BO21781.complete Sequence
2095 bp assembled on 2010-01-06
GenBank Submission: KX794737
> BO21781.complete
GAAGTTATCAGTCGACATGACGCAGACCAAGCAGCCAGCAGGGCGGTCGT
CCACCTCGGCCGGGGATTTTGTAGCCCCCATTAGCTCTACGAGTGCCTCC
AAGTTCACGCCCTGCTCCGCCTCCGACCACAATGTCCTGCTGAACAACTT
CCAGCTTAAGAAGAAGAGCTACAGGGTCCTGCTTCACGGACAGCAGTTGG
TTTGGGAGCGTCTGCAGAAGATCAAGCAATCGCCCCAAGGAAACGAGGCC
AAGGCACCGTTGCCGCCGGACTCGCCAGCTCAACCAGGCGGAATCTGCTC
TTATGGACCACAAAGCCACGTGCTCCACCTGGACGATGTGGTTAGCATAA
GGAGCGGGGACACCAAGGCGAGCTCCCTCAAACCGCCTTCGCCGCCAGGC
TCGGAACGCAGTTCCGGATGCAGTGGCGATGTTGCTCAAGGGAAGCCTAC
CAGTCAATACCTGACCATCAACTATGCCATGAGGCTGAGCAAGTCCCAAA
CGGATTGCAATCGGTGGGAGCTAAGGAGACTCACCTTCTTCAACTCGGAT
CCCTACATAGTGAGGCAGTGGGACCAGGAGCTGCAAATCCGTCTGCATAG
CTCCTCCCCCACCCGGATGCGAGTGCGCCGCCTTTTGGTCTTTATAAACC
CCTATGGAGGTCGCAAGGCGGGAGCTCAGACCTATGAGCGCCATGTGAGA
CCTATTTTCCAGCTTGCCGGCGTAGACGCCACGTGTATCACCACTCAGAG
GGCAAACCAAGTGAAGGACATACTTCTGAGCCATGATCTGGGAGTATACG
ATGCGGTTTGCTGTGTCGGAGGCGATGGCACCGTAGCAGAGGTCATCAAC
GGACTGATATTCCGTCAAATGCGAGAGTTGGGACTGGACGAACAGCGGCC
ACCATACATTCCAAGACCGGCTCTGCCAGTGGGTGTGATTCCCGCTGGCA
GCACCGACACCATTGCGTATAGTATGCACGGCACGGCGGATGTGAGGACA
GCGGCTATCCATGTGATTCTGGGCCAGCATCGGGGATTGGATGTGTGCAG
TGTGAGCAATGGGCAGTCCCTGCTCAGATTCTGTGCCAGTGTCCTGAGCT
ACGGGTACCTGGGCGATGTGGCAGCCCAGAGCGAGAACTACCGCTGGATG
GGACCGCGCCGGTACGAGTACAGTGGCGTCAAGGCCTTCCTGAATAATCG
CGGCTATGACGCCGAACTGAGAATGTTAGAAGAGCCCGATCTTCTACTGA
CCACGCCGCTGGAGGACATTCCGCAGAGTCCGGATAGTGTGTGCTCGCTG
GGAGAGTCAGTGCCATCCGTCTGCTATGCCAATTGCCAGCGCTGCAGCTT
CGCCAGCAGCATACAGGAACAGCGATCCTCATTGTTCATCCAAGAGGAAT
CTAAAGAGGCAGAGCGCAATCAGCAGGTAGAAACAGAGGACTCTCATCTA
GCCGCCAGTGAAGCAGCACTCCTGAGGCCTCGTCCGCGTCCAGGCAATCT
TCGATTGCCCACTGGCTCCATTTCATCAATGAGGAACCTCGGCAACGATC
AGTGGAAGGTTGTGCGGGGCAATTTCTTTATGATCTGCGGCGCGAACATA
ACCTGCGCCTGCGCCAGGAGTCCCAATGGCATCTCCCGTTACAGTCATCT
GGGTGATGGTTGCCTGGACCTGATTCTCGTGAAAAAGACCTCACTGCTCA
ACAACGTGCGTTTTCTGCTCAACACGGCGGGCAGAAGTGGTGATATTCGC
AATTTGCCTTTTGTAGAGGTATATCGCACAAGGGAATTCCGGTTCAGAAC
TTTTTCTGCCAGCGAGGAGGACTACAGCTTGGCAGGGTCTTGTCAGCCGA
TTACACCGCCTGAAGAAATGACCGCCCACTCCTCCTCGACGGAGTTTTCC
AGCTGGAACTGTGATGGAGAGGTGGTGACCGACCTGGACATAACCATGCG
ATCGCATTGTCAGCTCATCGAGGTCTTCATGCGGGGTCCCCATTCCTACA
GCAAGCCCCTCAAGGGCGGCACCACGCCCACAACCCCAGCTAGCTCTAGC
GACAATGTTTACTGCTGCTGCAAGGACGCAAGCTTTCTAGACCAT
BO21781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cerk-RB | 2064 | CG16708-PB | 1..2061 | 17..2077 | 10305 | 100 | Plus |
| Cerk-RA | 2064 | CG16708-PA | 1..2061 | 17..2077 | 10305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cerk-RB | 2435 | CG16708-RB | 79..2147 | 9..2077 | 10315 | 99.9 | Plus |
