BO21770.complete Sequence
1822 bp assembled on 2010-01-08
GenBank Submission: KX794121
> BO21770.complete
GAAGTTATCAGTCGACATGGTCGACGAAAAGCTACCACCAAGCAAGGAAC
CGGCTGAACGGCCTCCAGACCAGACCACCCCCGGAAACGCGGCTACCCGA
TTCGGCTTGGAGGATCACGAGGCCACTCAGCAGGATGCCCGGGTGAACAC
ACTGCGCCAAGCAGAAGAGCGACGTGGTTCAATGGTGCCTCCCGACAAGC
GGGCGATGTCCATGAAGATGTCGCAAGCGCGCTTACACACCATAAATGAT
CCGAATCGAACTGGCACACATTCTGCTGAAGCGACGACACCACCGGCCAA
GCCTGCGGTCAACATTTCGTCGCGGAGTTCTTTGGTAAGAGGTGTGGCGC
CAGATCTTCCACCCAAGCCGCAGCGCCCCTCCGATAGCGAGGCCGATCTT
GAATCGTCCGATGTGGATAGACCATCGGCAAAAAGGAAATCGGAGAAAGC
TCTAGCTGATGTGTCAACTTCGTCATCGGAGGAATCAGAGAAACGCGTCC
CACCTGCTGCTGCATCGGCGCCTCCTCCAGCACAAGCTGAGCCTCAGTGG
AAATCAATTGATTTTGCAGCATCGGAAGCTGAGCCCATTGCCCCGCCGGC
GCCTAGGCCGGAGGATGTACCATTGCCCCCACCCATGATGTCGTCTTTGC
CGACGGATGGAAGCCCCGACGATGTGCAGAGCATAAACAGCAAGTTGACC
AATACCGACATCACTTTTCACCCATCCAAGGTATTCGCCTCGAAGGCAAC
TAACACTTCGGGCATGCTCTACTCCGACGAGGAAAATGAGCCGGAGGAAG
AGGAATTTCCAAAGCTTCCGGATCAGTTTTCCGCCAGCGATCTGGACACT
TTGTTCCTGCTGGCTTGTCGGGAGGTGAAGAAGGCTGGTGCTATCGCTCT
TGCGGAAAACAAAAAGAACCAGGAGTACACCACCAAGAAGCACACGAATG
ATATCGTCACTCCCACCGACAACATTGTCGAGGAGTCTTTCATTAAGGCC
ATCAGCTCACGGTATCCCAATCACCAATTTATTGCCGAAGAGAGAATTTC
AAAGTCGGAGACTGGTATGGTGACCCTGACCGATGACCCCACCTGGATAA
TCGATCCCATTGATGGCACCATGAACTTTGTCCACCACTTTCCGTACTAC
TGCATCTCCGTGGCCTATTTGGTAAATCAGGAGACCCAGTTTGGTATTAT
CTATAATCCGCCCATGAAGAATATGTACACGGCCCAACTGGGCAAGGGTG
CTCAAATGAACGGCGAGATGATAAGGACCACTGGCCAAACCAACCTCTCC
GCGGCCATGGTTCTACAGGAGTACAGCTCGGGCAGCAATGAGGCGCGTAA
CCAAGTGGCCACTGAAAATTCCCAGCGACTGGTAAAGAAAACCCATGCGA
TGCGCTCTATTGGATCCTCCGCCATGTGCTTGGCAATGGTCGCCTCCGGA
GTGGCGGATGCCTTCTACAACTTTGGGCTGCACGTTTGGGATATGGCAGC
AGGCGCTTTGATAGTCACGGAGGCCGGAGGAGTGGTAATGGATCCGGCCG
GAGAGGAGTTGGACATTATGTCCCGCCGCTGCCTCGCTGCCTCTACTGAC
TACCTTGCCCTCGAATTGGGTAACTGCCTGCAGCAGAATTATCCATCTCC
ACGTGACGACGAGCCGCGTTCCGTTAACCCCAATGAGTACGGGCCTGCTC
CGGAGACCAGGGACTTTACCAGCCAAACGGACTTCCCCGATTCGGATACC
CCAGAAACCACTGACACCGAAATAGGCGGCGAAAAATCAGCGACGCCAGC
TAACGCAAGCTTTCTAGACCAT
BO21770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-RA | 1791 | CG9389-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
| CG9391-RC | 837 | CG9391-PC | 250..337 | 1076..1163 | 260 | 86.4 | Plus |
| CG9391-RA | 837 | CG9391-PA | 250..337 | 1076..1163 | 260 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-RA | 2043 | CG9389-RA | 155..1942 | 17..1804 | 8940 | 100 | Plus |
| CG9391-RC | 1171 | CG9391-RC | 423..510 | 1076..1163 | 260 | 86.4 | Plus |
