BO21921.complete Sequence
2356 bp assembled on 2010-01-25
GenBank Submission: KX798542
> BO21921.complete
GAAGTTATCAGTCGACATGAACCGCTCCGGCAATTCCCAGACCACACAGA
AACTCGTCAACCTGGACGATATCTGGAGCGAATTGGTCGAGGGCATTATG
CAGGTGTTTGAGCACGAGAAGTCCCTCACCCGCAGCCAGTACATGCGTTT
CTACACTCACGTCTATGACTACTGCACCAGCGTGAGCGCGGCTCCAAGCG
GACGGAGCAGCGGAAAGACAGGCGGAGCGCAGCTGGTGGGCAAGAAGCTG
TACGACCGGCTGGAACAATTTCTCAAGTCATACCTGAGCGAGCTGCTCAC
CAAGTTCAAGGCCATCAGCGGCGAGGAGGTACTCCTGTCGCGCTACACCA
AACAGTGGAAGTCGTATCAGTTCTCCAGTACCGTTCTGGACGGCATCTGC
AACTACCTGAATCGGAACTGGGTGAAGCGCGAGTGCGAGGAGGGGCAGAA
GGGTATCTACAAGATCTACCGACTGGCCCTCGTCGCCTGGAAGGGACATT
TGTTCCAAGTGCTAAATGAGCCGGTCACCAAGGCAGTGCTCAAGTCCATT
GAGGAGGAGCGTCAAGGCAAGCTCATTAACCGGTCGCTGGTCCGCGACGT
TATCGAGTGCTACGTGGAGCTCAGCTTTAACGAGGAGGATACCGATGCCG
AGCAGCAGAAGTTATCCGTCTACAAGCAAAACTTTGAAAACAAGTTCATC
GCAGACACATCAGCCTTCTACGAGAAGGAGTCGGACGCCTTTCTGTCCAC
CAACACGGTCACCGAGTATCTGAAGCACGTCGAAAACAGGCTGGAGGAGG
AGACGCAGCGCGTCCGCGGCTTTAATTCAAAGAACGGTCTTTCCTATCTG
CACGAGACCACAGCGGATGTGCTGAAGTCCACATGCGAAGAGGTTCTTAT
CGAAAAACATCTGAAAATCTTTCACACCGAGTTTCAGAATCTGCTCAACG
CAGACCGAAACGATGATCTGAAACGGATGTACTCCTTGGTCGCCCTCTCG
TCCAAAAACCTGACAGATCTCAAGTCCATCCTTGAGAACCATATACTCCA
CCAGGGCACGGAGGCCATTGCCAAGTGTTGCACTACCGACGCGGCCAACG
ATCCCAAGACGTACGTACAGACCATCCTGGACGTGCACAAGAAGTACAAC
GCCCTCGTTCTGACGGCGTTCAACAATGACAACGGATTTGTGGCCGCTTT
GGACAAGGCGTGTGGAAAGTTCATAAACTCGAACGTGGTCACGATCGCAA
ACAGTGCTAGCAAGTCGCCCGAATTGCTGGCCAAGTACTGCGATCTGTTA
TTAAAAAAATCCTCGAAAAATCCCGAGGACAAGGAGCTCGAGGACAATCT
TAACCAGGTGATGGTCGTGTTCAAGTATATCGAGGATAAGGACGTCTTCC
AAAAATATTACTCCAAGATGCTTGCTAAGCGCTTGGTTAACCACACATCG
GCTTCGGATGACGCCGAGGCTATGATGATCTCCAAACTGAAGCAGACATG
TGGTTACGAATACACCGTCAAGCTTCAGAGGATGTTCCAGGACATTGGCG
TCTCAAAGGACTTGAACTCGTACTTTAAGCAGTACCTGGCCGAAAAGAAC
TTGACCATGGAAATAGACTTTGGCATCGAAGTCCTGTCCTCAGGCTCTTG
GCCTTTCCAGCTGAGCAACAACTTCCTGCTACCATCTGAGCTGGAGCGGT
CAGTGCGACAGTTCAATGAGTTCTACGCCGCCCGCCACTCTGGCCGCAAG
CTCAACTGGTTGTATCAGATGTGCAAGGGCGAACTGATAATGAACGTCAA
CCGCAATAATTCCTCCACCTACACCCTGCAGGCCAGCACCTTCCAAATGT
CAGTGCTGCTCCAGTTTAACGATCAGCTCAGTTTTACAGTCCAGCAACTG
CAGGACAACACACAGACGCAGCAGGAGAACTTGATTCAGGTATTGCAAAT
ACTGCTCAAGGCGAAGGTGCTGACCTCCAGCGACAATGAGAACTCGCTGA
CGCCAGAGTCGACGGTGGAGCTGTTCCTCGATTACAAAAACAAGAAGCGC
CGAATTAACATCAACCAGCCTTTGAAGACTGAACTTAAAGTGGAGCAGGA
GACTGTACATAAGCACATAGAGGAGGACCGAAAATTACTGATCCAGGCGG
CGATCGTCCGCATCATGAAGATGCGCAAACGACTCAACCACACCAATCTC
ATATCGGAGGTGCTTAATCAGCTGTCAACGCGCTTTAAGCCTAAGGTGCC
CGTGATCAAGAAGTGCATAGACATCCTGATCGAGAAGGAGTATCTAGAGC
GAATGGAGGGACACAAAGACACATATAGTTATCTCGCCGCAAGCTTTCTA
GACCAT
BO21921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul1-RD | 2325 | CG1877-PD | 1..2322 | 17..2338 | 11610 | 100 | Plus |
| Cul1-RA | 2325 | CG1877-PA | 1..2322 | 17..2338 | 11610 | 100 | Plus |
| Cul1-RB | 2325 | CG1877-PB | 1..2322 | 17..2338 | 11610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul1-RD | 3184 | CG1877-RD | 367..2688 | 17..2338 | 11610 | 100 | Plus |
