCCTGGGCAAGACATGGCATCC
GGAGCACTTCACGTGCAACCACTGCAGCCAGGAGTTGGGCACCCGCAATT
TCTTCGAGCGCGACGGCTTCCCGTACTGCGAGCCGGACTACCACAATCTG
TTCAGCCCGCGCTGCGCCTACTGCAACGGCGCCATTCTGGACAAGTGCGT
AACGGCGCTGGACAAGACCTGGCACACGGAGCACTTCTTCTGCGCCCAAT
GCGGCCAGCAGTTCGGCGAGGAGGGATTCCATGAGCGTGACGGCAAGCCG
TACTGTCGCAACGACTACTTCGAGATGTTTGCCCCGAAGTGCAATGGCTG
CAACCGCGCCATTATGGAGAACTACATCTCGGCGCTGAACTCGCAGTGGC
ATCCGGATTGCTTCGTCTGCAGGGACTGCCGACAGCCCTTCCAAGGAGGA
TCCTTCTTTGATCACGAGGGACTGCCGTACTGCGAGACGCACTACCATGC
CAAGCGAGGATCCCTGTGCGCCGGGTGCTCCAAACCCATCACCGGACGCT
GCATCACGGCCATGTTCAAGAAATTCCACCCGGAACACTTCGTCTGCGCC
TTCTGCCTGAAGCAGTTGAATAAGGGCACTTTCAAGGAGCAAAAGGACAA
GCCATACTGCCACACCTGCTTCGACAAGATATTCGGAGCAAGCTTTCTAG
ACCAT
BO21763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RC | 1674 | CG31794-PC | 1..1671 | 17..1687 | 8310 | 99.8 | Plus |
Pax-RK | 1746 | CG31794-PK | 83..1743 | 27..1687 | 8260 | 99.8 | Plus |
Pax-RJ | 1746 | CG31794-PJ | 83..1743 | 27..1687 | 8260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RC | 2377 | CG31794-RC | 374..2049 | 12..1687 | 8320 | 99.8 | Plus |
Pax-RK | 2255 | CG31794-RK | 239..1899 | 27..1687 | 8260 | 99.8 | Plus |
Pax-RJ | 2253 | CG31794-RJ | 265..1925 | 27..1687 | 8260 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19403998..19404688 | 1424..734 | 3425 | 99.7 | Minus |
2L | 23513712 | 2L | 19401109..19401373 | 1687..1423 | 1310 | 99.6 | Minus |
2L | 23513712 | 2L | 19410480..19410648 | 193..25 | 830 | 99.4 | Minus |
2L | 23513712 | 2L | 19410248..19410414 | 359..193 | 820 | 99.4 | Minus |
2L | 23513712 | 2L | 19409402..19409552 | 741..591 | 755 | 100 | Minus |
2L | 23513712 | 2L | 19409769..19409910 | 501..360 | 710 | 100 | Minus |
2L | 23513712 | 2L | 19409612..19409704 | 593..501 | 465 | 100 | Minus |
2L | 23513712 | 2L | 21199830..21199885 | 1075..1020 | 190 | 89.3 | Minus |
2L | 23513712 | 2L | 21202145..21202200 | 1075..1020 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-28 02:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6814 | 22..136 | 124 | 62.2 | Plus |
BO21763.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:52 Download gff for
BO21763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 207..1877 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:29 Download gff for
BO21763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 379..2049 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:23 Download gff for
BO21763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 379..2049 | 17..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:23 Download gff for
BO21763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19401106..19401372 | 1424..1689 | 98 | <- | Minus |
2L | 19403999..19404682 | 740..1423 | 99 | <- | Minus |
2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
2L | 19409769..19409910 | 360..501 | 100 | <- | Minus |
2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:29 Download gff for
BO21763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19401106..19401372 | 1424..1689 | 98 | <- | Minus |
arm_2L | 19403999..19404682 | 740..1423 | 99 | <- | Minus |
arm_2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
arm_2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
arm_2L | 19409769..19409910 | 360..501 | 100 | <- | Minus |
arm_2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
arm_2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
BO21763.pep Sequence
Translation from 16 to 1705
> BO21763.pep
MDDLDALLADLQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDNTPGYGS
LRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGAS
TGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLKE
LDNAHIYAVPNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVGTVEEQI
VQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIG
NGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQL
DSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTC
NHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDK
TWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM
ENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSL
CAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHT
CFDKIFGASFLDH
BO21763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-PC | 557 | CG31794-PC | 1..557 | 1..557 | 3074 | 100 | Plus |
Pax-PH | 563 | CG31794-PH | 8..563 | 2..557 | 3064 | 99.8 | Plus |
Pax-PK | 581 | CG31794-PK | 28..581 | 4..557 | 3057 | 100 | Plus |
Pax-PJ | 581 | CG31794-PJ | 28..581 | 4..557 | 3057 | 100 | Plus |
Pax-PA | 581 | CG31794-PA | 28..581 | 4..557 | 3057 | 100 | Plus |