Clone BO21777 Report

Search the DGRC for BO21777

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:217
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptlqfR-RC
Protein status:BO21777.pep: Imported from assembly
Sequenced Size:1981

Clone Sequence Records

BO21777.complete Sequence

1981 bp assembled on 2010-01-08

GenBank Submission: KX795142

> BO21777.complete
GAAGTTATCAGTCGACATGGTGGATAAATTCATCAGCATGTGGAAAGTGC
GCGAATTGGCGGACAAGGTCACCAATGTCGTGATGAATTACACGGAAACG
GAGGGCAAGGTGCGGGAGGCCACCAACGATGATCCTTGGGGGCCTACAGG
ACCCCTCATGCAGGAATTGGCCTATTCCACCTTCTCATACGAAACATTCC
CGGAGGTGATGTCCATGCTGTGGAAGCGCATGCTGCAGGACAATAAAACC
AACTGGCGACGCACGTACAAGAGCCTCCTTCTGCTAAACTATTTGGTGCG
AAACGGCTCTGAACGGGTGGTAACCTCCTCTCGGGAGCACATCTACGATC
TGCGCTCGCTGGAGAACTATACATTCACCGACGAGGGCGGCAAGGATCAG
GGTATTAATGTTAGGCATAAGGTACGAGAGCTTATAGACTTTATTCAGGA
TGATGATCGTTTGCGCGAGGAGCGCAAAAAGGCGAAGAAGAACAAGGACA
AGTACATCGGCATGAGCAGCGACGCCATGGGCATGCGAAGCGGTGGCTAC
AGCGGCTATAGCGGTGGATCTGGAGGAGGCGGCGGTGGCAGCGGTGGCTA
CAATGATGGCGACTATCGCTCTAGTCGTGGAGACAATTGGTACTCCGACA
AAAGCGCCGACAAGGATCGGTATGAGGATGATGATACTCACTACGATGGA
GAGCGAGAGGGATCCGATAGCGACTCACCCAGTCCAAGACGTAACTATCG
ATACAATGACCGTGCGAGTCCTGCCGAAGTAGCCAGCGAGGCCAAACCTT
CCAGCCTCAACATGAACATTCGTTCGAAGACCGTCAGTTCCCCTGTCTCC
AAGCAGCCCACTTCAACGGCTTCTGCCAAGCCAGCGCTGTCCCAGAAGAA
GATCGATCTGGGTGCGGCAGCAAACTTTGGAAAGCCAGCTCCTGGCGGTG
CTGCTGGCATTCACTCACCAACTCACCGTGACACTCCCACCAGCGTGGAC
TTGATGGGCGGCGCTTCGCCATCGCCGTCTACTTCCAAGGCAAACAATAA
TACGCAAAGCAATAACAACGATCTGCTGGACGATCTGTTCAAGACCTGCT
CGCCACCGCCGGGGCAGGAGAAGACGCTGAACAGTGCTGCCGTGATTGTG
GATGACGATGATGACTTCAATCCGCGTGCCAGCGATGCTAGCCAGCAGGA
ATTCGGCGACTTCGCCTCTGCTTTCGGGCAGCCCTCGGCGGGATCGACGA
TCAGCGAGCCACCATCAACGGGCCTGGTTCCGGCTGCGAACGATGAGTTC
GCCGACTTTGCGGCGTTCCAAGGCTCGACAACGTCGACATCTGCGCTGGA
CGGTAATTTGCTGAAGACTGCCACGCCGGCGAACGATTCGTTTGACCTGT
TTAATTCAGCTCCCACCTCGACGGCAGCAGCCACAACGGCTACAGATCTC
CTGGCAGGCCTGGGCGATCTGTCCATTCACCAAAGCATGCCCATGGACAA
TATGATGCCTCCCATTCCCGCCGTCACGGGCAATAATCTGCTCCAGCCCA
TGTCGGTGACCAATAATAACAATAATACCAACGGAGGCGCAGTCCCCGCC
GCTGCCAGTGTCCAGTCTACCGCTGTGGGCGCCACCTGGTCGGGCGACCT
GAAGGGCGGCAAGATGAACATTGACCTGGACAATCTGCTGATGAGCAAGT
CGGGCAAGCCCAGTGCCCCGGCCCCTTCGATGAATGCCCTGAAGACCAAC
AGTCCGGCAAAGGCGCCACTGAATGTGCAGACGGGTGGCGGATTCCCTGG
ACTGTCGCCAATGACCAGTCCGAACATTTTTGGGGCTCCGGCACCGCAGC
AAAGCATTCCACAAAACCAATCAGCATTTGCCAACTTTGGAGCTTTCCAG
CAGCAGCAGCAGAATCACAGCAATAATAACAATAATAGCTCGTCGGCATT
CGACTTGTTTCAAGCAAGCTTTCTAGACCAT

