Clone BO21939 Report

Search the DGRC for BO21939

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:219
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptSin3A-RB
Protein status:BO21939.pep: Imported from assembly
Sequenced Size:6220

Clone Sequence Records

BO21939.complete Sequence

6220 bp assembled on 2010-01-25

GenBank Submission: KX798953

> BO21939.complete
GAAGTTATCAGTCGACATGATGAAACGCACTCGCGTAGACGAGGTGCAAT
TTGGCACACGACCCGTTCCTCAGACCTCCGGAGGTGTGGGCGTTGGTGTC
GTCGGCGTAACTGGAGGTGGGCCAACATCCGGCGGCGGTGGCACTGCTAC
TGTGGGCGTCAATACGACGGGCGTTACCATTGGTACCGTCGTGCCCAGTG
CTCATAACGCCACCATCAGCGGGATCGGTTCCATTCACCATCGCATCCTT
ACTCCACAGCATGGAGGAGCACAAACCATTGCCTATTTGCCGTCCACCAC
GCCGACGGCTACGAATTTGAAGACCACAACCTCGATTGTGGATAGCACTA
CCGCTGGAGGACCAGTAGGAGCAGGAGCACAGGTGGCCGTAGGAGTTGGC
TCTGCAGCCGGCGGAGGAGGCGTGGTGGTCTCCACAGGGAGCACGGGAAC
GCAAACATTACAGTATACAACATCTTATAGTGTGGCTTCGATACAGGCTG
GTGGAACTCTGAAAGCCAACACAGCGGATGGCGCGAACACGGTACAGATT
CATGTCACAGGAGGAGGAGCTGCAAACAATCCTGCCAGTGCACAGACTGT
TTCCAGCAGCTCACAAACGGGCACAATCCGTCAGCGTACAATCAGCGGCA
CCCAGACAGTGGCCACTGCAGTGGGTAATCTAGCCACGATTTCCCAGCAA
CAACCGGTTCAACAATCACCTTTGGGCAAGGCCCAAACGCCTCCATCGTC
CGTGGTTGCCAACAGTATCCCAGTGGGTGGAACCACCCCACCACAAGGAC
AGTCGGGAAATGCCACGCCACGCTTAAAAGTGGAGGATGCGTTGAGCTAC
CTGGACCAAGTAAAGTACCAGTATGCAGACCAGCCGCAAATCTACAACAA
CTTCCTCGACATAATGAAGGAATTCAAGTCGCACTGCATCGACACACCCG
GAGTGATTGAGCGAGTCTCCACACTCTTCAAGGGGCACACAGAGCTGATA
TACGGCTTCAACATGTTCTTACCGCCGGGTTACAAGATCGAAATTCATTC
GGATGCTCTTGGCTGTTCGGTGCCGGTGGTTTCGATGCCCTCACCACCGG
GAGCGCCAACGAGCACAGGAACGGTGCATATGCTCACCGGAAATAGTTCG
ATGTCCGGTGCCGGACATATCGCCATCAAGACGACCAATGCTGCGACTTT
AACACCGGCAGCAGGGGCTGGAGCAGCGGCCGCAGCAGCAGCTGTGGCTC
AGATTCAATCCGCTGGAGCTGTAAATCTAATGACCCACGGCGGAGCCTCG
CTTACCCAGACCACTATTCATGCATTGCAACAGGCGACGCCTCCTCAATC
ACAATCTCCAGGCGGAGGTCATGTCCACGTGAGTGTAACAAACTCTACGG
CAGCAAACGCCGTAGTGCCCGGACAGCCAGGCATCTCCGTATCGGCGCAC
AATGTACCGCAGAACTACTCGAGAGATCGAGAAAGGGCCACCATAACACC
TACTGGGCAAGTGGCTGGAGCAGCGGCAAACGTGAATGCGTCTGCTAGTA
TAGTTGTCGGTGGACCTCCAACGCCCAATTCTCTAAGTGAGCTTAGCCCT
CATGGAGGAGCAGGAGGTGGGCCAGGTGCGGGAGCGGCGCAGCACAATCT
GCATCACATCCAGCAGGCGCATCAATCGATTTTGCTTGGGGAGACGGGAC
AGCAGAATCAGCCGGTGGAGTTCAATCACGCCATAACCTATGTAAATAAG
ATCAAGAATCGTTTCCAAAACCAGCCGGCCAAGTACAAGAAATTCCTCGA
AATTCTGCACGATTATCAGAGGGAGCAAAAGGTGATGAAGGAGGGCAGCC
