Clone BO21913 Report

Search the DGRC for BO21913

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:219
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptheph-RA
Protein status:BO21913.pep: Imported from assembly
Sequenced Size:1858

Clone Sequence Records

BO21913.complete Sequence

1858 bp assembled on 2010-01-06

GenBank Submission: KX799193

> BO21913.complete
GAAGTTATCAGTCGACATGATGTCCTGCCCCATTCCCATGCCAATGCCAA
TTTCTTCATTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAG
CGCGGAAGCGACGAACTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTC
CGACAATAACAATCAGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGG
GCACTGTGCTGGCCGGCGGAATTGCCAAGGCCTCAAAAGTCATCCACTTG
CGCAACATTCCGAACGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCAT
TCCGTTTGGACGTGTGACCAACGTGCTGGTGCTCAAGGGCAAGAACCAGG
CTTTCATCGAGATGGCCGACGAGATCTCCGCAACGTCAATGGTGTCCTGT
TACACAGTAACTCCGCCCCAGATGCGCGGCCGCATGGTCTACGTGCAGTT
TTCTAATCATCGCGAACTAAAGACGGACCAAGGTCACAACAACTCGACCG
CCCATAGCGACTACAGCGTCCAGTCCCCGGCGAGCGGATCGCCTCTGCCC
CTTAGCGCCGCTGCCAACGCGACCAGCAACAATGCAAACAGCTCAAGCGA
CAGCAACAGCGCCATGGGAATCTTACAAAACACAAGCGCCGTCAATGCGG
GCGGCAACACCAACGCTGCCGGGGGACCCAATACTGTGCTCCGTGTGATT
GTCGAGTCCTTGATGTACCCCGTCTCGCTGGACATACTGCACCAGATCTT
CCAGCGCTACGGCAAGGTGCTGAAGATTGTCACCTTCACAAAGAACAATT
CATTCCAGGCCCTCATCCAATATCCGGACGCCAATTCCGCCCAGCACGCC
AAGTCGCTCCTGGACGGGCAGAATATATACAACGGTTGCTGCACGTTGCG
TATTGATAACAGCAAGCTGACGGCTCTGAATGTTAAGTACAACAACGACA
AATCGCGCGACTTCACTAACCCCGCTCTGCCACCTGGTGAACCGGGAGTG
GATATCATGCCCACCGCCGGCGGACTGATGAACACCAATGATTTGCTTTT
GATCGCCGCCCGTCAGCGACCTTCTCTCTCAGGTGATAAAATAGTCAACG
GCCTGGGCGCCCCCGGAGTCCTGCCGCCCTTTGCCTTGGGCCTGGGCACT
CCACTGACCGGTGGATACAACAACGCACTGCCCAACTTAGCAGCTTTCTC
GCTGGCCAACAGTGGCGCCCTGCAGACGACCGCTCCTGCAATGCGAGGTT
ACTCGAATGTCTTGCTTGTCTCGAATTTAAATGAGGAGATGGTCACGCCT
GATGCTCTCTTTACCCTTTTTGGTGTATACGGCGATGTGCAACGTGTAAA
GATTCTGTACAACAAGAAGGACTCGGCACTCATACAAATGGCGGAGCCCC
AGCAAGCTTATTTGGCCATGTCTCACCTTGATAAATTACGTTTATGGGGA
AAGCCGATACGTGTGATGGCAAGCAAACACCAGGCCGTCCAGCTGCCCAA
GGAGGGACAGCCGGACGCAGGACTCACACGTGACTACTCGCAAAATCCGT
TGCACCGCTTCAAGAAACCGGGAAGCAAGAACTACCAGAACATCTATCCG
CCGTCGGCGACACTACATTTAAGCAACATTCCCTCATCCTGCTCTGAGGA
TGACATCAAAGAAGCTTTCACCTCAAACAGCTTTGAAGTTAAGGCATTCA
AATTTTTCCCGAAGGACCGTAAAATGGCACTGCTTCAACTGTTGTCCGTG
GAGGAGGCTGTCCTAGCACTGATTAAGATGCACAACCACCAGCTGTCCGA
GTCGAATCACCTGCGTGTAAGCTTCTCGAAGTCGAACATCGCAAGCTTTC
TAGACCAT

