BO21883.complete Sequence
2221 bp assembled on 2010-01-08
GenBank Submission: KX797651
> BO21883.complete
GAAGTTATCAGTCGACATGTCGATTGTCTGCACGCTGGAACAGAAAGTGA
ACTTTTTCAAAGCGGCTGCAACGACCAAAAATCTGTTGATACTCAAAAAC
AATACGGATACGAATTACATCAATAACTACAAGCAGGATAATCCCAGCAA
CAATAAATTTCCCCGCATCCAAGCTCAAAGCAACAACAGCCATCTGCAAC
ACCAGCAGCAACTGCAGCAGAAACTAGCGCAGCTGCATCACTACAGCCAG
CAGAAGCTGAGCGGCAGCGACTTTCCCTACGGGCCACGCCCCCCCACCGG
AGGCAAAGAGGAGAAGCTGCTCCTGCTAGCGCCGCCGGGCAAACTCTATC
CGGAGGCGTCTGTGTCCACAGCAATGCCCGAGGTCCTCAGCGGCACGCCC
ACCAACAGCCACAACAAAGCCAACATCGCCATGATGAACAACGTCCGGCT
ATCCAATATATCGCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTT
CTAACTTGCATCCGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCA
AATGACAGCGGCATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGG
CTATGGAGATGGAATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGAC
CGCAGTCGGCGTTGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAG
CAACGCGAATTCACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCG
CCGGAGAAGGAACAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCT
ACAATGACATGGTTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAAC
CATGTGCTGAAGGCCCAGCTGGACGCCATACGCGACAAGTTCAACATCTC
CGGCGAGAATCTGGTGAGCGTGGAGAAGATCCTCGCCTCGCTGCCCACCA
GCGAACAGGTGCTGAGTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGT
GGCTCCTCCTCGGGCTCCTCGCCCTCGGGCAGTGGATCGGGCGAGGGATC
GCCTCAAGGTGGCCACAATGGCTATCCGGTGGGTCCACCACTATCTCCAC
TGATCTACGGACCCAATGGCAATGCCCGGCCAGAGGCCACGGTTAAGAGT
GTCCACCACATACATCATGCGGGTGTTGCGCCGCCACCAACGCACCTACA
ACAGTTGGTTGTGCCCCAGTCCCAGACACAGCATCTCTACCAGCCACAGC
CGCAGCAGCATCAGCCGCATCAGCAGCAGCAGATTTCCCAGCCACCGCAG
CAACAACAGCAGCAGCAGGAGCCAAGTCCCAGTGCCGGCTCCAGTTCGCC
AGTCATCTCCGATCCGCACAACCGCCCGCCAAGCACCACCATTGCCAATC
TCCAGGTGCAACTGCAGCAGGCACTAAACCGCAATGTCAGGCCCGAGGAT
CTGGACAGCTTGCGCAAGGTGGTGGCCGCCGGCGCTCTATACAATGCGGC
AGCCGTGGTGGGAGCACCACCACCGCCACCATCTGCTGGTCTCTACGTGC
CCGCTCCCAGCGCCTATAAGGATCACCTGGAAGCGGCTGCAGCCTGGAGC
CACAATGTCGAGGCTGCTGTGAGCAGCAGTGCTGTGGATGCGGTCAGTAG
CTCATCGGTGTCCGGCAGTGCGGCCAGTGTGCTGAATCTATCGCGTCGGG
CCTGCTCACCCAGCTACGAGCACATGCTCTCCTCCACCACCTCCTCCACT
CTTTCCTCGGCCTCCTCATCGGGAGCTGTTTCCGGCGATGATGAGCAGGA
GCACGAACCAGCGCACATGGCTCCACTGCAGCTGCAGCGAAGCAGTCCGC
AGCAGGGCAGCGATGCCAACAACTGTCTGCCCCTCAAGCTGCGCCACAAG
TCCCATCTCGGCGACAAGGATGCGGCGGCCACGGCGCTACTCTCACTGCA
GCACATCAAGCAGGAGCCCAACTGCAGTCGGGCATCGCCGCCGGCTTGGA
ACGATGGCGGCGACAATTCCAGCGACGAAAGGGACTCCGGCATCTCCATC
GCCAGTGCGGAGTGGACGGCGCAGCTGCAGAGGAAGCTACTGGCGCCCAA
GGAGGCCAATGTGGTAACCAGTGCCGAGCGCGATCAAATGCTCAAGTCGC
AGCTGGAGCGCCTAGAGTCCGAGGTGGCCAGCATCAAGATGATCTTGGCG
GAGGCAAGCTTTCTAGACCAT
BO21883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 2190 | CG14029-PF | 1..2187 | 17..2203 | 10935 | 100 | Plus |
| vri-RD | 2190 | CG14029-PD | 1..2187 | 17..2203 | 10935 | 100 | Plus |
| vri-RA | 2190 | CG14029-PA | 1..2187 | 17..2203 | 10935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 4068 | CG14029-RF | 376..2562 | 17..2203 | 10935 | 100 | Plus |
