BO21912.complete Sequence
1840 bp assembled on 2010-01-06
GenBank Submission: KX795753
> BO21912.complete
GAAGTTATCAGTCGACATGACCGAAAATAAAGGCATAATGCTGGCCAAAT
CTGTTCAAAAACACGCTGGACGTGCCAAGGAGAAGATTCTACAAAACTTG
GGCAAAGTCGATCGCACTGCGGATGAAATCTTCGACGATCACCTGAACAA
CTTCAATCGCCAGCAGGCGAGTGCCAACAGATTACAAAAGGAGTTCAATA
ACTACATAAGATGTGTTCGCGCCGCACAAGCCGCCTCCAAGACTCTGATG
GATTCCGTTTGCGAGATCTACGAGCCACAATGGAGCGGTTACGATGCCCT
GCAAGCACAAACGGGTGCCTCGGAAAGTCTGTGGGCGGACTTTGCGCACA
AATTGGGGGATCAAGTCCTCATTCCGCTCAACACATACACTGGACAGTTT
CCCGAAATGAAGAAAAAAGTAGAGAAGCGCAACCGAAAGCTGATTGATTA
CGATGGCCAACGACACTCGTTTCAGAATCTGCAGGCCAATGCCAACAAGC
GCAAAGATGATGTCAAACTAACCAAAGGACGCGAGCAGCTGGAGGAAGCT
AGACGCACCTACGAAATCCTGAACACGGAACTGCATGACGAGCTGCCCGC
CTTGTATGACTCTAGGATACTGTTTCTGGTCACCAACTTGCAGACACTCT
TCGCCACAGAGCAAGTGTTCCACAACGAAACGGCTAAGATTTACTCGGAA
CTGGAGGCAATCGTCGACAAATTGGCCACAGAATCGCAGCGCGGCTCCAA
TACGCTACGCAAGCAAACAAGCAATCCCATCAAGACATCGAGCCCAGTGC
AGTCGCCAGTGAATAAGTTAAACAATGCCAACATCAACAGCAACTATCAG
AATCAAATAACTACAAACGGTGGCTCCAGTTTGGCAAACAGCCCGACATC
TACCAGCTCGTCGCTGCAAGAGCCTCGATTTGATTCAGTTTCTTCAACAC
CAGAACCACGCCCGGAATCCCCAGCAGCAGCACTAGTATCAGCCACGCCC
AGCAGTCCCGTCGAGAATGGGGTGACCACCAAATCATTGGAGCGTCCCGA
GCTCAGTGGTCTGAATGCGAGTGCCAAGGCAACCACAACCACGCAGACAT
CGCCCACGGAGGATAAGGCGGTGGTCAGTGAAGCAGTGAAGCCATCGGAA
ACTGAGGGAGCAGCAGTAGCAGCATCTGTGACACCTGCCCCGCCAGCGAC
ACCTGCCCAAATCAATGGCAACAACAATGAACCCTCGATTGTTAAGGAAG
GTGGCAAACAGCCCAAGGAACTGCCATCTACCACATCCAATGCAGAAGCT
GCTGCCGAGGCGGCGGCCAACAATGGCAATTCCATCGAGGAGCACAAGCA
GAAGAAACTAGGTAATGACACAACAGTCACAGCCACAGAAACAGTAACAG
TCACCCAGCACTCAGTTACATCAACAGATACCGATAATATAGTAACCATA
TCAGATACGAATACAGATACAGATACTAAGACCAGCACAGGCACTAGTCA
GAAAGGTAGACCAGTACCAGTAGTTAATAGGCACAGCGTAAATAATCTTA
ATAAGAATCCGTTTGAGGATGACGACGAACGCATCTACGAGGTGCCCGCT
GATGCCAATACTGCTGACTTGCCGCCTGGAGTTCTGTACCGGGTGAAGGC
CACCTATGGCTACGCCAAGGAGGATGTGGATGAGCTGAGCTTCGAGATTG
GTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAGGAGGAA
GGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTCTTCCC
CGCCAACTTCACGCGTCCCATCGCAAGCTTTCTAGACCAT
BO21912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amph-RA | 1809 | CG8604-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| Amph-RC | 1122 | CG8604-PC | 1..877 | 17..893 | 4385 | 100 | Plus |
| Amph-RB | 1509 | CG8604-PB | 1..877 | 17..893 | 4385 | 100 | Plus |
| Amph-RC | 1122 | CG8604-PC | 878..1119 | 1602..1822 | 860 | 91.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amph-RA | 3184 | CG8604-RA | 397..2202 | 17..1822 | 9030 | 100 | Plus |
| Amph-RC | 2497 | CG8604-RC | 397..1273 | 17..893 | 4385 | 100 | Plus |
| Amph-RB | 2884 | CG8604-RB | 397..1273 | 17..893 | 4385 | 100 | Plus |
| Amph-RC | 2497 | CG8604-RC | 1274..1515 | 1602..1822 | 860 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12609169..12609876 | 894..1601 | 3540 | 100 | Plus |
| 2R | 25286936 | 2R | 12607123..12607314 | 221..412 | 960 | 100 | Plus |
| 2R | 25286936 | 2R | 12607544..12607714 | 518..688 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 12610578..12610722 | 1601..1745 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 12606913..12607050 | 84..221 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 12608051..12608178 | 766..893 | 625 | 99.2 | Plus |
| 2R | 25286936 | 2R | 12607376..12607486 | 411..521 | 540 | 99.1 | Plus |
| 2R | 25286936 | 2R | 12607914..12607998 | 687..771 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 12611006..12611086 | 1742..1822 | 405 | 100 | Plus |
| 2R | 25286936 | 2R | 12594000..12594068 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:19:15 has no hits.
