BO22001.complete Sequence
6460 bp assembled on 2010-01-25
GenBank Submission: KX797367
> BO22001.complete
GAAGTTATCAGTCGACATGGCGGATGCCGCAGCACGTCAGCTGCAATACG
AGTACAAGGCGAACTCCAATCTTGTGCTGCAAGCCGATGTCCGACTCATC
GAACGTCCGCGCCGCGATGAGGCCACTGGCGAGGTGTGTTCCCTGGTGGG
AAAGCTGGACGGAACAAGGATGGGAGATCGGTACCAGCGAACGAAGCCGG
AGAAAACGGAGGAGCGCAAGGTGAAACGTCAGAAGCGCGACGAGGCCCAG
TACGATTTCGAGCGGATGAAGGGAGCCACTCTGCTCTCCGAGGGCATTGA
CGAGATGGTGGGCATTGTGTATCGACCCAAGACCCAGGAAACTCGTCAGA
CCTACGAGGTCCTGCTCAGTTTCATCCAGGAGGCTCTGGGGGATCAGCCC
AGGGATATCCTGTGCGGTGCCGCTGATGAGATTCTGGCTGTCCTCAAGAA
CGATCGTTTAAAGGATCGGGAGCGAAAGAAGGATATAGACAGCTTGCTGG
GCGCAGTTACAGATGAGCGATTCGCTCTGCTGGTTAACCTGGGCAAAAAA
ATCACAGACTTTGGCAGCGATGCCGTGAATGCTTTGACTGCTGCTCCCAA
CAACGAGGAGCAGATCGATGAAACCTACGGCATCAATGTTCAGTTTGAGG
AATCCGAAGAGGAGAGCGACAACGACATGTATGGCGAGATTCGCGACGAT
GATGCCCAGGATGAAGGAGAGGAGGCCCGCATTGATCACACACTGCATGC
AGAGAATCTAGCCAACGAGGAAGCCGCAAATAATGTAAAGAAAGAGCGCT
CCTTGCATCCTCTGGACATAGATGCGTATTGGTTGCAGCGTTGTCTGAGC
AAGTTCTACAAGGACGCCATGGTGTCGCAAAGCAAAGCCGCCGATGTGTT
GAAGATCCTCAAAGATGCCGCCGACGATCGCGATTGCGAAAATCAATTGG
TGCTTCTGCTGGGCTACGATTGCTTTGACTTCATTAAGCAATTGAAGCTT
AACCGGCAGATGGTCCTGTACTGCACCATGCTCGCCTCGGCCCAAACGGA
CAGCGAGCGGCAAAGGATTCGCGAGAAGATGCGCGGAAATTCTGCGTTGG
CCAAAATCCTTCGGCAATTGGATACGGGAAAGTCAGAGGATCAGGAGGAG
GGCGAAGCACGGGGAAGCAAGCGTGGCAAAGGCGATGCAGAGGATGGTGG
AGCGGCGGCTGCCGGGCAGGTGGCCGGTGTGCGACAGCTACTCGAGTTGG
AAGAGATGGCATTCACTCAAGGATCTCACTTTATGGCCAACAAGCGCTGT
CAGCTTCCCGACGGCTCCTACAGGAAACAACGAAAGGGCTACGAGGAGGT
GCACGTGCCTGCACTGAAACCCGTGCCATTTGATGCCAATGAGGAACTTC
AGCCTGTGGACAAGCTTCCGAAATATGTGCAGCCTGTGTTCGAGGGTTTC
AAGACCCTTAATCGTATCCAAAGTCGTTTGTACAAGGCCGCACTGGACAG
TGATGAGAATATGCTGCTGTGCGCCCCTACTGGAGCTGGTAAAACTAATG
TGGCACTGCTAACCATGATGCGGGAGATTGGAAAGCACATCAACGAGGAT
GGCACCATCAATGCGCAGGATTTCAAAATCATTTACGTGGCTCCCATGAA
ATCGCTGGTGCAGGAAATGGTTGGCAATTTTGGACGACGTCTTGCTTGCT
ATAATCTGACGGTCTCTGAGTTGACTGGAGATCACCAGCTGACCAGGGAA
CAGATCGCCGCCACGCAGGTGATTGTGTGCACACCAGAGAAGTGGGATAT
CATCACTCGAAAGGGAGGCGAGCGTACCTTTGTGAGCTTAGTCCGGTTGG
TTATCATCGATGAGATTCACTTGCTCCACGACGAGCGTGGTCCGGTGCTT
GAGGCCCTGGTGGCGCGTACGATAAGGAATATTGAAACTACCCAGGAGGA
GGTGCGATTGGTGGGCTTATCTGCCACACTGCCCAACTATCAGGACGTGG
CCACCTTCCTACGCGTAAAGCCCGATAAAGGCCTCTTCTACTTTGATAAC
AGCTATCGGCCTGTGTCCCTGGAGCAGCAGTATATCGGTGTGACGGAGAA
GAAGGCCCTAAAGCGATTCCAGGTGATGAACGAGATCGTTTATGAGAAGA
CCATGGAGCATGCTGGGCGTAATCAGGTCCTGGTCTTCGTACACTCGCGC
AAGGAGACTGGAAAAACGGCCAGGGCTGTGAGGGACATGTGCCTGGAGCA
GGATACCCTTGGTAGCTTTCTTAAGGAAGGATCAGCAAGCATGGAAGTGC
TGCGGACTGAAGCCGAACAAGTAAAGAACACAGAGCTTAAGGAGTTATTG
