BO21919.complete Sequence
2248 bp assembled on 2010-01-08
GenBank Submission: KX797170
> BO21919.complete
GAAGTTATCAGTCGACATGGCCAGCAGCGCCGGAAGTGCGGCATCCGGAT
CCGTTGTTCCCGGTGGCGGAGGTAGCGCCGCCTCCAGTTGTGCCACCATG
GCCCTGTCCACCGCCGGATCCGGTGGGCCGCCCGTGAACCACGCCCACGC
CGTCTGCGTGTGGGAGTTCGAGTCGCGCGGCAAGTGGCTGCCCTATTCGC
CGGCGGTGTCGCAGCACTTGGAACGCGCCCACGCCAAGAAACTGACGCGC
GTCATGCTGAGCGATGCGGATCCCAGCCTGGAGCAGTACTACGTCAACGT
GCGCACAATGACCCAGGAATCGGAGGCGGAAACGGCCGGCTCCGGCCTGC
TGACCATCGGTGTTCGGCGCATGTTCTACGCACCCAGCTCGCCGGCGGGC
AAGGGCACCAAGTGGGAGTGGTCGGGCGGCAGTGCCGATAGCAACAACGA
CTGGCGGCCCTACAACATGCACGTCCAGTGCATCATCGAGGACGCCTGGG
CGAGGGGCGAACAAACCTTGGACCTGTGCAACACCCACATCGGCCTGCCG
TACACCATTAACTTTTGCAATCTCACCCAGCTGCGCCAACCCAGCGGACC
CATGCGCAGCATTCGGCGTACCCAACAGGCGCCGTATCCCTTGGTGAAAC
TAACGCCACAACAGGCCAACCAACTCAAGTCGAATTCCGCCAGCGTGAGC
AGCCAGTACAACACTCTACCCAAACTGGGAGACACCAAGAGCCTGCACAG
AGTGCCCATGACCAGGCAACAGCACCCATTGCCCACCAGCCATCAAGTGC
AGCAGCAGCAGCATCAGCACCAGCATCAACAGCAGCAGCAGCAGCAACAT
CATCACCAGCATCAGCAACAACAGCATCAGCAACAGCAGCAACATCAGAT
GCAGCACCATCAAATCCATCATCAGACGGCGCCCAGGAAGCCGCCCAAGA
AGCACAGCGAGATCTCCACCACCAATCTACGCCAGATACTCAACAACCTA
AACATCTTCAGCAGCAGCACTAAGCACCAATCGAACATGTCGACGGCGGC
CAGTGCCAGTTCATCCTCCTCATCGGCCTCGCTGCACCATGCCAACCATC
TGTCGCATGCGCACTTTTCGCACGCCAAGAACATGCTGACTGCCTCGATG
AACAGTCATCATAGTCGCTGCTCGGAGGGATCGCTGCAGTCGCAAAGGAG
CAGCCGGATGGGCTCGCATCGCTCGAGATCGCGTACGCGGACCTCGGACA
CGGACACGAACAGTGTGAAATCGCATCGGCGGAGACCCAGTGTGGACACT
GTGTCCACTTACCTCAGCCACGAGAGCAAGGAGAGCCTGCGCAGCAGGAA
CTTTGCCATTTCGGTCAATGATCTGCTGGACTGCTCGCTTGGCAGCGATG
AAGTTTTTGTGCCCTCGCTGCCGCCATCGTCGCTGGGCGAAAGGGCGCCG
GTGCCGCCGCCATTACCACTGCATCCGCGACAGCAACAGCAGCAGCAACA
ACAGCAACAGCAGCTGCAGATGCAACAGCAGCAACAGGCGCAGCAGCAGC
AGCAGCAATCAATCGCCGGTTCGATTGTGGGCGTGGACCCGGCCAGCGAT
ATGATATCGCGTTTTGTCAAGGTGGTGGAGCCACCGCTGTGGCCCAATGC
CCAGCCCTGTCCCATGTGCATGGAGGAGCTGGTGCACTCCGCCCAGAATC
CGGCCATTTCGCTGAGTCGCTGCCAGCATCTCATGCATTTGCAGTGCCTC
AATGGGATGATAATTGCCCAGCAAAACGAAATGAACAAGAACCTTTTCAT
CGAGTGCCCTGTATGCGGCATCGTTTACGGCGAGAAGGTTGGCAATCAGC
CCATTGGCAGCATGTCGTGGAGCATAATCAGCAAGAATCTGCCAGGACAC
GAGGGTCAGAACACCATACAGATTGTTTACGACATTGCATCGGGACTGCA
GACGGAGGAGCATCCGCATCCGGGTCGTGCCTTCTTCGCCGTGGGATTTC
CGCGGATCTGCTACTTGCCGGACTGCCCGCTGGGGCGAAAAGTGCTGCGC
TTCCTCAAGATTGCATTCGATCGTCGGCTGCTTTTCTCGATCGGACGATC
GGTGACCACCGGACGCGAGGATGTGGTGATCTGGAACAGTGTGGATCACA
AGACGCAGTTCAATATGTTTCCGGATCCCACCTATTTGCAACGAACCATG
CAACAGCTGGTGCACCTGGGCGTGACGGATGCAAGCTTTCTAGACCAT
BO21919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dx-RA | 2217 | CG3929-PA | 1..2214 | 17..2230 | 11070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dx-RA | 3828 | CG3929-RA | 415..2628 | 17..2230 | 11070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6535520..6536804 | 505..1789 | 6425 | 100 | Plus |
| X | 23542271 | X | 6534413..6534902 | 17..506 | 2450 | 100 | Plus |
| X | 23542271 | X | 6537078..6537375 | 1933..2230 | 1490 | 100 | Plus |
