BO21842.complete Sequence
1372 bp assembled on 2010-01-08
GenBank Submission: KX793921
> BO21842.complete
GAAGTTATCAGTCGACATGGACACGGTAACCGAATCGGAGATGGCCATCG
CCATGGCGCTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCG
GAATACCAGGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTT
CATGCGCGACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGT
TGGAGGCGCGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAAC
GGCAAACTTGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGA
CTTCCGCGAGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCG
AACTGGTCACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATT
CTCGAGAAGAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGA
ACTGGTGGCCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACC
CGAATGCCTCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATC
GGAACGCGATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGG
CGTGGACGTTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGG
TGGAGATGATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATT
GGTGGCAATGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGG
CGTCGATGGACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCC
AGGAGGTGATGGCCTGCGGATGTCCTCAGGCCACTGCTGTCTACCAGGTG
TCCACGTACGCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAGGCAT
CCAGTCCATTGGACACATTGTGAAGGCTATTGCATTGGGAGCCAGCGCTG
TAATGATGGGCTCCCTGCTGGCGGGCACATCGGAGGCACCGGGCGAGTAC
TTCTTCTCCGACGGAGTGCGCCTTAAGAAGTACCGCGGCATGGGCTCCCT
GGAGGCCATGGAGCGCGGCGATGCCAAGGGCGCTGCCATGTCGCGCTACT
ACCACAACGAGATGGATAAAATGAAGGTGGCACAGGGCGTCAGTGGCAGC
ATCGTGGACAAGGGCAGTGTGCTGCGCTATCTACCCTATTTGGAGTGCGG
ACTGCAGCACAGTTGTCAGGACATCGGTGCTAACTCCATTAATAAATTGA
GGGATATGATCTATAATGGCCAACTGCGCTTCATGAAGCGCACCCATTCC
GCTCAACTGGAAGGCAATGTCCATGGCCTCTTCAGCTACGAGAAGCGTCT
CTTCGCAAGCTTTCTAGACCAT
BO21842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ras-RD | 1614 | CG1799-PD | 273..1611 | 16..1354 | 6695 | 100 | Plus |
| ras-RE | 1614 | CG1799-PE | 273..1611 | 16..1354 | 6695 | 100 | Plus |
| ras-RA | 1614 | CG1799-PA | 273..1611 | 16..1354 | 6695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ras-RD | 2810 | CG1799-RD | 575..1913 | 16..1354 | 6695 | 100 | Plus |
| ras-RE | 2415 | CG1799-RE | 471..1809 | 16..1354 | 6695 | 100 | Plus |
| ras-RA | 2519 | CG1799-RA | 575..1913 | 16..1354 | 6695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10746420..10747072 | 58..710 | 3265 | 100 | Plus |
| X | 23542271 | X | 10747485..10748027 | 710..1252 | 2715 | 100 | Plus |
| X | 23542271 | X | 10748096..10748200 | 1250..1354 | 525 | 100 | Plus |
| X | 23542271 | X | 10746184..10746226 | 16..58 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:12 has no hits.
BO21842.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:58:09 Download gff for
BO21842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RB | 553..1890 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:11 Download gff for
BO21842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RC | 378..1715 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:29:57 Download gff for
BO21842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ras-RA | 576..1913 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:29:57 Download gff for
BO21842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10746185..10746226 | 17..58 | 100 | -> | Plus |
| X | 10746421..10747072 | 59..710 | 100 | -> | Plus |
| X | 10747486..10748026 | 711..1251 | 100 | -> | Plus |
| X | 10748098..10748200 | 1252..1356 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:11 Download gff for
BO21842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10640218..10640259 | 17..58 | 100 | -> | Plus |
| arm_X | 10640454..10641105 | 59..710 | 100 | -> | Plus |
| arm_X | 10641519..10642059 | 711..1251 | 100 | -> | Plus |
| arm_X | 10642131..10642233 | 1252..1356 | 98 | | Plus |
BO21842.pep Sequence
Translation from 16 to 1372
> BO21842.pep
MDTVTESEMAIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPS
VMSPTNTVGDVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQ
PEVLLADIMTTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMI
ARTDLKKARSYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVII
LDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLR
VGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGH
IVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMER
GDAKGAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSC
QDIGANSINKLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLFASFL
DH
BO21842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ras-PD | 537 | CG1799-PD | 92..537 | 1..446 | 2273 | 100 | Plus |
| ras-PE | 537 | CG1799-PE | 92..537 | 1..446 | 2273 | 100 | Plus |
| ras-PA | 537 | CG1799-PA | 92..537 | 1..446 | 2273 | 100 | Plus |
| ras-PC | 537 | CG1799-PC | 92..537 | 1..446 | 2273 | 100 | Plus |
