BO21796.complete Sequence
2452 bp assembled on 2010-01-25
GenBank Submission: KX795579
> BO21796.complete
GAAGTTATCAGTCGACATGTGTATAGCTCACCTGCCTATCACATTTACTC
TCGCCATCCTGCTCGCAATTGCTTCTAATGAAGGCGCGCAAGGCGTAGAA
AGTGCGACAAGGACGGCAATTGAAGCTATACGAACAGGAATCGGCACGAA
ACCGGAAACGGAAATTGCGGACGCCACAGAGGCGGAAGCCCCCGTGCGAG
AGGTAATATCGCTGCTGGGCATAATCGATGGTGCTGAGTCCGATATCCTG
GTTCCCGACGCCGACGACAAGTGTCCTGGCGGCTATTTCCACTGCAATAC
AACGGCACAGTGTGTTCCACAGCGGGCCAACTGTGACGGCAGTGTCGACT
GCGATGACGCATCGGATGAGGTGAACTGCGTGAACGAGGTGGACGCCAAG
TACTGGGATCACCTGTACAGAAAGCAGCCATTCGGGAGACACGATAATCT
CAGGATTGGCGAATGCCTTTGGCCCAACGAAAACTTTTCCTGTCCCTGTC
GAGGTGATGAAATTCTATGCAGATTTCAGCAGCTAACCGATATTCCAGAA
CGACTGCCGCAGCACGATCTGGCAACGCTCGATCTAACGGGAAACAATTT
CGAAACCATCCACGAAACTTTCTTCAGTGAACTGCCAGACGTCGATAGCT
TAGTGCTGAAGTTCTGCTCAATCCGTGAGATTGCCTCGCATGCATTCGAT
CGCCTGGCGGACAACCCACTGAGGACCCTTTATATGGACGATAATAAATT
ACCGCATCTGCCGGAACACTTCTTCCCCGAGGGCAATCAATTGAGTATTC
TCATTTTGGCACGCAACCACCTGCACCATTTGAAACGAAGCGATTTTCTC
AATCTACAGAAGTTACAGGAACTGGACCTTCGCGGCAATCGCATAGGAAA
CTTCGAAGCCGAGGTCTTTGCCCGACTACCGAATTTGGAGGTGCTCTATC
TCAATGAAAACCACTTAAAGCGTCTGGATCCAGATAGATTTCCCAGAACC
CTGCTCAATCTGCACACTTTGTCCTTGGCTTACAATCAGATCGAGGACAT
CGCCGCGAATACATTCCCCTTTCCACGCCTTCGATACTTATTTCTGGCTG
GCAATCGATTATCCCACATACGAGATGAAACATTTTGCAATCTCAGCAAT
CTACAAGGATTACACTTGAACGAGAACCGGATCGAAGGCTTCGACCTGGA
GGCCTTCGCTTGTTTGAAGAACCTAAGCTCTCTGCTCCTAACGGGCAATC
GCTTCCAGACCCTCGATTCGCGAGTTCTAAAAAACCTAACCAGCCTGGAT
TATATTTACTTCTCGTGGTTCCATTTGTGTAGCGCCGCCATGAATGTCCG
GGTCTGTGATCCACACGGCGATGGCATCAGCAGCAAGTTGCACCTGCTGG
ACAATCAGATATTGCGAGGCAGTGTCTGGGTGATGGCCTCGATTGCCGTG
GTTGGCAACCTATTGGTCCTGCTCGGTCGCTACTTCTACAAATCACGGAG
CAACGTGGAGCACTCGCTCTACCTTCGCCATTTGGCCGCCAGTGATTTCC
TCATGGGCATTTACCTCACATTGATTGCCTGTGCGGATATCAGTTTTCGC
GGCGAGTATATCAAATACGAGGAGACCTGGCGGCATAGCGGCGTTTGTGC
CTTCGCAGGCTTCCTCAGCACCTTCAGCTGCCAGTCGTCGACGCTGCTGC
TCACATTGGTCACCTGGGATCGTCTGATGTCGGTGACGAGGCCCCTCAAG
CCACGGGATACGGAAAAAGTTCGCATTGTCCTACGCCTTCTGCTGTTGTG
GGGCATAAGTTTCGGATTAGCTGCAGCTCCACTTCTTCCCAATCCGTACT
TTGGTAGCCATTTCTACGGCAACAATGGTGTCTGCTTATCGCTGCATATC
CACGATCCCTATGCGAAGGGTTGGGAGTACTCGGCGCTGCTGTTCATCCT
GGTCAATACGTTGTCACTGATCTTCATCCTCTTTTCCTACATTCGAATGT
TGCAAGCGATAAGGGATTCGGGTGGCGGAATGCGAAGCACTCACAGCGGT