| X | 23542271 | X | 6536865..6537009 | 1788..1932 | 725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2551 | 788..1031 | 419 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2479 | 861..1033 | 237 | 63.1 | Plus |
BO21919.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-08 08:58:14 Download gff for
BO21919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 404..2617 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:37 Download gff for
BO21919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 415..2628 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:15 Download gff for
BO21919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dx-RA | 415..2628 | 17..2232 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:15 Download gff for
BO21919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6534413..6534901 | 17..505 | 100 | -> | Plus |
| X | 6535521..6536804 | 506..1789 | 100 | -> | Plus |
| X | 6536867..6537009 | 1790..1932 | 100 | -> | Plus |
| X | 6537078..6537375 | 1933..2232 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:37 Download gff for
BO21919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6431111..6431408 | 1933..2232 | 99 | | Plus |
| arm_X | 6428446..6428934 | 17..505 | 100 | -> | Plus |
| arm_X | 6429554..6430837 | 506..1789 | 100 | -> | Plus |
| arm_X | 6430900..6431042 | 1790..1932 | 100 | -> | Plus |
BO21919.pep Sequence
Translation from 16 to 2248
> BO21919.pep
MASSAGSAASGSVVPGGGGSAASSCATMALSTAGSGGPPVNHAHAVCVWE
FESRGKWLPYSPAVSQHLERAHAKKLTRVMLSDADPSLEQYYVNVRTMTQ
ESEAETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNNDWRPYN
MHVQCIIEDAWARGEQTLDLCNTHIGLPYTINFCNLTQLRQPSGPMRSIR
RTQQAPYPLVKLTPQQANQLKSNSASVSSQYNTLPKLGDTKSLHRVPMTR
QQHPLPTSHQVQQQQHQHQHQQQQQQQHHHQHQQQQHQQQQQHQMQHHQI
HHQTAPRKPPKKHSEISTTNLRQILNNLNIFSSSTKHQSNMSTAASASSS
SSSASLHHANHLSHAHFSHAKNMLTASMNSHHSRCSEGSLQSQRSSRMGS
HRSRSRTRTSDTDTNSVKSHRRRPSVDTVSTYLSHESKESLRSRNFAISV
NDLLDCSLGSDEVFVPSLPPSSLGERAPVPPPLPLHPRQQQQQQQQQQQL
QMQQQQQAQQQQQQSIAGSIVGVDPASDMISRFVKVVEPPLWPNAQPCPM
CMEELVHSAQNPAISLSRCQHLMHLQCLNGMIIAQQNEMNKNLFIECPVC
GIVYGEKVGNQPIGSMSWSIISKNLPGHEGQNTIQIVYDIASGLQTEEHP
HPGRAFFAVGFPRICYLPDCPLGRKVLRFLKIAFDRRLLFSIGRSVTTGR
EDVVIWNSVDHKTQFNMFPDPTYLQRTMQQLVHLGVTDASFLDH
BO21919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dx-PA | 738 | CG3929-PA | 1..738 | 1..738 | 3913 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 14..364 | 205..520 | 261 | 26.7 | Plus |
| Smr-PE | 3601 | CG4013-PE | 14..364 | 205..520 | 261 | 26.7 | Plus |
| Smr-PD | 3601 | CG4013-PD | 14..364 | 205..520 | 261 | 26.7 | Plus |
| Smr-PG | 3607 | CG4013-PG | 14..370 | 205..520 | 250 | 27.6 | Plus |
| Smr-PF | 3601 | CG4013-PF | 141..521 | 215..576 | 199 | 24.4 | Plus |
| Smr-PE | 3601 | CG4013-PE | 141..521 | 215..576 | 199 | 24.4 | Plus |
| Smr-PD | 3601 | CG4013-PD | 141..521 | 215..576 | 199 | 24.4 | Plus |