TGAACCAGGGTAAAATGCTCACCGAGCAGGAGGTATACACGCAGGTGGCT
AAGCTTTTTGGCCAGGATGAGGATTTGCTTAGAGAGTTTGGCCAGTTTCT
TCCTGATGCCACCAACCACCAGTCCGGGCAGTACATGTCCAAGTCAGCGT
CTGTGCACAATGACCATGGCAAGCGTCCCACGGCTACTTTAAGCGGTGGA
GCTCACATAACCATGTCATCTGCTTCGCCAGCGCCAAGTGGATCCCCTCT
GCATTTGGGTGCAACGACTCTTCCGCAGATCGACAAAAGCGCCCATGCAG
CGGCCATAGGAAACCTTTCGGCGGTGAACACTAGTGTCAGCATTAAGACG
TACAATAATAATCAGCAACAGCAGAATCATGTGATCGGTTCAGGGCTGAA
TGCGACGCGGAACGATATTCTCTTTGAGAAGGACTATCACGCGGGTCTGC
AGCAGCAAGCGCATCAGCGAGGAGCTGGAGTTGGAGGCCATCATCATTTG
GCCGGGACTGCAGCGGGCGCCAATATCGGACGGCCTGGAGTGGGAGCCAG
CGTGATGGTGTCGTACGATAAAGAGCATCGAAATAATCATCATGTACAAA
AGTACGTTGGCCACGCGCCAAACCAGAATCTAACGCATGGTCATAACGCA
AAGAAATCACCAAGTTATGGCATTCCTTCGGTGATTGGTTCCATGCCGCA
CATTTCGGACAATTCGCTCGACCGCAGTTCACCGGGAATTAGTTACGCCA
CGCCACCATTGCCCTCTGGTCCACATGGACAGCATAACTCTGGTTCAGCT
ACGAGGAGGCCGGGTGATGACAGTTTAGTCGGACACTATGCTAGTGGAGC
GCCGCCTGCTAAGCGACCGAAGCCTTATTGTCGTGATGTCAGCTTTTCCG
AAGCATCGAGCAAGTGCACCATCTCCGACGCCGCGTTCTTTGACAAGGTG
CGAAAGGCGTTGAGAAGTCCAGAGGTCTACGACAACTTCCTGCGATGCCT
GACCCTTTTTAACCAGGAAATTGTCTCCAAAACGGAACTTCTTGGTCTGG
TATCACCGTTCTTGATGAAGTTCCCCGACCTGCTGAGATGGTTCACCGAC
TTTCTGGGACCGCCCTCTGGTCAACCTGCTGGAGGATTGATTGACGGCAT
GCCCTTAGCCGCAACGCAACGTCAGGGAGGTGGAAGCAGTAATAGTTCCC
ATGATCGAGGTACCAGTCACCAGAGTGCCGCCGAGTATGTCCAGGATGTG
GATCTGTCTTCTTGCAAGCGGCTGGGTGCATCCTATTGTGCTTTGCCGCA
GTCCACAGTACCTAAGAAGTGCAGCGGACGGACGGCTCTCTGCCGGGAAG
TGCTCAACGACAAATGGGTATCGTTCCCGACGTGGGCCAGCGAGGACTCC
ACTTTTGTTACATCGCGAAAAACTCAGTTCGAGGAGACAATTTACAGAAC
GGAGGACGAGCGATTCGAGCTGGACCTGGTCATCGAGGTTAATAGTGCCA
CGATTCGAGTGCTGGAGAACTTACAGAAGAAAATGTCACGAATGTCCACC
GAGGAATTGAGCAAATTCCATCTGGACGATCATCTGGGCGGCACATCTCA
AACGATACACCAGCGGGCCATTCATCGCATCTACGGCGACAAGTCGGGAG
AGATAATCACGGGAATGAAGAAAAATCCGTTTGTGGCGGTGCCTATTGTA
CTGAAGCGACTGAAAGTCAAGGAGGAGGAGTGGCGAGAAGCGCAAAAGAC
CTTCAATAAGCAATGGCGGGAACAGAACGAGAAGTACTACCTCAAGTCTC
TCGATCACCAGGCCATCAACTTTAAGCCCAACGACATGAAAGCCCTGCGC
TCAAAGAGTCTGTTTAACGAAATCGAGACGCTGTACGATGAGCGGCACGA
CCAAGAGGACGACGCCATGGAACCGTTTGGGCCGCATCTGGTGCTGCCGT
ACAAGGATAAAACCATTCTGGACGATGCCGCCAACCTGCTGATTCATCAT
GTGAAGCGTCAGACTGGCATCCAGAAGCAGGAGAAGCAAAAGATTAAGCA
GATCATCCGACAATTTGTGCCTGACCTTTTCTTCGCGCCGCGACAGCCAC
TAAGCGATGACGAACGCGATGACGCCTTTCCATTTTTGGTAGATGACAAT