| Cul1-RA | 3207 | CG1877-RA | 390..2711 | 17..2338 | 11610 | 100 | Plus |
| Cul1-RB | 3886 | CG1877-RB | 388..2709 | 17..2338 | 11610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7918899..7919949 | 891..1941 | 5255 | 100 | Plus |
| 2R | 25286936 | 2R | 7917964..7918841 | 17..894 | 4390 | 100 | Plus |
| 2R | 25286936 | 2R | 7919999..7920402 | 1935..2338 | 2020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:11:49 has no hits.
BO21921.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:42 Download gff for
BO21921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin19-RA | 390..2711 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:51 Download gff for
BO21921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin19-RB | 388..2709 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:00 Download gff for
BO21921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul1-RB | 388..2709 | 17..2340 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:00 Download gff for
BO21921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7917964..7918839 | 17..892 | 100 | -> | Plus |
| 2R | 7918901..7919947 | 893..1939 | 100 | -> | Plus |
| 2R | 7920004..7920402 | 1940..2340 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:51 Download gff for
BO21921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3805469..3806344 | 17..892 | 100 | -> | Plus |
| arm_2R | 3806406..3807452 | 893..1939 | 100 | -> | Plus |
| arm_2R | 3807509..3807907 | 1940..2340 | 99 | | Plus |
BO21921.pep Sequence
Translation from 16 to 2356
> BO21921.pep
MNRSGNSQTTQKLVNLDDIWSELVEGIMQVFEHEKSLTRSQYMRFYTHVY
DYCTSVSAAPSGRSSGKTGGAQLVGKKLYDRLEQFLKSYLSELLTKFKAI
SGEEVLLSRYTKQWKSYQFSSTVLDGICNYLNRNWVKRECEEGQKGIYKI
YRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRSLVRDVIECYV
ELSFNEEDTDAEQQKLSVYKQNFENKFIADTSAFYEKESDAFLSTNTVTE
YLKHVENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEKHLK
IFHTEFQNLLNADRNDDLKRMYSLVALSSKNLTDLKSILENHILHQGTEA
IAKCCTTDAANDPKTYVQTILDVHKKYNALVLTAFNNDNGFVAALDKACG
KFINSNVVTIANSASKSPELLAKYCDLLLKKSSKNPEDKELEDNLNQVMV
VFKYIEDKDVFQKYYSKMLAKRLVNHTSASDDAEAMMISKLKQTCGYEYT
VKLQRMFQDIGVSKDLNSYFKQYLAEKNLTMEIDFGIEVLSSGSWPFQLS
NNFLLPSELERSVRQFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSS
TYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQILLKAK
VLTSSDNENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKH
IEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKC
IDILIEKEYLERMEGHKDTYSYLAASFLDH
BO21921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul1-PD | 774 | CG1877-PD | 1..774 | 1..774 | 3960 | 100 | Plus |
| Cul1-PA | 774 | CG1877-PA | 1..774 | 1..774 | 3960 | 100 | Plus |
| Cul1-PB | 774 | CG1877-PB | 1..774 | 1..774 | 3960 | 100 | Plus |
| Cul1-PC | 774 | CG1877-PC | 1..774 | 1..774 | 3960 | 100 | Plus |
| Cul2-PB | 753 | CG1512-PB | 6..753 | 12..774 | 1071 | 33.1 | Plus |