BO21777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
lqfR-RC 1950 CG42250-PC 1..1947 17..1963 9735 100 Plus
lqfR-RD 4248 CG42250-PD 1..1480 17..1496 7400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
lqfR-RC 2707 CG42250-RC 285..2231 17..1963 9735 100 Plus
lqfR-RD 5024 CG31285-RA 285..1764 17..1496 7400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22413518..22414277 737..1496 3800 100 Plus
3R 32079331 3R 22418108..22418575 1496..1963 2340 100 Plus
3R 32079331 3R 22412908..22413279 270..641 1860 100 Plus
3R 32079331 3R 22412649..22412850 70..271 1010 100 Plus
3R 32079331 3R 22413361..22413457 642..738 485 100 Plus
3R 32079331 3R 22411585..22411637 17..69 265 100 Plus
Blast to na_te.dros performed 2014-11-28 02:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 660..717 635..575 118 68.9 Minus

BO21777.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:57:59 Download gff for BO21777.complete
Subject Subject Range Query Range Percent Splice Strand
epsin-like-RC 253..2199 17..1965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:51 Download gff for BO21777.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 285..2231 17..1965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:39 Download gff for BO21777.complete
Subject Subject Range Query Range Percent Splice Strand
lqfR-RC 285..2231 17..1965 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:39 Download gff for BO21777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22413520..22414277 739..1496 100 -> Plus
3R 22411585..22411637 17..69 100 -> Plus
3R 22412649..22412850 70..271 100 -> Plus
3R 22412910..22413279 272..641 100 -> Plus
3R 22413361..22413457 642..738 100 -> Plus
3R 22418109..22418575 1497..1965 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:51 Download gff for BO21777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18238371..18238572 70..271 100 -> Plus
arm_3R 18237307..18237359 17..69 100 -> Plus
arm_3R 18238632..18239001 272..641 100 -> Plus
arm_3R 18239083..18239179 642..738 100 -> Plus
arm_3R 18239242..18239999 739..1496 100 -> Plus
arm_3R 18243831..18244297 1497..1965 99   Plus

BO21777.pep Sequence

Translation from 16 to 1981

> BO21777.pep
MVDKFISMWKVRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQE
LAYSTFSYETFPEVMSMLWKRMLQDNKTNWRRTYKSLLLLNYLVRNGSER
VVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHKVRELIDFIQDDDRLR
EERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDY
RSSRGDNWYSDKSADKDRYEDDDTHYDGEREGSDSDSPSPRRNYRYNDRA
SPAEVASEAKPSSLNMNIRSKTVSSPVSKQPTSTASAKPALSQKKIDLGA
AANFGKPAPGGAAGIHSPTHRDTPTSVDLMGGASPSPSTSKANNNTQSNN
NDLLDDLFKTCSPPPGQEKTLNSAAVIVDDDDDFNPRASDASQQEFGDFA
SAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQGSTTSTSALDGNLLK
TATPANDSFDLFNSAPTSTAAATTATDLLAGLGDLSIHQSMPMDNMMPPI
PAVTGNNLLQPMSVTNNNNNTNGGAVPAAASVQSTAVGATWSGDLKGGKM
NIDLDNLLMSKSGKPSAPAPSMNALKTNSPAKAPLNVQTGGGFPGLSPMT
SPNIFGAPAPQQSIPQNQSAFANFGAFQQQQQNHSNNNNNSSSAFDLFQA
SFLDH

BO21777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
lqfR-PC 649 CG42250-PC 1..649 1..649 3393 100 Plus
lqfR-PD 1415 CG42250-PD 1..493 1..493 2578 100 Plus
lqf-PF 640 CG8532-PF 5..625 11..635 405 25.2 Plus
lqf-PL 630 CG8532-PL 5..610 11..622 401 25.1 Plus
lqf-PG 630 CG8532-PG 5..610 11..622 401 25.1 Plus