BO21904.complete Sequence
673 bp assembled on 2009-12-08
GenBank Submission: KX798441
> BO21904.complete
GAAGTTATCAGTCGACATGTCGGAAACATACGATTACCTGTTCAAGTTCC
TGATAATTGGCAGTGCTGGCAGCGGTAAGAGTTGTCTGTTGCATCACTTC
ATCGAGAGCAAGTTCAAAGACGACAGTTCGCACACCATCGGAGTGGAGTT
CGGCTCGCGGATTGTGAACGTGGGCGGCAAGTCGGTAAAGCTACAGATAT
GGGACACAGCCGGTCAGGAGAGATTCCGATCGGTGACAAGATCGTACTAT
CGCGGAGCAGCCGGAGCTCTCCTGGTCTACGATGCCACTTCGCGGGACTC
TTTCAATGCTTTGACAAACTGGCTGAATGATGCTCGCACTCTGGCCAGCC
CAAATATTGTGATCCTTTTGGTGGGCAATAAAAAGGACTTGGAGGAGGCG
CGTGATGTGACCTTTCTGGAAGCAAGCACCTTTGCCCAAGAGAACGAGCT
TATCTTCCTGGAGACGAGCGCCAAGACGGGGGAGAATGTTGAAGAGGCCT
TTCTCAAGTGCTCAAAGACCATACTGGCCAAAATTGAGACCGGAGAGCTG
GATCCCGAGCGCATCGGCAGCGGTATTCAGTACGGCGGAGCTGCTCTCCG
TAACTTACAGACACGACAGCGCAGCATCAATAAGCCGGATTGCACCTGTC
GCGTTGCAAGCTTTCTAGACCAT
BO21904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab4-RA | 642 | CG4921-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
| Rab4-RB | 642 | CG4921-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
| Rab14-RD | 648 | CG4212-PD | 124..276 | 131..283 | 240 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab4-RA | 1316 | CG4921-RA | 238..876 | 17..655 | 3195 | 100 | Plus |
| Rab4-RB | 973 | CG4921-RB | 139..777 | 17..655 | 3195 | 100 | Plus |
| Rab14-RD | 878 | CG4212-RD | 192..344 | 131..283 | 240 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17573935..17574267 | 114..446 | 1665 | 100 | Plus |
| 2R | 25286936 | 2R | 17574330..17574539 | 446..655 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 17573783..17573864 | 32..113 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 14357537..14357689 | 131..283 | 240 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:17:10 has no hits.
BO21904.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 15:05:59 Download gff for
BO21904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab4-RC | 529..1167 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:36 Download gff for
BO21904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab4-RB | 139..777 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:51 Download gff for
BO21904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab4-RB | 139..777 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:51 Download gff for
BO21904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17573699..17573714 | 17..32 | 100 | -> | Plus |
| 2R | 17573784..17573864 | 33..113 | 100 | -> | Plus |
| 2R | 17573935..17574267 | 114..446 | 100 | -> | Plus |
| 2R | 17574331..17574539 | 447..657 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:36 Download gff for
BO21904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13461204..13461219 | 17..32 | 100 | -> | Plus |
| arm_2R | 13461289..13461369 | 33..113 | 100 | -> | Plus |
| arm_2R | 13461440..13461772 | 114..446 | 100 | -> | Plus |
| arm_2R | 13461836..13462044 | 447..657 | 99 | | Plus |
BO21904.pep Sequence
Translation from 16 to 673
> BO21904.pep
MSETYDYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIV
NVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDATSRDSFNALT
NWLNDARTLASPNIVILLVGNKKDLEEARDVTFLEASTFAQENELIFLET
SAKTGENVEEAFLKCSKTILAKIETGELDPERIGSGIQYGGAALRNLQTR
QRSINKPDCTCRVASFLDH
BO21904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab4-PA | 213 | CG4921-PA | 1..213 | 1..213 | 1087 | 100 | Plus |
| Rab4-PB | 213 | CG4921-PB | 1..213 | 1..213 | 1087 | 100 | Plus |
| Rab14-PD | 215 | CG4212-PD | 8..215 | 5..211 | 598 | 55.8 | Plus |
| Rab14-PA | 215 | CG4212-PA | 8..215 | 5..211 | 598 | 55.8 | Plus |
| Rab14-PB | 239 | CG4212-PB | 32..239 | 5..211 | 598 | 55.8 | Plus |