| Cerk-RA | 2786 | CG16708-RA | 430..2498 | 9..2077 | 10315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5359979..5361717 | 1747..9 | 8665 | 99.9 | Minus |
| 3R | 32079331 | 3R | 5359348..5359550 | 1950..1748 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 5359161..5359288 | 2077..1950 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:09 has no hits.
BO21781.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:26:13 Download gff for
BO21781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16708-RB | 87..2147 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:52 Download gff for
BO21781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cerk-RA | 438..2498 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:00 Download gff for
BO21781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cerk-RA | 438..2498 | 17..2079 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:00 Download gff for
BO21781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5359159..5359287 | 1951..2079 | 98 | <- | Minus |
| 3R | 5359348..5359550 | 1748..1950 | 100 | <- | Minus |
| 3R | 5359979..5361709 | 17..1747 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:52 Download gff for
BO21781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1184881..1185009 | 1951..2079 | 98 | <- | Minus |
| arm_3R | 1185070..1185272 | 1748..1950 | 100 | <- | Minus |
| arm_3R | 1185701..1187431 | 17..1747 | 100 | | Minus |
BO21781.pep Sequence
Translation from 16 to 2095
> BO21781.pep
MTQTKQPAGRSSTSAGDFVAPISSTSASKFTPCSASDHNVLLNNFQLKKK
SYRVLLHGQQLVWERLQKIKQSPQGNEAKAPLPPDSPAQPGGICSYGPQS
HVLHLDDVVSIRSGDTKASSLKPPSPPGSERSSGCSGDVAQGKPTSQYLT
INYAMRLSKSQTDCNRWELRRLTFFNSDPYIVRQWDQELQIRLHSSSPTR
MRVRRLLVFINPYGGRKAGAQTYERHVRPIFQLAGVDATCITTQRANQVK
DILLSHDLGVYDAVCCVGGDGTVAEVINGLIFRQMRELGLDEQRPPYIPR
PALPVGVIPAGSTDTIAYSMHGTADVRTAAIHVILGQHRGLDVCSVSNGQ
SLLRFCASVLSYGYLGDVAAQSENYRWMGPRRYEYSGVKAFLNNRGYDAE
LRMLEEPDLLLTTPLEDIPQSPDSVCSLGESVPSVCYANCQRCSFASSIQ
EQRSSLFIQEESKEAERNQQVETEDSHLAASEAALLRPRPRPGNLRLPTG
SISSMRNLGNDQWKVVRGNFFMICGANITCACARSPNGISRYSHLGDGCL
DLILVKKTSLLNNVRFLLNTAGRSGDIRNLPFVEVYRTREFRFRTFSASE
EDYSLAGSCQPITPPEEMTAHSSSTEFSSWNCDGEVVTDLDITMRSHCQL
IEVFMRGPHSYSKPLKGGTTPTTPASSSDNVYCCCKDASFLDH
BO21781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cerk-PB | 687 | CG16708-PB | 1..687 | 1..687 | 3620 | 100 | Plus |
| Cerk-PA | 687 | CG16708-PA | 1..687 | 1..687 | 3620 | 100 | Plus |
| Sk2-PA | 661 | CG32484-PA | 12..628 | 24..596 | 218 | 23.8 | Plus |