CCCTACGGCTTCGCCATTCATCATGCTGGAATGACCCGCGTCGATCGTAC
CTTGGTGGAAGATCTATTTGCTGATCGGCACATTCAAGTTTTGGTTTCCA
CCGCCACGCTAGCTTGGGGTGTCAATCTCCCTGCCCATACTGTAATCATC
AAGGGCACGCAGGTATACAATCCGGAAAAAGGACGTTGGGTGGAGCTGAG
TGCTTTGGATGTACTGCAGATGTTGGGTCGTGCTGGACGACCGCAGTATG
ATACCAAGGGTGAGGGTATTCTTATAACCAATCACAGTGAGTTGCAGTTC
TATCTCTCCTTGCTCAACCAGCAGTTGCCGATTGAGTCCCAATTCATCTC
CAAGCTTCCTGACATGCTCAATGCGGAGATTGTGCTAGGAACGGTCCAAC
ATCTCCAGGATGCAGTTAACTGGTTGGGCTACACTTATCTGTACATTAGA
ATGCTGAGGAATCCCACGTTGTACGGAGTTTCCCATGATGCCATCAAGGC
TGATCCTCTGTTGGAACAGCATCGTGCTGATCTCCTGCATACCGCAGCTT
GCTGTCTGGAGAGAAGTGGCCTTATTAAATACGATCGGAAGACGGGACAC
TTTCAGGTTACTGATCTGGGACGCATTGCCTCTCACTATTACCTAACCCA
TGAAACCATGCTGACTTACAACCAGCTCCTTAAGCAAACTCTTAGTGAGA
TTGAGTTGTTCCGCGTATTCTCCCTATCCTCGGAATTCCGGCATATTTCC
GTCCGAGAAGAGGAAAAGTTGGAGCTGCAGAAGCTCATGGAACGAGTGCC
CATTCCCATTAAGGAGTCCATTGAAGAGCACAGTGCCAAGGTGAATGTTT
TGCTGCAAGCCTATATCTCCCAGTTGAAACTGGAGGGCTTTGCATTGATG
TCGGACATGGTGTTTATTACCCAATCCGCTGCCCGTTTAATGAGAGCCAT
TTTTGAGATTGTATTGACCCGCGGATGGGCTCAATTGGCGGACAAAACGT
TGACGCTCTGCAAGATGATCGACAGAAGAATGTGGCAATCGATGACACCA
CTTAGGCAGTTCAAGAAGATGCCCGATGAGATTGCCAAGAAGCTGGAGAA
AAAACACTTCCCCTGGGGCAGGCTTTACGATCTAGAGCCACATGAACTTG
GTGAGCTGATTAGAGTGCCCAAGCTAGGAAAGACCATCCACAAGTTTGTG
CACCAGTTCCCCAAATTGGAGCTCTCCACGCACATTCAACCCATAACAAG
GGGAACTCTGAGAGTGGAACTAACAATTACACCGGATTTCCAATGGGATG
AAAAGGTGCATGGCCAGTCGGAAGGTTTCTGGGTTTTAATTGAAGATGTC
GACTCGGAACTCATTCTCCATCATGAGTTTTTCCTGCTGAAGCAGAAGTA
TTCCCAAGATGAGCACCAGCTTAAGTTCTTTGTGCCTGTCTTTGAACCTC
TGCCACCGCAGTACTTCCTTCGCATTGTCTCAGATCGTTGGATAGGTGCA
GAGACCCAATTACCAGTTTCTTTCCGACACTTGATTCTGCCCGAGAAGAA
TATGCCACCTACGGAGCTTTTGGATCTCCAACCGCTTCCTATTAGTGCAC
TCCGGCAGCCGAAGTTTGAATCCTTTTATTCGCAACGCTTCCCGCAATTC
AATCCCATTCAGACACAGGTCTTCAACGCAGTCTACAATAGTGATGAGAA
TGTCTTTGTTGGAGCACCAACCGGATCCGGAAAGATGACTATTGCAGAGT
TTGCCATCATGCGCTTGTTCACTACCCAATCCGATGCCCGATGTGTATAT
TTGGTCTCGGAGGAGGCATTGGCGGACTTAGTTTTTGCGGATTGGCATAG
CAAATTTGGATCCCTGGACATAAAAGTGGTTAAATTGACCGGCGAAACTG
GAACCGATCTTAAGCTCATAGCCAAGGGACAGCTGGTGATCACTACTGCG
GATAAGTGGGATGTGTTGTCTCGCAGATGGAAACAGAGGAAGAACGTACA
ATTGGTGAACCTGTTCATTGTGGACGAACTGCAGTTGGTTGGTGGCGAAG
AAGGTCCCGTTTTGGAAATTGTATGCTCCAGGATGCGATACATTAGCTCG
CAGATTGAGAAACAGATCAGAATAGTGGCGTTGTCTGCATCGCTAACGGA
TGCCAGGGATGTCGCCCAGTGGCTGGGCTGTAATCCCAATGCCACTTTCA
ATTTCCACCCCAGCGTGCGTCCCATTCCGTTGGAGCTGCACATCCAGGGC
TATAATGTCACTCACAACGCCACCAGAATTGCTACGATGTCCAAGCCTGT
TTACAATGCCATCCTCAAGTACAGCGCCCACAAGCCGGTGATTGTGTTTG
TCTCGTCCAGAAAGCAGGCCAGGCTCACTGCAATTGATGTTTTGACCTAC
GCAGCATCGGATTTGCAACCCAACCGTTTTTTCCATGCTGAGGAGGAGGA
