BO21828.complete Sequence
1072 bp assembled on 2010-01-06
GenBank Submission: KX799763
> BO21828.complete
GAAGTTATCAGTCGACATGAACGGCAAGATGGACCGCCGCAAGAAACGCA
CCTCATCGGAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCC
ATTTTCGCCACCGGACGAGTGCCGCGCGACTATGACCTGAACTACTTGAC
CAAAAAGTGGAAGGAGCTCTCCGACCGGCTAAACAAGTGCAGCTCCGGAC
CCACACTGACGCCGGAGGAGTGGCGCAAGCGCCTAAACGATTGGAAGAAC
ACCACTCGCTGCAAGTACAGACGCAGCCTTCTGTCCACGGAAAAGGACAT
CTCGATGACCTCCGTGGAGACGCGCGCTCTCGATCTCTTTGGCAAGGTGC
CCACCACCGGCGGCGAAACGATGCTCAATCTGAAGTCCGAAAAGGATGAG
CACGACGACGAGATGGAGGAACTGGGCCAGCGTACTTCGGTGGCATTTCA
AAAGGAACTTCAGGCAGCCGTTGAAGAGGCAATCAACGATGAGGTGGACG
AGGAGGAGATGGTGGAGGAGCATGTCGATCACGAGGACATGATGGAGGAG
AATCTGGCGGAGACCGGCATCACCGCGTCCACAACGGCGGTCAATACGGG
TGGCGGCACCTATCGCACCATCGTCGTGGACAACACATCCTTCGAGCATG
TCGAGGAGGATCCCCAAACGGTGCAGCCGCACGCCGTCGAGTACGTCACA
TCCCGCAGGCCTGCTGCCCCCGTCATCAATCCGGGCACAGCCTCCTCCGG
CAATAAGCTGATCAACGGCGAGCTGCCCGTCAAGCGGATGCGCACACAGC
CCAGGGAGCAAATTATCTACGAAGTTAAAAATGCGCCGCGTTGCATTTCA
AACATGCAGGCCGTGCCGCCGCTGCACAGTACAAAGCTGGAGCGGGAACC
CAGTTCGCTGACAAGCGCGCTGAGCAGCAGCGATGCCCAGCAGATCGCGC
ACCAGCTGAAGCGACTGGCCGACATCAAATTCGAGACACTGCAATTTGAG
ATTGCGCGCTTCAAGTTCAACAACCCGGGCTTCCAGTACGATCCGCCGTC
CTTAGCAAGCTTTCTAGACCAT
BO21828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prod-RA | 1041 | CG18608-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
| CG15107-RB | 732 | CG15107-PB | 111..237 | 151..277 | 290 | 81.9 | Plus |
| CG15107-RA | 720 | CG15107-PA | 111..237 | 151..277 | 290 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prod-RA | 1597 | CG18608-RA | 126..1163 | 17..1054 | 5190 | 100 | Plus |
| CG15107-RB | 1118 | CG15107-RB | 215..341 | 151..277 | 290 | 81.9 | Plus |
| CG15107-RA | 1106 | CG15107-RA | 215..341 | 151..277 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18970130..18970730 | 828..228 | 2990 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18969838..18970069 | 1054..823 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 18970796..18971008 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:46 has no hits.
BO21828.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:26:05 Download gff for
BO21828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prod-RA | 144..1181 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:20 Download gff for
BO21828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prod-RA | 126..1163 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:29 Download gff for
BO21828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prod-RA | 126..1163 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:29 Download gff for
BO21828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18969836..18970067 | 825..1056 | 99 | <- | Minus |
| 2R | 18970796..18971008 | 17..229 | 100 | | Minus |
| 2R | 18970134..18970728 | 230..824 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:20 Download gff for
BO21828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14857341..14857572 | 825..1056 | 99 | <- | Minus |
| arm_2R | 14857639..14858233 | 230..824 | 100 | <- | Minus |
| arm_2R | 14858301..14858513 | 17..229 | 100 | | Minus |
BO21828.pep Sequence
Translation from 16 to 1072
> BO21828.pep
MNGKMDRRKKRTSSEQYQMYIDMMESDPIFATGRVPRDYDLNYLTKKWKE
LSDRLNKCSSGPTLTPEEWRKRLNDWKNTTRCKYRRSLLSTEKDISMTSV
ETRALDLFGKVPTTGGETMLNLKSEKDEHDDEMEELGQRTSVAFQKELQA
AVEEAINDEVDEEEMVEEHVDHEDMMEENLAETGITASTTAVNTGGGTYR
TIVVDNTSFEHVEEDPQTVQPHAVEYVTSRRPAAPVINPGTASSGNKLIN
GELPVKRMRTQPREQIIYEVKNAPRCISNMQAVPPLHSTKLEREPSSLTS
ALSSSDAQQIAHQLKRLADIKFETLQFEIARFKFNNPGFQYDPPSLASFL
DH
BO21828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prod-PA | 346 | CG18608-PA | 1..346 | 1..346 | 1795 | 100 | Plus |
| CG15107-PA | 239 | CG15107-PA | 1..237 | 5..343 | 414 | 33.6 | Plus |
| CG15107-PB | 243 | CG15107-PB | 1..241 | 5..343 | 414 | 33 | Plus |