ACGAAAATGGACGTGGACTCGCCACTGGGTCGCACGGAGTCTTCGACTCG
AAATGCCAAGAGTACGCCCAGTGAAAGTGCCTCTCCGGCGCGTAGCAATG
CAAGCACTAGCAGCGTAACACCAGCGGGAATTAAGAAAGAGACTGATGAC
TCGAAAGCGACGACAGGATCTTTTGCACCAGCGTCCTCGGCAACGGCATC
TTCAGCGACGCCTGTGGACGATGCTACGCCATCAACATCCTCAGCAGCGG
CGGCAGCATCAGCGGCATCGTCATCAACTGTTTCAGGAACCGAAGGCAAG
CCAAAGGATGACCCCCTATCGTCGCACAAGGAAGAAGGAGCCGGTAGCAC
CAGCTCTGGAGTTGCCACGAGTCCCAGGCAAGCCCAAGACACTGCAGGAG
CAGGCGTCGATGTGGAAATCAAACTGGAACATCCTGCGGACTTTTCCAAT
CCAAAGCTTCTACCGCCGCACGCGCACGGGCAACGCGAAGACGAATCCTA
CACGCTGTTCTTCGCTAACAACAATTGGTATTTATTCCTGCGGCTACATG
CGATTCTCTGCGACCGTCTGCATGTTATGTATGAAAGAGCGCGTTTGCTG
GCCATCGAGGAGGAGCGCTGTAGGGTGAATCGAAGGGAGAGCACAGCCAC
GGCGCTGCGGCTAAAGCCCAAACCGGAGATTCAAGTTGAAGACTACTACC
CCACCTTCCTTGATATGCTCAAGAACGTCCTAGACGGCAACATGGACTCG
AATACGTTCGAGGACACGATGCGTGAAATGTTTGGCATTTATGCCTACAT
CTCTTTCACGCTGGATAAGGTTGTCTCCAATGCTGTTCGCCAGCTGCAAT
ATTGTGTCACAGAACGAGCCGCACTGGATTGTGTAGAGCTGTTTGCAACG
GAGCAAAGGCGTGGCTGCACCGGAGGATTCTGTCGAGATGCGCACAAGAC
ATTTGACAGGGAGATGTCGTATCAGCGGAAAGCTGAGAGCATTCTCAACG
AGGAGAATTGCTTCAAAGTGTACATTTACAAAATCGATTGCCGTGTAACC
ATAGAGCTGCTTGATTCGGAGCCCGAGGAAGTCGATAAGCCGGCTGCGTT
GAAGGCCCAGAAGTTCAGCAAGTATGTAGAGCGGTTGGCGAATCCTGCGC
TCGGCGGTGGTGGCAATACTGGCCGCTCCGATTCGGCGCTCGGCAATGAC
AGCGTTGTAGATGGGTCCGATATCAAGACGGAGGCGGACGAAGATACTGC
CGAGTTGCGCTACAGAGAAGGTGGAATCGGAGGAGCAGGCAAGGCGCGCT
TTTTGGTGCGCAACAAGCGGAGATCAAAGCTGCTTGAGGAGCAAGTGCGT
CAGTTGTTTGAACATAGGCGGAATCGGATTGAGCAGCATGGTACTGCGGC
CTCACTTGAACCCATCTCCGTTGACAGTGCCATTTCAAGCAACAGCACCA
CCGGCGGTGGCGGCAGCGGCACTAATAACAACAATAATAATAATAATAAT
AACAACAGCTGGGGCGGCAAACGTCTGGAGAGGCTGGGCGCCCCACAGGT
GGGCTTGGCCGAGCAATACGCCTTTAATGATCGCGACGAGATCAGCACAA
ATATCAGCAACGGGCGATGTTTTGTGACCAGCAAGAATCTCAAGCTACTT
AAGTACGATGCAGTGCGTCGTGCCAAGAAGAGTCATTGCCGCGTAACTCA
GGCGAAATACGCTCACTTCCAAACGTACGTTAACAAGTGGCTTCAGCAAC
ATGTCAGCGAGCAACAGCAGCAGAACTGCGTCGACTGGCTGCTGGGCAAG
ACGGCAGACCAAATCAATGCCAGCGGCTGGGGATCCGCCAGCAAAACCAA
GACGGTACAGCAGAAGGATACTTCGAAGACACCGTATCGCATCTACAACA
GATACAGAGTGGTGCAGAGTGCAGTAAGCGGCGGTTTGATGAGTGCCACT
GCTCCAACTCCAGATGGTTCAGTTCCGGCGGTCAATTCCGCGCCATCAGG
CTCAGTTTCAACGGTGAACAATGTACAGGGCTCGGCGGCAGTATCCTCAA
CTTCCCACTCGATGTGCAACAGTAGCATTTTGTCCGCGGACTCCACCACC
AATACCAATGCGTCAGCACAGCAGCAGCAGCATTGCAACAGTGCAGCAGC
TGCAACAACACCGAATGCAGAGGCACTGCAACAGGTGCGACCCATGGAGA
GCGCAAGCTTTCTAGACCAT

