BO21855.complete Sequence
1543 bp assembled on 2012-04-24
GenBank Submission: KX795538
> BO21855.complete
GAAGTTATCAGTCGACATGGCTTCATTCTTGGCACGAACTGGCGGCCCCC
TGATCGAAACCGTTAGGCCAGCGGCCATAAAAAAGATTCTTGGCCTGGCT
CCCATCGCCGTCCAGCAGCTGAGGAACCTCAATGTCCAGGAACACGTTTC
CTACAGTCTGCTCAATGAGGCCAAGATCCCAACACCTCGTTTCGCTGTTG
CCAAGAACGGCAAGGAGGCCAACGATATCGCCACCAAGCTGAAGACCGAT
AACCTGGTGCTGAAGGCTCAGGTTTTGGCCGGAGGACGAGGCAAAGGAAC
CTTTAAGAATGGCCTGAAGGGAGGTGTGCGAGTGGTCTACGATCCCCAGA
CCGCTGAAGAACTTTCAAGCAAAATGATCGATCAGCTTCTGGTCACCAAG
CAAACCGGAGCAGCCGGTCGCATCTGCAAAAAGGTGATGGTTGCCGAAAG
GAAGTTCCCCCGCCGTGAGTTCTACTTCGCCGTGATGATGGAGCGTGCCT
TTAACGGTCCCGTGCTGATCGCCTCCAAGGAGGGTGGTGTTGATATTGAG
GAGGTGGCTGCCAGCAGTCCAGATGCCATTTTGTACGAACCCATCGATAT
AGGCACTGGCTTGACCAGTGAACAGGCCGAAAAGATCGTCAAGAAGGTTG
GTCTGGGCGGCGATGGCGAGGACACACATGTCCAGATGCTGTTGAATCTG
TATGACCTGTTCGTCAAGAAGGATGCCCTCTTGGTTGAGATCAACCCCTA
TGCCGAGGATGCCATGTCCGGCTGCTTCTTCGCATTGGATGCTAAGCTGC
GATTTGATGACAACGCCGAGTTTCGTCAGAAGGAGCTGTTTGCGCTGCGC
GATTGGACCCAGGAGGATCCCAAGGAAGTCGAGGCTGCCAAATACAATCT
GAACTACATTGCCCTGGATGGCACTATCGGCTGCATGGTGAACGGCGCCG
GTCTGGCCATGGCCACCATGGATATCATTAAGTTGTATGGCGGTGAACCG
GCCAATTTCCTGGATGTCGGTGGTGGTGCCACTGCCGAGGCGGTCAAGGC
CGCCTTCAAGATCATCACTTCCGATCCGAAGGTGCTTTGCATTCTGGTCA
ACATCTTCGGTGGTATTATGCGTTGTGATGTCATTGCCGAGGGTATCATC
TCCGCCACCAAGGATCTGAATCTGAACATGCCCGTGGTTGTGCGTCTTCA
GGGAACCAAAGTCAAGGAGGCCCGCGAACTGATTCGTACATCTGGACTGA
AGATTCTGGCCCGCGATGATCTAGATAAGGCTGCCGATCTCGCCGTGCAC
TTGGCGCAAATCGTCAAACTGGCCCGCGAAATGAAGATGGACGTGAACTT
CGAGATTCCCGATGCCCAAAAGGGCAAGGGCGATTGCAAGAAAGATCAAA
AACAGCCCGACAGTAAAGGTGGCAAGAAGTCGGAGAAGAAAGATGACAAG
AAATCTGATTGCACAAAAAAAGAGGAAAAGAAAAAGGAAGAAAAGAAAGA
CATTTGCGAAAAGAAAGGTAAAAAGGCAAGCTTTCTAGACCAT
BO21855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skap-RD | 1512 | CG11963-PD | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| skap-RC | 1512 | CG11963-PC | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| skap-RB | 1509 | CG11963-PB | 1..1506 | 17..1525 | 7465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skap-RD | 1780 | CG11963-RD | 76..1584 | 17..1525 | 7545 | 100 | Plus |
| skap-RC | 1767 | CG11963-RC | 63..1571 | 17..1525 | 7545 | 100 | Plus |
| skap-RB | 1764 | CG11963-RB | 63..1568 | 17..1525 | 7465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8941408..8941833 | 777..1202 | 2130 | 100 | Plus |
| 3R | 32079331 | 3R | 8940922..8941190 | 506..774 | 1345 | 100 | Plus |
| 3R | 32079331 | 3R | 8941898..8942071 | 1199..1372 | 870 | 100 | Plus |
| 3R | 32079331 | 3R | 8940699..8940862 | 343..506 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 8940481..8940634 | 189..342 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 8942678..8942831 | 1372..1525 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 8939667..8939772 | 84..189 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 5562188..5562339 | 1026..875 | 355 | 82.2 | Minus |