CATCAAGCCGTTCCTCGAACGAATGACGGATAAAACTTTGAAGGAGACCC
TAGCGCAAGGAGTGGCCTATCTCCATGAGGGCCTATCCGCCTCAGATCAT
CGCCTGGTGGAGCAGCTGTTTGACTCTGGCGCCGTGCAAGTAGCTGTTAT
CTCCAGAGACCTTTGCTGGGGCATGAGCATCTCCGCTCACTTGGTGATCA
TCATGGACACACAATTTTACAATGGCAAGAATCATTCGTATGAGGACTAT
CCCATTACAGACGTGCTGCAAATGATTGGTCGAGCCAATCGGCCGAACGA
GGATGCGGATGCCAAATGCGTGCTGATGTGCCAGAGCAGCAAGAAGGACT
TCTTTAAGAAATTCATCAACGAGCCGCTGCCCATCGAAAGTCATTTGGAT
CATAGAATGCATGATCACTTTAACGCCGAGGTGGTCACCAAGACAATTGA
GAACAAACAGGATGCCGTTGATTATCTCACCTGGACGTTCCTCTACAGAC
GATTGACCCAAAATCCCAACTACTACAATCTGCAGGGTGTCACGCATCGC
CATCTCTCCGACCATCTTTCGGAGTTGGTGGAGAATACGCTGAGCGATCT
AGAACAGTCCAAGTGTATTAGCGTGGAGGATGATATGGACACGCTGCCAC
TCAATCTGGGCATGATTGCTGCCTACTATTACATCAACTACACAACTATC
GAGCTCTTCAGTTTGTCCCTCAACAGCAAAACAAAAGTGCGGGGCCTGCT
GGAAATTATTTCATCGGCAGCTGAGTACGAGGATGTTGTGGTCAGGCATC
ATGAGGAGCAGGTTCTGCGCACGCTGTCTCAGCGACTGCCCAACAAACTC
ACAGGACCCAATGAAACGGCTCCAAAATTCAATGATCCGCACATCAAGAC
CAATTTGCTGCTTCAGGCTCATCTTTCGCGATTGCAACTGGGACCTGAAC
TGCAAGGCGATACGGAGCAGATACTGAGCAAGGCCATCCGCCTCATTCAG
GCCTGCGTAGATGTGCTGAGTTCAAATGGCTGGCTGTCGCCGGCTGTGGC
TGCCATGGAGCTGGCTCAGATGGTCACGCAGGCCATGTGGAGCAAGGACT
CGTACTTGAAACAGTTGCCGCACTTTAGTCCCGAGATTGTCAAGCGGTGC
ACAGAGAAGAAAATCGAAACCGTTTTCGATATCATGGAATTGGAGGACGA
GGATCGCACTCGCCTGCTGCAGCTCTCCGATTTACAAATGGCCGATGTTG
CTCGATTCTGCAACCGTTACCCCAACATTGAGCTGAACTATGAGGTGGTG
GACAAGGATCGCATCAACTCAGGATCAACCGTTAATGTAGTGGTTCAACT
GGAACGTGAGGATGAGGTCACTGGCCCAGTCATTGCTCCATTCTTCCCGC
AGAAGCGCGAAGAAGGATGGTGGGTCGTCATAGGTGATCCCAAGACCAAC
TCCCTGCTCTCCATCAAACGGCTCACGCTGCAGCAAAAGGCAAAGGTCAA
GCTGGACTTTGTGGCACCTAGTCCGGGCAAACACGACTACACTCTGTACT
ACATGAGCGATTCCTATTTGGGTTGTGATCAGGAGTACAAGTTTTCCATC
GAAGTGGGTGACTTCCAGTCGGAAAGCGAAAGCGAGTCAGATGCAAGCTT
TCTAGACCAT
BO22001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Ab-RA | 6429 | CG5931-PA | 1..6426 | 17..6442 | 32115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Ab-RA | 6707 | CG5931-RA | 118..6546 | 14..6442 | 32130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15962115..15966858 | 5501..758 | 23705 | 100 | Minus |
| 3L | 28110227 | 3L | 15966916..15967612 | 757..61 | 3485 | 100 | Minus |
| 3L | 28110227 | 3L | 15960997..15961481 | 6442..5958 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 15961538..15961820 | 5959..5677 | 1415 | 100 | Minus |
| 3L | 28110227 | 3L | 15961876..15962051 | 5676..5501 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 15967708..15967755 | 61..14 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:21 has no hits.