BO21939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Sin3A-RE 6189 CG8815-PE 1..6186 17..6202 30930 100 Plus
Sin3A-RB 6189 CG8815-PB 1..6186 17..6202 30930 100 Plus
Sin3A-RC 6189 CG8815-PC 1..6186 17..6202 30930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Sin3A-RE 7722 CG8815-RE 799..6984 17..6202 30930 100 Plus
Sin3A-RB 7874 CG8815-RB 951..7136 17..6202 30930 100 Plus
Sin3A-RC 7474 CG8815-RC 551..6736 17..6202 30930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12582289..12583831 3297..1755 7715 100 Minus
2R 25286936 2R 12583901..12585183 1756..474 6415 100 Minus
2R 25286936 2R 12575978..12576501 6202..5679 2620 100 Minus
2R 25286936 2R 12580115..12580631 4490..3974 2585 100 Minus
2R 25286936 2R 12585255..12585711 473..17 2285 100 Minus
2R 25286936 2R 12576568..12576995 5680..5253 2140 100 Minus
2R 25286936 2R 12581202..12581579 3974..3597 1890 100 Minus
2R 25286936 2R 12579722..12580053 4821..4490 1660 100 Minus
2R 25286936 2R 12581639..12581947 3598..3290 1530 99.7 Minus
2R 25286936 2R 12579129..12579356 5254..5027 1140 100 Minus
2R 25286936 2R 12579415..12579623 5026..4818 1045 100 Minus
Blast to na_te.dros performed 2014-11-28 03:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2406 4187..4290 151 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6691..6915 4076..4294 130 55.7 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 671..718 1248..1201 123 72.9 Minus

