Clone BO21809 Report

Search the DGRC for BO21809

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:218
Well:9
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO21809.pep: Imported from assembly
Sequenced Size:577

Clone Sequence Records

BO21809.complete Sequence

577 bp assembled on 2009-12-07

> BO21809.complete
GAAGTTATCAGTCGACATGTATGTTCATGCGATTTATGAACATATGTTTA
GCCATTTGGCCGCTTTTGGCCAACTGTGCTTCGTGTTGGCTCCTGGGGAA
AGTGCAACATTTGCGACTCCATTAACGGGTACACTCACTAACGCCCTTCG
GTTGCATCTCCCTCACAGGCGCAATGGAGCCTCCAGCACAGCCTCCGAGC
CGCTGCGTCCCAATCTGGATGGCAGCCACCATCTGCAGGAGTACACCTAC
AAGAAGATAACGGCCTGCGACGTCTGCTCCCAGATTCTGAGAGGGCACAC
ACGCCAGGGATTACGCTGCCGCATCTGCAAGCTGAACGCCCATGGAGATT
GCGCCCCCAATCTGCCGCGCTGCCAGCCAAAGCAGAAGCTGCTCCGGCGA
CAGAAGAGCACATCGGAGCTGGAGAATCGTGTTGATATCGAGGAAGAAAC
GTCAGCGAATCCGAAGTCCGAAACAACGCGACCCTTTGGCGAACCACTGA
TGCTCCTCAAGAGCACGGAATCCAATCCGGATGAGTCCAAGGGCAATCGA
CGAGTGCGCGCAAGCTTTCTAGACCAT

BO21809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG43729-RN 1677 CG43729-PN 1282..1674 167..559 1965 100 Plus
CG43729-RM 654 CG43729-PM 259..651 167..559 1965 100 Plus
CG43729-RC 468 CG43729-PC 73..465 167..559 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG43729-RN 4584 CG43729-RN 3753..4145 167..559 1965 100 Plus
CG43729-RM 2382 CG43729-RM 1551..1943 167..559 1965 100 Plus
CG43729-RC 1842 CG43729-RC 1011..1403 167..559 1965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15456283..15456560 17..294 1390 100 Plus
2R 25286936 2R 15456658..15456815 292..449 790 100 Plus
2R 25286936 2R 15463298..15463407 450..559 550 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:18:47 has no hits.

BO21809.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:21 Download gff for BO21809.complete
Subject Subject Range Query Range Percent Splice Strand
CG34365-RE 13..555 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:14 Download gff for BO21809.complete
Subject Subject Range Query Range Percent Splice Strand
CG43729-RB 5355..5747 167..561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:46 Download gff for BO21809.complete
Subject Subject Range Query Range Percent Splice Strand
CG43729-RC 1011..1403 167..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:46 Download gff for BO21809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15456283..15456559 17..293 100 -> Plus
2R 15456660..15456815 294..449 100 -> Plus
2R 15463298..15463407 450..561 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:14 Download gff for BO21809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11343788..11344064 17..293 100 -> Plus
arm_2R 11344165..11344320 294..449 100 -> Plus
arm_2R 11350803..11350912 450..561 98   Plus

BO21809.pep Sequence

Translation from 16 to 577

> BO21809.pep
MYVHAIYEHMFSHLAAFGQLCFVLAPGESATFATPLTGTLTNALRLHLPH
RRNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLR
CRICKLNAHGDCAPNLPRCQPKQKLLRRQKSTSELENRVDIEEETSANPK
SETTRPFGEPLMLLKSTESNPDESKGNRRVRASFLDH

BO21809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG43729-PC 155 CG43729-PC 25..155 51..181 696 100 Plus
CG43729-PM 217 CG43729-PM 87..217 51..181 696 100 Plus
CG43729-PN 558 CG43729-PN 428..558 51..181 696 100 Plus
CG43729-PA 818 CG43729-PA 688..818 51..181 696 100 Plus
CG43729-PT 877 CG43729-PT 688..877 51..181 573 65.3 Plus