| CG9391-RA | 1104 | CG9391-RA | 356..443 | 1076..1163 | 260 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21269417..21270426 | 1026..17 | 5050 | 100 | Minus |
| 3L | 28110227 | 3L | 21268493..21268898 | 1804..1399 | 2030 | 100 | Minus |
| 3L | 28110227 | 3L | 21268966..21269338 | 1399..1027 | 1865 | 100 | Minus |
| 3L | 28110227 | 3L | 21267402..21267489 | 1163..1076 | 260 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:26:41 has no hits.
BO21770.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:54 Download gff for
BO21770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1942 | 17..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:33 Download gff for
BO21770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1942 | 17..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:27 Download gff for
BO21770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1942 | 17..1806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:27 Download gff for
BO21770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21268491..21268898 | 1399..1806 | 99 | <- | Minus |
| 3L | 21268967..21269338 | 1027..1398 | 100 | <- | Minus |
| 3L | 21269417..21270426 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:33 Download gff for
BO21770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21261591..21261998 | 1399..1806 | 99 | <- | Minus |
| arm_3L | 21262067..21262438 | 1027..1398 | 100 | <- | Minus |
| arm_3L | 21262517..21263526 | 17..1026 | 100 | | Minus |
BO21770.pep Sequence
Translation from 16 to 1822
> BO21770.pep
MVDEKLPPSKEPAERPPDQTTPGNAATRFGLEDHEATQQDARVNTLRQAE
ERRGSMVPPDKRAMSMKMSQARLHTINDPNRTGTHSAEATTPPAKPAVNI
SSRSSLVRGVAPDLPPKPQRPSDSEADLESSDVDRPSAKRKSEKALADVS
TSSSEESEKRVPPAAASAPPPAQAEPQWKSIDFAASEAEPIAPPAPRPED
VPLPPPMMSSLPTDGSPDDVQSINSKLTNTDITFHPSKVFASKATNTSGM
LYSDEENEPEEEEFPKLPDQFSASDLDTLFLLACREVKKAGAIALAENKK
NQEYTTKKHTNDIVTPTDNIVEESFIKAISSRYPNHQFIAEERISKSETG
MVTLTDDPTWIIDPIDGTMNFVHHFPYYCISVAYLVNQETQFGIIYNPPM
KNMYTAQLGKGAQMNGEMIRTTGQTNLSAAMVLQEYSSGSNEARNQVATE
NSQRLVKKTHAMRSIGSSAMCLAMVASGVADAFYNFGLHVWDMAAGALIV
TEAGGVVMDPAGEELDIMSRRCLAASTDYLALELGNCLQQNYPSPRDDEP
RSVNPNEYGPAPETRDFTSQTDFPDSDTPETTDTEIGGEKSATPANASFL
DH
BO21770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-PA | 596 | CG9389-PA | 1..596 | 1..596 | 3094 | 100 | Plus |
| CG9391-PC | 278 | CG9391-PC | 6..278 | 275..548 | 667 | 47.8 | Plus |
| CG9391-PA | 278 | CG9391-PA | 6..278 | 275..548 | 667 | 47.8 | Plus |
| CG17029-PB | 284 | CG17029-PB | 6..274 | 272..540 | 435 | 35.9 | Plus |
| CG17029-PA | 284 | CG17029-PA | 6..274 | 272..540 | 435 | 35.9 | Plus |