BO21939.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:41 Download gff for BO21939.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RB 821..7006 17..6204 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:45 Download gff for BO21939.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 551..6736 17..6204 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:55 Download gff for BO21939.complete
Subject Subject Range Query Range Percent Splice Strand
Sin3A-RC 551..6736 17..6204 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:55 Download gff for BO21939.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12581202..12581577 3599..3974 100 <- Minus
2R 12581639..12581939 3298..3598 100 <- Minus
2R 12575976..12576499 5681..6204 99 <- Minus
2R 12576568..12576993 5255..5680 100 <- Minus
2R 12579129..12579356 5027..5254 100 <- Minus
2R 12579415..12579621 4820..5026 100 <- Minus
2R 12579724..12580053 4490..4819 100 <- Minus
2R 12580116..12580630 3975..4489 100 <- Minus
2R 12582289..12583829 1757..3297 100 <- Minus
2R 12583901..12585183 474..1756 100 <- Minus
2R 12585255..12585711 17..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:45 Download gff for BO21939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8472760..8473216 17..473 100   Minus
arm_2R 8463481..8464004 5681..6204 99 <- Minus
arm_2R 8464073..8464498 5255..5680 100 <- Minus
arm_2R 8466634..8466861 5027..5254 100 <- Minus
arm_2R 8466920..8467126 4820..5026 100 <- Minus
arm_2R 8467229..8467558 4490..4819 100 <- Minus
arm_2R 8467621..8468135 3975..4489 100 <- Minus
arm_2R 8468707..8469082 3599..3974 100 <- Minus
arm_2R 8469144..8469444 3298..3598 100 <- Minus
arm_2R 8469794..8471334 1757..3297 100 <- Minus
arm_2R 8471406..8472688 474..1756 100 <- Minus

