BO21789.complete Sequence
2314 bp assembled on 2010-01-08
GenBank Submission: KX794517
> BO21789.complete
GAAGTTATCAGTCGACATGCGAAGAAACCTGCGCTTAGACTGGAGGGCCC
TGGCGCTGCTGGGCGCCCTCCTCTCGTTCATCATCGCCTGGCGGGGCCTT
GTATCTGCGATGCCCCTCATGGCCATGGACAACAACTTGACAGACTCATC
CGGATCCACAAACACATCCACATCCTCCACATCAAAATACAACAGCACGA
ACAATAGTAATCTGTTTAGTAATAGTTATCTACAAAGTGATCATAGTCGT
AGTAGTTTAGTGCCGAGCGCAGTGAGTGAACGTAGTGTAAATCAACCCAC
AAATCAAAGTATTAATGCTGAATTTAATCAGAGCTTAAGCACGCATCCAA
CTGCCATAACAAGCACACCACAAACCCAAACTCAAACCCAAATCCAATCC
CAATACCCATCGCAGGCGGAGGATTCCGATCAGCTGGAGGAGCCGCTGGG
ATTCGTCATCTCAGCGATGCCGAACGAGCATCTGGCGGTCCTGTCGCGTA
CCGAACGCAGCATTCGTCACCAGAATCAGCAGCAGCAGAAGAAGCATCAC
CATCATCACCAACAACAGCAACAGCAACAGCATCAGCAGCAGCAACCAAT
GTCGCCCGCTGACAATAATTTCATTGGTTCGAAATCGAAAAGACTGAGCA
ACCCTAGAAGTAGTCTTAACATAAATAGCAGTAGCAGTAACACGCCCATC
AGCAATCTGGACCGTAACGAACGATCCACGGTGCCACAGTCCCATTTGGC
CTGGACCTCGCGCAAGATCCAGCTGTACATCAAAAATCGCATCCTTCAGA
TATTGCGGGATGGCGTTGTCAACGGAACCCAGGACGAGAATAGTGAATTC
ACAATTCTCCAGCGATCCACGGTGGATGTGGGACGCATCAAGTTGCAGAG
TGTGGCCACTTGCCTGTATCTCTGCATGGACGCGTGCGGTGTTCCCTACG
GCTCGAAAGACTTCACCGACGACTGCGTCTTCAACGAGAACATGGGTCTT
CAGAACTACAACACTTACTCCTCCACGTACCACTCTCAGGCGCGGCGGGT
CTTCTACCTGGCCCTGAATGGCAGTGGCCAGCCCCGGCGTACCCAGATCC
CGGCCAGCCGATCGCTGGGCAAGCTGAGCACCTACACGAACGCCATCACG
GAGACGGTGCCGCAGGAGCGGGTCGAGCAGCTGATCGCCAAGAATTTTGG
GGCCAATCGCGTCAAGCACGGCGTGCGGCAACTCTGTGATACGGGCAAGC
CGCTGATCGAGCTGATCGATGTGGCCAGATTCAAGGCGCCGCCACATTGC
AGCAGCAACACTAGTGGCAGCAGCAGCAGCATCAGCAGCAGCAGTAGTAG
CAGTAGCAAAAGTAGTAGCAATAGCAGTAGCAGTTACGTTCCTGTGTCTG
CGATCAGCAGCCTGAGTAGTATTAGTAACAGTAGTCAAAGCGAGAGCGGC
CATATTAGCAGTAGCCTTAGCGGTAGCAGTAACAGTAATAGTAGTAGCAA
TAGTAGTAGCAGTAACAGTAGCAGTAATAGTAGTAGACCAAGTGGTAGCA
AGGCCAACAAGAAGAAGAAGCCCAAGTGCAAGCCGCACGAGCAGGAGGAC
ACTCACAATTGCCAGAAGCGCGGTGGCGCCGGAGCGGGAGCATTGCGAAA
ACTTGGTCCCAAGGCGAAGAGGTGCAAGGAGCTGCGGGAGAAGGCGGCCG
CCGAGAAGCGAGCGCCGCCCAATTGTGGCAAGAAGAATGGGGCCAGGAAG
AATCCTACAGAGGCAGCCAAGGCGGTGCAACAGCGACCCAAGGGAAACAT
CCAGCACGGAGGCAAGAAGAAGCCGAACAAGGCTGGTAAACAGCGCCAAA
ATGGGGGCAAAAAGCAGCAGCAGCAGCAACAGCATCAGTTGCAACAACAG
CCGCTGCAACATCAGGCCAAATCCATTTCCGGTGGCAAGAGGAAGCATCG
GAAATTGGATGCAAGTACCACCACCACCATGGCCACCAGCCTGGGCACGC
CCCCAAGTAGCCACTGGGAGAGCAGCTCGCCGCTGCCCGCATTTTCCCTT
AGCGAAACCAGCGATAGGGTGGAGCGCAACGTGCGCATGAGCAGCGGCGA
GGAGCAGGATCAGGATAACGACCAGGATCAGGAGCAGTCCGATCCGGGGG
AGCAGGGCGAGGAGGAGACCGAGGGCGACGGTGGATCCCTAGAAGATGCG
AGCTACGAGGACTCAAGTTCCGAGGCCCAAGGACGCAGCGGAGCAGGCGG
CGACGATTCGCTCTACTACGATTTCGGACTGTTGTCCCCCCGGCGAGCAA
GCTTTCTAGACCAT
BO21789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnl-RD | 2283 | CG4608-PD | 1..2280 | 17..2296 | 11400 | 100 | Plus |
| bnl-RC | 2283 | CG4608-PC | 1..2280 | 17..2296 | 11400 | 100 | Plus |
| bnl-RA | 2313 | CG4608-PA | 1..2259 | 17..2275 | 11295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnl-RD | 4073 | CG4608-RD | 1111..3390 | 17..2296 | 11400 | 100 | Plus |
| bnl-RC | 4295 | CG4608-RC | 1111..3390 | 17..2296 | 11400 | 100 | Plus |
| bnl-RA | 3632 | CG4608-RA | 1111..3369 | 17..2275 | 11295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19796214..19797533 | 2274..955 | 6600 | 100 | Minus |
| 3R | 32079331 | 3R | 19827654..19828488 | 851..17 | 4175 | 100 | Minus |