CGCGAGAATGTGGTAGCAACTCGCTTTGCCATCATTGTGACCACCGATTG
CGCCTGCTGGCTGCCCATAATTGTGGTCAAATTGGCTGCTCTTTCAGGCT
GCGAAATCTCGCCCGATCTTTACGCCTGGCTGGCGGTTCTTGTGCTGCCA
GTGAACTCGGCCCTCAATCCAGTGCTCTACACATTGACCACTGCGGCCTT
TAAGCAACAGCTGCGTCGCTACTGTCACACCCTGCCCAGCTGCTCGCTGG
TGAACAACGAGACCCGATCCCAGACCCAGACTGCCTACGAGTCCGGACTG
AGTGTCAGTCTGGCGCACTTGGGCGGTGGTGTGGGCGGCGGGTCGGGGCG
AAAGCGGATGTCACACCGGCAGATGAGCTATCTGGCAAGCTTTCTAGACC
AT
BO21796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34411-RB | 2421 | CG34411-PB | 1..2418 | 17..2434 | 12090 | 100 | Plus |
| CG34411-RC | 2430 | CG34411-PC | 20..2427 | 27..2434 | 12040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34411-RB | 2975 | CG34411-RB | 351..2768 | 17..2434 | 12090 | 100 | Plus |
| CG34411-RC | 2870 | CG34411-RC | 256..2663 | 27..2434 | 12040 | 100 | Plus |
| CG12096-RC | 2985 | CG12096-RC | 2052..2345 | 2434..2141 | 1470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13172741..13173183 | 467..25 | 2215 | 100 | Minus |
| X | 23542271 | X | 13161921..13162214 | 2434..2141 | 1470 | 100 | Minus |
| X | 23542271 | X | 13163255..13163493 | 1659..1421 | 1195 | 100 | Minus |
| X | 23542271 | X | 13162415..13162571 | 2073..1917 | 785 | 100 | Minus |
| X | 23542271 | X | 13162627..13162773 | 1919..1773 | 735 | 100 | Minus |
| X | 23542271 | X | 13166050..13166193 | 1305..1162 | 720 | 100 | Minus |
| X | 23542271 | X | 13167361..13167504 | 1089..946 | 720 | 100 | Minus |
| X | 23542271 | X | 13163065..13163181 | 1773..1657 | 585 | 100 | Minus |
| X | 23542271 | X | 13165840..13165956 | 1422..1306 | 585 | 100 | Minus |
| X | 23542271 | X | 13172507..13172618 | 579..468 | 560 | 100 | Minus |
| X | 23542271 | X | 13170258..13170335 | 729..652 | 390 | 100 | Minus |
| X | 23542271 | X | 13162281..13162357 | 2149..2073 | 385 | 100 | Minus |
| X | 23542271 | X | 13167721..13167793 | 874..802 | 365 | 100 | Minus |
| X | 23542271 | X | 13172313..13172384 | 651..580 | 360 | 100 | Minus |
| X | 23542271 | X | 13167170..13167241 | 1161..1090 | 360 | 100 | Minus |
| X | 23542271 | X | 13167579..13167650 | 945..874 | 360 | 100 | Minus |
| X | 23542271 | X | 13170020..13170091 | 801..730 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:15:24 has no hits.
