Clone BO21821 Report

Search the DGRC for BO21821

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:218
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG17026-RA
Protein status:BO21821.pep: Imported from assembly
Sequenced Size:886

Clone Sequence Records

BO21821.complete Sequence

886 bp assembled on 2009-12-07

GenBank Submission: KX797312

> BO21821.complete
GAAGTTATCAGTCGACATGGCAGCCAGTAAGTCCCAGATCGAGGAGCTGT
ACGACTTTATCTATCCGCTCGCAGTGAGAGCTGGGGAAATCCTGTTGGAA
GGCTATCAAAATGCTGGCAAGGCGGTGGCCCTCAAGGACGGGGAGTTCTA
TAATGTAGTCACTGCCTATGATAACCAGATAGAGGAGTTTCTCGTGGAGA
AAATACTGGCGCGCTACCCGGATCACAAATTCATTGGGGAAGAGGATACC
CACAAGAATGACAATGTAACGAAAGAGCTGACGGATGCTCCAACTTGGAT
CATAGATCCCATCGATGGAACCTCGAACTTTATCAAACAAATTCCACATG
TCTCGGTTTCAATTGGATTGTCCATTAAGAAACAGATCGTGCTGGGTGTA
GTTAACAATCCCGCACAGAATAAGTTATATACCGCGAAATTGGGCCAGGG
TGCCTTTTGCAATGGGAAACCAATTCAGGTGAGCAGCTGTGAACATCTCA
ACGATGCTAATGTGGCATACGAGGTTTGCTTGCTGCACGCTCCAAAGATC
CGGAACAAGCACATCAAAAGAATCTACCATGTGGGATCCAATGCCAGAAG
ACTCCTGGCATATTCCGCTGTAGTGGATTCCCTTTGCATGGTGGCCGCAG
GCAACTTGGATGCCTTTCATATTGAAGACATGTATCCCTGGGATTGTGCA
GCTGGCTATTTGCTCATCCGTGAGGCCGGCGGAGTTGTCACGCATCCCTA
CGGCGGACCCTTCGATATCATGAAGCCAGATCTAATCTGCGCCGGAACGG
AGACACTGAGAGCTGAGATAGAGCATCTTATTCGGAAGGCTGATCAGGAG
AAGCATGTGGGAGGAGAGGCAAGCTTTCTAGACCAT

BO21821.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17026-RA 855 CG17026-PA 1..852 17..868 4260 100 Plus
CG17027-RB 867 CG17027-PB 142..787 158..803 1070 77.7 Plus
CG17027-RA 867 CG17027-PA 142..787 158..803 1070 77.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17026-RA 1004 CG17026-RA 91..942 17..868 4260 100 Plus
CG17027-RB 1558 CG17027-RB 412..1057 158..803 1070 77.7 Plus
CG17027-RA 1362 CG17027-RA 216..861 158..803 1070 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15975458..15976041 17..600 2920 100 Plus
3L 28110227 3L 15976097..15976366 599..868 1350 100 Plus
3L 28110227 3L 15980511..15980951 158..598 735 77.8 Plus
3L 28110227 3L 15981203..15981387 619..803 355 79.5 Plus
Blast to na_te.dros performed on 2014-11-27 07:09:44 has no hits.

BO21821.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:32 Download gff for BO21821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17026-RA 1..852 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:19 Download gff for BO21821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17026-RA 91..942 17..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:35 Download gff for BO21821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17026-RA 91..942 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:35 Download gff for BO21821.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15975458..15976041 17..600 100 -> Plus
3L 15976099..15976366 601..870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:19 Download gff for BO21821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15968558..15969141 17..600 100 -> Plus
arm_3L 15969199..15969466 601..870 99   Plus

BO21821.pep Sequence

Translation from 16 to 886

> BO21821.pep
MAASKSQIEELYDFIYPLAVRAGEILLEGYQNAGKAVALKDGEFYNVVTA
YDNQIEEFLVEKILARYPDHKFIGEEDTHKNDNVTKELTDAPTWIIDPID
GTSNFIKQIPHVSVSIGLSIKKQIVLGVVNNPAQNKLYTAKLGQGAFCNG
KPIQVSSCEHLNDANVAYEVCLLHAPKIRNKHIKRIYHVGSNARRLLAYS
AVVDSLCMVAAGNLDAFHIEDMYPWDCAAGYLLIREAGGVVTHPYGGPFD
IMKPDLICAGTETLRAEIEHLIRKADQEKHVGGEASFLDH

BO21821.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17026-PA 284 CG17026-PA 1..284 1..284 1492 100 Plus
CG17027-PB 288 CG17027-PB 5..284 4..284 1170 77.6 Plus
CG17027-PA 288 CG17027-PA 5..284 4..284 1170 77.6 Plus
CG17029-PB 284 CG17029-PB 4..277 2..277 675 45.3 Plus
CG17029-PA 284 CG17029-PA 4..277 2..277 675 45.3 Plus