| 3R | 32079331 | 3R | 8938820..8938888 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 05:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4904..4953 | 199..150 | 114 | 74.5 | Minus |
BO21855.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:06:19 Download gff for
BO21855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11963-RB | 74..1579 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:29 Download gff for
BO21855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skap-RD | 76..1584 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:11 Download gff for
BO21855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skap-RC | 63..1571 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:43 Download gff for
BO21855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skap-RC | 63..1571 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:43 Download gff for
BO21855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8940922..8941193 | 506..776 | 98 | -> | Plus |
| 3R | 8938820..8938888 | 17..85 | 100 | -> | Plus |
| 3R | 8939669..8939772 | 86..189 | 100 | -> | Plus |
| 3R | 8940482..8940634 | 190..342 | 100 | -> | Plus |
| 3R | 8940699..8940861 | 343..505 | 100 | -> | Plus |
| 3R | 8941408..8941832 | 777..1201 | 100 | -> | Plus |
| 3R | 8941901..8942070 | 1202..1371 | 100 | -> | Plus |
| 3R | 8942678..8942831 | 1372..1527 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:11 Download gff for
BO21855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4766421..4766583 | 343..505 | 100 | -> | Plus |
| arm_3R | 4764542..4764610 | 17..85 | 100 | -> | Plus |
| arm_3R | 4765391..4765494 | 86..189 | 100 | -> | Plus |
| arm_3R | 4766204..4766356 | 190..342 | 100 | -> | Plus |
| arm_3R | 4766644..4766915 | 506..776 | 98 | -> | Plus |
| arm_3R | 4767130..4767554 | 777..1201 | 100 | -> | Plus |
| arm_3R | 4767623..4767792 | 1202..1371 | 100 | -> | Plus |
| arm_3R | 4768400..4768553 | 1372..1527 | 98 | | Plus |
BO21855.pep Sequence
Translation from 16 to 1543
> BO21855.pep
MASFLARTGGPLIETVRPAAIKKILGLAPIAVQQLRNLNVQEHVSYSLLN
EAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGTFKNGL
KGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRR
EFYFAVMMERAFNGPVLIASKEGGVDIEEVAASSPDAILYEPIDIGTGLT
SEQAEKIVKKVGLGGDGEDTHVQMLLNLYDLFVKKDALLVEINPYAEDAM
SGCFFALDAKLRFDDNAEFRQKELFALRDWTQEDPKEVEAAKYNLNYIAL
DGTIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAEAVKAAFKII
TSDPKVLCILVNIFGGIMRCDVIAEGIISATKDLNLNMPVVVRLQGTKVK
EARELIRTSGLKILARDDLDKAADLAVHLAQIVKLAREMKMDVNFEIPDA
QKGKGDCKKDQKQPDSKGGKKSEKKDDKKSDCTKKEEKKKEEKKDICEKK
GKKASFLDH
BO21855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skap-PD | 503 | CG11963-PD | 1..503 | 1..503 | 2544 | 100 | Plus |
| skap-PC | 503 | CG11963-PC | 1..503 | 1..503 | 2544 | 100 | Plus |
| skap-PB | 502 | CG11963-PB | 1..502 | 1..503 | 2523 | 99.8 | Plus |
| skap-PA | 502 | CG11963-PA | 1..502 | 1..503 | 2523 | 99.8 | Plus |
| skap-PH | 451 | CG11963-PH | 1..451 | 1..452 | 2246 | 99.8 | Plus |