BO21912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:26:08 Download gff for
BO21912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 418..2223 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:31 Download gff for
BO21912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 397..2202 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:42 Download gff for
BO21912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amph-RA | 397..2202 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:42 Download gff for
BO21912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12607544..12607714 | 518..688 | 100 | -> | Plus |
| 2R | 12607916..12607997 | 689..770 | 100 | -> | Plus |
| 2R | 12608056..12608178 | 771..893 | 100 | -> | Plus |
| 2R | 12594000..12594068 | 17..85 | 100 | -> | Plus |
| 2R | 12606915..12607050 | 86..221 | 100 | -> | Plus |
| 2R | 12607124..12607314 | 222..412 | 100 | -> | Plus |
| 2R | 12607378..12607482 | 413..517 | 100 | -> | Plus |
| 2R | 12609169..12609876 | 894..1601 | 100 | -> | Plus |
| 2R | 12610579..12610721 | 1602..1744 | 100 | -> | Plus |
| 2R | 12611009..12611086 | 1745..1824 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:31 Download gff for
BO21912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8495561..8495683 | 771..893 | 100 | -> | Plus |
| arm_2R | 8495049..8495219 | 518..688 | 100 | -> | Plus |
| arm_2R | 8495421..8495502 | 689..770 | 100 | -> | Plus |
| arm_2R | 8481505..8481573 | 17..85 | 100 | -> | Plus |
| arm_2R | 8494420..8494555 | 86..221 | 100 | -> | Plus |
| arm_2R | 8494629..8494819 | 222..412 | 100 | -> | Plus |
| arm_2R | 8494883..8494987 | 413..517 | 100 | -> | Plus |
| arm_2R | 8496674..8497381 | 894..1601 | 100 | -> | Plus |
| arm_2R | 8498084..8498226 | 1602..1744 | 100 | -> | Plus |
| arm_2R | 8498514..8498591 | 1745..1824 | 97 | | Plus |
BO21912.pep Sequence
Translation from 16 to 1840
> BO21912.pep
MTENKGIMLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQ
ASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTG
ASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRH
SFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSR
ILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQ
TSNPIKTSSPVQSPVNKLNNANINSNYQNQITTNGGSSLANSPTSTSSSL
QEPRFDSVSSTPEPRPESPAAALVSATPSSPVENGVTTKSLERPELSGLN
ASAKATTTTQTSPTEDKAVVSEAVKPSETEGAAVAASVTPAPPATPAQIN
GNNNEPSIVKEGGKQPKELPSTTSNAEAAAEAAANNGNSIEEHKQKKLGN
DTTVTATETVTVTQHSVTSTDTDNIVTISDTNTDTDTKTSTGTSQKGRPV
PVVNRHSVNNLNKNPFEDDDERIYEVPADANTADLPPGVLYRVKATYGYA
KEDVDELSFEIGDLIRVIEYDDPEDQEEGWLMGQKEGTNEKGLFPANFTR
PIASFLDH
BO21912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amph-PA | 602 | CG8604-PA | 1..602 | 1..602 | 3078 | 100 | Plus |
| Amph-PB | 502 | CG8604-PB | 1..432 | 1..452 | 2138 | 94.7 | Plus |
| Amph-PC | 373 | CG8604-PC | 1..297 | 1..297 | 1499 | 98.7 | Plus |
| Amph-PC | 373 | CG8604-PC | 207..373 | 450..602 | 387 | 55.4 | Plus |
| CG34220-PA | 726 | CG34220-PA | 373..586 | 291..501 | 167 | 27.5 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 855..1134 | 227..520 | 167 | 22.6 | Plus |
| CG34220-PA | 726 | CG34220-PA | 304..577 | 238..494 | 164 | 22.7 | Plus |