BO21913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
heph-RG 1848 CG31000-PG 21..1845 16..1840 9125 100 Plus
heph-RV 1827 CG31000-PV 1..1824 17..1840 9120 100 Plus
heph-RP 1827 CG31000-PP 1..1824 17..1840 9120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
heph-RV 3128 CG31000-RV 930..2754 16..1840 9125 100 Plus
heph-RP 2592 CG31000-RP 394..2218 16..1840 9125 100 Plus
heph-RN 7366 CG31000-RN 671..2495 16..1840 9125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31866118..31866436 809..491 1595 100 Minus
3R 32079331 3R 31865751..31866038 1094..807 1440 100 Minus
3R 32079331 3R 31873834..31874100 490..224 1335 100 Minus
3R 32079331 3R 31852592..31852809 1632..1415 1090 100 Minus
3R 32079331 3R 31865132..31865327 1288..1093 980 100 Minus
3R 32079331 3R 31851858..31851987 1840..1711 650 100 Minus
3R 32079331 3R 31881748..31881873 224..99 630 100 Minus
3R 32079331 3R 31857879..31857972 1415..1322 470 100 Minus
3R 32079331 3R 31959035..31959119 100..16 425 100 Minus
3R 32079331 3R 31852097..31852175 1711..1633 395 100 Minus
3R 32079331 3R 31864595..31864632 1324..1287 190 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:19:34 has no hits.

BO21913.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:26:10 Download gff for BO21913.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RM 1187..1269 17..99 100 -> Plus
heph-RM 1308..3047 100..1842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:39 Download gff for BO21913.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RN 672..2495 17..1842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:51 Download gff for BO21913.complete
Subject Subject Range Query Range Percent Splice Strand
heph-RN 672..2495 17..1842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:51 Download gff for BO21913.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31851856..31851987 1711..1842 98 <- Minus
3R 31852098..31852175 1633..1710 100 <- Minus
3R 31852592..31852808 1416..1632 100 <- Minus
3R 31865132..31865325 1095..1288 100 <- Minus
3R 31857879..31857971 1323..1415 100 <- Minus
3R 31864597..31864630 1289..1322 100 <- Minus
3R 31866119..31866436 491..808 100 <- Minus
3R 31873834..31874099 225..490 100 <- Minus
3R 31881748..31881871 101..224 100 <- Minus
3R 31959035..31959118 17..100 100   Minus
3R 31865751..31866036 809..1094 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:39 Download gff for BO21913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27707470..27707593 101..224 100 <- Minus
arm_3R 27784757..27784840 17..100 100   Minus
arm_3R 27677578..27677709 1711..1842 98 <- Minus
arm_3R 27677820..27677897 1633..1710 100 <- Minus
arm_3R 27678314..27678530 1416..1632 100 <- Minus
arm_3R 27683601..27683693 1323..1415 100 <- Minus
arm_3R 27690319..27690352 1289..1322 100 <- Minus
arm_3R 27690854..27691047 1095..1288 100 <- Minus
arm_3R 27691473..27691758 809..1094 100 <- Minus
arm_3R 27691841..27692158 491..808 100 <- Minus
arm_3R 27699556..27699821 225..490 100 <- Minus

BO21913.pep Sequence

Translation from 16 to 1858

> BO21913.pep
MMSCPIPMPMPISSLHKSEFEPVNIGVKRGSDELLSQAAVMAPASDNNNQ
DLATKKAKLEPGTVLAGGIAKASKVIHLRNIPNESGEADVIALGIPFGRV
TNVLVLKGKNQAFIEMADEISATSMVSCYTVTPPQMRGRMVYVQFSNHRE
LKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAM
GILQNTSAVNAGGNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRYGK
VLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYNGCCTLRIDNSK
LTALNVKYNNDKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLLIAARQ
RPSLSGDKIVNGLGAPGVLPPFALGLGTPLTGGYNNALPNLAAFSLANSG
ALQTTAPAMRGYSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNK
KDSALIQMAEPQQAYLAMSHLDKLRLWGKPIRVMASKHQAVQLPKEGQPD
AGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATLHLSNIPSSCSEDDIKEA
FTSNSFEVKAFKFFPKDRKMALLQLLSVEEAVLALIKMHNHQLSESNHLR
VSFSKSNIASFLDH

BO21913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
heph-PV 608 CG31000-PV 1..608 1..608 3109 100 Plus
heph-PP 608 CG31000-PP 1..608 1..608 3109 100 Plus
heph-PN 608 CG31000-PN 1..608 1..608 3109 100 Plus
heph-PB 608 CG31000-PB 1..608 1..608 3109 100 Plus
heph-PK 608 CG31000-PK 1..608 1..608 3109 100 Plus