| vri-RD | 3455 | CG14029-RD | 376..2562 | 17..2203 | 10935 | 100 | Plus |
| vri-RA | 3841 | CG14029-RA | 376..2562 | 17..2203 | 10935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5308021..5309717 | 507..2203 | 8485 | 100 | Plus |
| 2L | 23513712 | 2L | 5307565..5307912 | 159..506 | 1740 | 100 | Plus |
| 2L | 23513712 | 2L | 5306025..5306166 | 17..158 | 710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2543 | 94..241 | 150 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6946 | 199..431 | 128 | 54.9 | Plus |
BO21883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:58:12 Download gff for
BO21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 304..2490 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:23 Download gff for
BO21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 318..2504 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:05 Download gff for
BO21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 376..2562 | 17..2205 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:05 Download gff for
BO21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5306025..5306166 | 17..158 | 100 | -> | Plus |
| 2L | 5307565..5307912 | 159..506 | 100 | -> | Plus |
| 2L | 5308021..5309717 | 507..2205 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:23 Download gff for
BO21883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5306025..5306166 | 17..158 | 100 | -> | Plus |
| arm_2L | 5307565..5307912 | 159..506 | 100 | -> | Plus |
| arm_2L | 5308021..5309717 | 507..2205 | 99 | | Plus |
BO21883.pep Sequence
Translation from 16 to 2221
> BO21883.pep
MSIVCTLEQKVNFFKAAATTKNLLILKNNTDTNYINNYKQDNPSNNKFPR
IQAQSNNSHLQHQQQLQQKLAQLHHYSQQKLSGSDFPYGPRPPTGGKEEK
LLLLAPPGKLYPEASVSTAMPEVLSGTPTNSHNKANIAMMNNVRLSNISP
TLSMNGSSNEASNLHPLSMYGGSISPQSNDSGMSDSLGKYVPGSGYGDGM
MAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDNKKDESYWDRRRRNN
EAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKFNISGENLV
SVEKILASLPTSEQVLSNTKRAKMSGSGGSSSGSSPSGSGSGEGSPQGGH
NGYPVGPPLSPLIYGPNGNARPEATVKSVHHIHHAGVAPPPTHLQQLVVP
QSQTQHLYQPQPQQHQPHQQQQISQPPQQQQQQQEPSPSAGSSSPVISDP
HNRPPSTTIANLQVQLQQALNRNVRPEDLDSLRKVVAAGALYNAAAVVGA
PPPPPSAGLYVPAPSAYKDHLEAAAAWSHNVEAAVSSSAVDAVSSSSVSG
SAASVLNLSRRACSPSYEHMLSSTTSSTLSSASSSGAVSGDDEQEHEPAH
MAPLQLQRSSPQQGSDANNCLPLKLRHKSHLGDKDAAATALLSLQHIKQE
PNCSRASPPAWNDGGDNSSDERDSGISIASAEWTAQLQRKLLAPKEANVV
TSAERDQMLKSQLERLESEVASIKMILAEASFLDH
BO21883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-PF | 729 | CG14029-PF | 1..729 | 1..729 | 3750 | 100 | Plus |
| vri-PD | 729 | CG14029-PD | 1..729 | 1..729 | 3750 | 100 | Plus |
| vri-PA | 729 | CG14029-PA | 1..729 | 1..729 | 3750 | 100 | Plus |
| vri-PE | 610 | CG14029-PE | 1..610 | 120..729 | 3125 | 100 | Plus |
| vri-PC | 610 | CG14029-PC | 1..610 | 120..729 | 3125 | 100 | Plus |