BO21939.pep Sequence

Translation from 16 to 6220

> BO21939.pep
MMKRTRVDEVQFGTRPVPQTSGGVGVGVVGVTGGGPTSGGGGTATVGVNT
TGVTIGTVVPSAHNATISGIGSIHHRILTPQHGGAQTIAYLPSTTPTATN
LKTTTSIVDSTTAGGPVGAGAQVAVGVGSAAGGGGVVVSTGSTGTQTLQY
TTSYSVASIQAGGTLKANTADGANTVQIHVTGGGAANNPASAQTVSSSSQ
TGTIRQRTISGTQTVATAVGNLATISQQQPVQQSPLGKAQTPPSSVVANS
IPVGGTTPPQGQSGNATPRLKVEDALSYLDQVKYQYADQPQIYNNFLDIM
KEFKSHCIDTPGVIERVSTLFKGHTELIYGFNMFLPPGYKIEIHSDALGC
SVPVVSMPSPPGAPTSTGTVHMLTGNSSMSGAGHIAIKTTNAATLTPAAG
AGAAAAAAAVAQIQSAGAVNLMTHGGASLTQTTIHALQQATPPQSQSPGG
GHVHVSVTNSTAANAVVPGQPGISVSAHNVPQNYSRDRERATITPTGQVA
GAAANVNASASIVVGGPPTPNSLSELSPHGGAGGGPGAGAAQHNLHHIQQ
AHQSILLGETGQQNQPVEFNHAITYVNKIKNRFQNQPAKYKKFLEILHDY
QREQKVMKEGSLNQGKMLTEQEVYTQVAKLFGQDEDLLREFGQFLPDATN
HQSGQYMSKSASVHNDHGKRPTATLSGGAHITMSSASPAPSGSPLHLGAT
TLPQIDKSAHAAAIGNLSAVNTSVSIKTYNNNQQQQNHVIGSGLNATRND
ILFEKDYHAGLQQQAHQRGAGVGGHHHLAGTAAGANIGRPGVGASVMVSY
DKEHRNNHHVQKYVGHAPNQNLTHGHNAKKSPSYGIPSVIGSMPHISDNS
LDRSSPGISYATPPLPSGPHGQHNSGSATRRPGDDSLVGHYASGAPPAKR
PKPYCRDVSFSEASSKCTISDAAFFDKVRKALRSPEVYDNFLRCLTLFNQ
EIVSKTELLGLVSPFLMKFPDLLRWFTDFLGPPSGQPAGGLIDGMPLAAT
QRQGGGSSNSSHDRGTSHQSAAEYVQDVDLSSCKRLGASYCALPQSTVPK
KCSGRTALCREVLNDKWVSFPTWASEDSTFVTSRKTQFEETIYRTEDERF
ELDLVIEVNSATIRVLENLQKKMSRMSTEELSKFHLDDHLGGTSQTIHQR
AIHRIYGDKSGEIITGMKKNPFVAVPIVLKRLKVKEEEWREAQKTFNKQW
REQNEKYYLKSLDHQAINFKPNDMKALRSKSLFNEIETLYDERHDQEDDA
MEPFGPHLVLPYKDKTILDDAANLLIHHVKRQTGIQKQEKQKIKQIIRQF
VPDLFFAPRQPLSDDERDDAFPFLVDDNTKMDVDSPLGRTESSTRNAKST
PSESASPARSNASTSSVTPAGIKKETDDSKATTGSFAPASSATASSATPV
DDATPSTSSAAAAASAASSSTVSGTEGKPKDDPLSSHKEEGAGSTSSGVA
TSPRQAQDTAGAGVDVEIKLEHPADFSNPKLLPPHAHGQREDESYTLFFA
NNNWYLFLRLHAILCDRLHVMYERARLLAIEEERCRVNRRESTATALRLK
PKPEIQVEDYYPTFLDMLKNVLDGNMDSNTFEDTMREMFGIYAYISFTLD
KVVSNAVRQLQYCVTERAALDCVELFATEQRRGCTGGFCRDAHKTFDREM
SYQRKAESILNEENCFKVYIYKIDCRVTIELLDSEPEEVDKPAALKAQKF
SKYVERLANPALGGGGNTGRSDSALGNDSVVDGSDIKTEADEDTAELRYR
EGGIGGAGKARFLVRNKRRSKLLEEQVRQLFEHRRNRIEQHGTAASLEPI
SVDSAISSNSTTGGGGSGTNNNNNNNNNNNSWGGKRLERLGAPQVGLAEQ
YAFNDRDEISTNISNGRCFVTSKNLKLLKYDAVRRAKKSHCRVTQAKYAH
FQTYVNKWLQQHVSEQQQQNCVDWLLGKTADQINASGWGSASKTKTVQQK
DTSKTPYRIYNRYRVVQSAVSGGLMSATAPTPDGSVPAVNSAPSGSVSTV
NNVQGSAAVSSTSHSMCNSSILSADSTTNTNASAQQQQHCNSAAAATTPN
AEALQQVRPMESASFLDH

BO21939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sin3A-PE 2062 CG8815-PE 1..2062 1..2062 10678 100 Plus
Sin3A-PB 2062 CG8815-PB 1..2062 1..2062 10678 100 Plus
Sin3A-PC 2062 CG8815-PC 1..2062 1..2062 10678 100 Plus
Sin3A-PG 2066 CG8815-PG 1..2066 1..2062 10663 99.8 Plus
Sin3A-PH 2060 CG8815-PH 1..2060 1..2062 10615 99.5 Plus