| 3R | 32079331 | 3R | 19800398..19800501 | 955..852 | 520 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6944 | 1777..1996 | 211 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6875 | 1839..1990 | 175 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6890 | 1839..1990 | 172 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6884 | 1859..2026 | 167 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2417 | 1839..1915 | 161 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6913 | 1728..1915 | 152 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1011..1141 | 1789..1915 | 151 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1592 | 1860..1922 | 149 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6950 | 1755..1923 | 147 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2577..2665 | 1820..1914 | 146 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6588 | 1858..1922 | 140 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2586..2642 | 1859..1915 | 132 | 70.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 969..1012 | 1859..1905 | 120 | 76.6 | Plus |
BO21789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:58:07 Download gff for
BO21789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RC | 1111..3390 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:03 Download gff for
BO21789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RC | 1111..3390 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:51 Download gff for
BO21789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnl-RC | 1111..3390 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:51 Download gff for
BO21789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19795491..19795515 | 2275..2298 | 92 | <- | Minus |
| 3R | 19796214..19797532 | 956..2274 | 100 | <- | Minus |
| 3R | 19800398..19800501 | 852..955 | 100 | <- | Minus |
| 3R | 19827654..19828488 | 17..851 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:03 Download gff for
BO21789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15621213..15621237 | 2275..2298 | 92 | <- | Minus |
| arm_3R | 15621936..15623254 | 956..2274 | 100 | <- | Minus |
| arm_3R | 15626120..15626223 | 852..955 | 100 | <- | Minus |
| arm_3R | 15653376..15654210 | 17..851 | 100 | | Minus |
BO21789.pep Sequence
Translation from 16 to 2314
> BO21789.pep
MRRNLRLDWRALALLGALLSFIIAWRGLVSAMPLMAMDNNLTDSSGSTNT
STSSTSKYNSTNNSNLFSNSYLQSDHSRSSLVPSAVSERSVNQPTNQSIN
AEFNQSLSTHPTAITSTPQTQTQTQIQSQYPSQAEDSDQLEEPLGFVISA
MPNEHLAVLSRTERSIRHQNQQQQKKHHHHHQQQQQQQHQQQQPMSPADN
NFIGSKSKRLSNPRSSLNINSSSSNTPISNLDRNERSTVPQSHLAWTSRK
IQLYIKNRILQILRDGVVNGTQDENSEFTILQRSTVDVGRIKLQSVATCL
YLCMDACGVPYGSKDFTDDCVFNENMGLQNYNTYSSTYHSQARRVFYLAL
NGSGQPRRTQIPASRSLGKLSTYTNAITETVPQERVEQLIAKNFGANRVK
HGVRQLCDTGKPLIELIDVARFKAPPHCSSNTSGSSSSISSSSSSSSKSS
SNSSSSYVPVSAISSLSSISNSSQSESGHISSSLSGSSNSNSSSNSSSSN
SSSNSSRPSGSKANKKKKPKCKPHEQEDTHNCQKRGGAGAGALRKLGPKA
KRCKELREKAAAEKRAPPNCGKKNGARKNPTEAAKAVQQRPKGNIQHGGK
KKPNKAGKQRQNGGKKQQQQQQHQLQQQPLQHQAKSISGGKRKHRKLDAS
TTTTMATSLGTPPSSHWESSSPLPAFSLSETSDRVERNVRMSSGEEQDQD
NDQDQEQSDPGEQGEEETEGDGGSLEDASYEDSSSEAQGRSGAGGDDSLY
YDFGLLSPRRASFLDH
BO21789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnl-PD | 760 | CG4608-PD | 1..760 | 1..760 | 3896 | 100 | Plus |
| bnl-PC | 760 | CG4608-PC | 1..760 | 1..760 | 3896 | 100 | Plus |
| bnl-PA | 770 | CG4608-PA | 1..753 | 1..753 | 3861 | 100 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 387..689 | 429..748 | 224 | 27.1 | Plus |
| Mur89F-PB | 2159 | CG4090-PB | 387..689 | 429..748 | 224 | 27.1 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 646..976 | 429..748 | 183 | 23.7 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 926..1198 | 429..684 | 171 | 26.3 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 902..1196 | 429..748 | 170 | 23.8 | Plus |