BO22001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:47 Download gff for
BO22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5931-RA | 105..6530 | 17..6444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:53 Download gff for
BO22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Ab-RA | 121..6546 | 17..6444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:53 Download gff for
BO22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Ab-RA | 121..6546 | 17..6444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:53 Download gff for
BO22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15960995..15961479 | 5960..6444 | 99 | <- | Minus |
| 3L | 15961538..15961820 | 5677..5959 | 100 | <- | Minus |
| 3L | 15961876..15962050 | 5502..5676 | 100 | <- | Minus |
| 3L | 15962115..15966858 | 758..5501 | 99 | <- | Minus |
| 3L | 15966916..15967611 | 62..757 | 100 | <- | Minus |
| 3L | 15967708..15967752 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:53 Download gff for
BO22001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15954095..15954579 | 5960..6444 | 99 | <- | Minus |
| arm_3L | 15954638..15954920 | 5677..5959 | 100 | <- | Minus |
| arm_3L | 15954976..15955150 | 5502..5676 | 100 | <- | Minus |
| arm_3L | 15955215..15959958 | 758..5501 | 99 | <- | Minus |
| arm_3L | 15960016..15960711 | 62..757 | 100 | <- | Minus |
| arm_3L | 15960808..15960852 | 17..61 | 100 | | Minus |
BO22001.pep Sequence
Translation from 16 to 6460
> BO22001.pep
MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGT
RMGDRYQRTKPEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGI
VYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEILAVLKNDRLKD
RERKKDIDSLLGAVTDERFALLVNLGKKITDFGSDAVNALTAAPNNEEQI
DETYGINVQFEESEEESDNDMYGEIRDDDAQDEGEEARIDHTLHAENLAN
EEAANNVKKERSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKILKD
AADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQR
IREKMRGNSALAKILRQLDTGKSEDQEEGEARGSKRGKGDAEDGGAAAAG
QVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPAL
KPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENML
LCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQE
MVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKG
GERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVG
LSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKR
FQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGS
FLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDL
FADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVL
QMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDM
LNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLE
QHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLT
YNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKE
SIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVL
TRGWAQLADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPW
GRLYDLEPHELGELIRVPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRV
ELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEH
QLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPPTE
LLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGA
PTGSGKMTIAEFAIMRLFTTQSDARCVYLVSEEALADLVFADWHSKFGSL
DIKVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLF
IVDELQLVGGEEGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVA
QWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSKPVYNAIL
KYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHAEEEDIKPFL
ERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLC
WGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAK
CVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDA
VDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKC
ISVEDDMDTLPLNLGMIAAYYYINYTTIELFSLSLNSKTKVRGLLEIISS
AAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQ
AHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELA
QMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRL
LQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDE
VTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVA
PSPGKHDYTLYYMSDSYLGCDQEYKFSIEVGDFQSESESESDASFLDH
BO22001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Ab-PA | 2142 | CG5931-PA | 1..2142 | 1..2142 | 11033 | 100 | Plus |
| CG5205-PA | 2183 | CG5205-PA | 259..2179 | 308..2132 | 3536 | 39 | Plus |
| mus308-PA | 2059 | CG6019-PA | 251..648 | 498..891 | 307 | 27.4 | Plus |
| l(2)35Df-PA | 1055 | CG4152-PA | 163..554 | 493..870 | 237 | 24.4 | Plus |
| mus301-PA | 1051 | CG7972-PA | 281..670 | 1344..1721 | 171 | 23.8 | Plus |