BO21796.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:54 Download gff for
BO21796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 351..2768 | 17..2436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:15 Download gff for
BO21796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 351..2768 | 17..2436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:14 Download gff for
BO21796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34411-RB | 351..2768 | 17..2436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:14 Download gff for
BO21796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13165840..13165956 | 1306..1422 | 100 | <- | Minus |
| X | 13166050..13166193 | 1162..1305 | 100 | <- | Minus |
| X | 13167170..13167241 | 1090..1161 | 100 | <- | Minus |
| X | 13167361..13167504 | 946..1089 | 100 | <- | Minus |
| X | 13167579..13167650 | 874..945 | 100 | <- | Minus |
| X | 13167722..13167793 | 802..873 | 100 | <- | Minus |
| X | 13170020..13170091 | 730..801 | 100 | <- | Minus |
| X | 13170258..13170335 | 652..729 | 100 | <- | Minus |
| X | 13172313..13172384 | 580..651 | 100 | <- | Minus |
| X | 13172507..13172618 | 468..579 | 100 | <- | Minus |
| X | 13163065..13163179 | 1659..1773 | 100 | <- | Minus |
| X | 13163256..13163491 | 1423..1658 | 100 | <- | Minus |
| X | 13161919..13162207 | 2148..2436 | 99 | <- | Minus |
| X | 13162283..13162356 | 2074..2147 | 100 | <- | Minus |
| X | 13162415..13162569 | 1919..2073 | 100 | <- | Minus |
| X | 13162628..13162772 | 1774..1918 | 100 | <- | Minus |
| X | 13172741..13173189 | 17..467 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:15 Download gff for
BO21796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13056316..13056389 | 2074..2147 | 100 | <- | Minus |
| arm_X | 13056448..13056602 | 1919..2073 | 100 | <- | Minus |
| arm_X | 13056661..13056805 | 1774..1918 | 100 | <- | Minus |
| arm_X | 13057098..13057212 | 1659..1773 | 100 | <- | Minus |
| arm_X | 13055952..13056240 | 2148..2436 | 99 | <- | Minus |
| arm_X | 13057289..13057524 | 1423..1658 | 100 | <- | Minus |
| arm_X | 13059873..13059989 | 1306..1422 | 100 | <- | Minus |
| arm_X | 13060083..13060226 | 1162..1305 | 100 | <- | Minus |
| arm_X | 13061203..13061274 | 1090..1161 | 100 | <- | Minus |
| arm_X | 13061394..13061537 | 946..1089 | 100 | <- | Minus |
| arm_X | 13061612..13061683 | 874..945 | 100 | <- | Minus |
| arm_X | 13061755..13061826 | 802..873 | 100 | <- | Minus |
| arm_X | 13064053..13064124 | 730..801 | 100 | <- | Minus |
| arm_X | 13064291..13064368 | 652..729 | 100 | <- | Minus |
| arm_X | 13066346..13066417 | 580..651 | 100 | <- | Minus |
| arm_X | 13066540..13066651 | 468..579 | 100 | <- | Minus |
| arm_X | 13066774..13067222 | 17..467 | 99 | | Minus |
BO21796.pep Sequence
Translation from 16 to 2452
> BO21796.pep
MCIAHLPITFTLAILLAIASNEGAQGVESATRTAIEAIRTGIGTKPETEI
ADATEAEAPVREVISLLGIIDGAESDILVPDADDKCPGGYFHCNTTAQCV
PQRANCDGSVDCDDASDEVNCVNEVDAKYWDHLYRKQPFGRHDNLRIGEC
LWPNENFSCPCRGDEILCRFQQLTDIPERLPQHDLATLDLTGNNFETIHE
TFFSELPDVDSLVLKFCSIREIASHAFDRLADNPLRTLYMDDNKLPHLPE
HFFPEGNQLSILILARNHLHHLKRSDFLNLQKLQELDLRGNRIGNFEAEV
FARLPNLEVLYLNENHLKRLDPDRFPRTLLNLHTLSLAYNQIEDIAANTF
PFPRLRYLFLAGNRLSHIRDETFCNLSNLQGLHLNENRIEGFDLEAFACL
KNLSSLLLTGNRFQTLDSRVLKNLTSLDYIYFSWFHLCSAAMNVRVCDPH
GDGISSKLHLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHS
LYLRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFL
STFSCQSSTLLLTLVTWDRLMSVTRPLKPRDTEKVRIVLRLLLLWGISFG
LAAAPLLPNPYFGSHFYGNNGVCLSLHIHDPYAKGWEYSALLFILVNTLS
LIFILFSYIRMLQAIRDSGGGMRSTHSGRENVVATRFAIIVTTDCACWLP
IIVVKLAALSGCEISPDLYAWLAVLVLPVNSALNPVLYTLTTAAFKQQLR
RYCHTLPSCSLVNNETRSQTQTAYESGLSVSLAHLGGGVGGGSGRKRMSH
RQMSYLASFLDH
BO21796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34411-PB | 806 | CG34411-PB | 1..806 | 1..806 | 4245 | 100 | Plus |
| CG34411-PC | 809 | CG34411-PC | 8..809 | 5..806 | 4223 | 100 | Plus |
| Lgr3-PA | 765 | CG31096-PA | 32..715 | 86..749 | 833 | 32.4 | Plus |
| Lgr1-PB | 831 | CG7665-PB | 472..777 | 447..759 | 329 | 30.3 | Plus |
| Lgr1-PA | 831 | CG7665-PA | 472..777 | 447..759 | 329 | 30.3 | Plus |
