BO22040.complete Sequence
481 bp assembled on 2009-12-08
GenBank Submission: KX797727
> BO22040.complete
GAAGTTATCAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCG
AGTTCAAAGAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATC
ACAACAAAGGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCAC
AGAGGCCGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACG
GCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAG
GACACCGATAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAA
GGATGGCAACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAA
ATCTGGGCGAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAG
GCTGATATCGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTAT
GATGACATCGAAGGCAAGCTTTCTAGACCAT
BO22040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-RD | 450 | CG8472-PD | 1..447 | 17..463 | 2235 | 100 | Plus |
Cam-RC | 450 | CG8472-PC | 1..447 | 17..463 | 2235 | 100 | Plus |
Cam-RE | 450 | CG8472-PE | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-RD | 3406 | CG8472-RD | 130..576 | 17..463 | 2235 | 100 | Plus |
Cam-RC | 5672 | CG8472-RC | 208..654 | 17..463 | 2235 | 100 | Plus |
Cam-RE | 1435 | CG8472-RE | 155..601 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12269192..12269435 | 194..437 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 12264742..12264918 | 19..195 | 885 | 100 | Plus |
3R | 32079331 | 3R | 25812965..25813068 | 341..444 | 235 | 81.7 | Plus |
X | 23542271 | X | 5619953..5620044 | 384..293 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:16:39 has no hits.
BO22040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 15:04:47 Download gff for
BO22040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RA | 198..644 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:24 Download gff for
BO22040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RB | 114..560 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:42 Download gff for
BO22040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cam-RE | 155..601 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:42 Download gff for
BO22040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12264741..12264917 | 17..194 | 99 | -> | Plus |
2R | 12269193..12269435 | 195..437 | 100 | -> | Plus |
2R | 12273766..12273791 | 438..465 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:24 Download gff for
BO22040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8152246..8152422 | 17..194 | 99 | -> | Plus |
arm_2R | 8156698..8156940 | 195..437 | 100 | -> | Plus |
arm_2R | 8161271..8161296 | 438..465 | 92 | | Plus |
BO22040.pep Sequence
Translation from 16 to 481
> BO22040.pep
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSKA
SFLDH
BO22040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cam-PD | 149 | CG8472-PD | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PC | 149 | CG8472-PC | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PE | 149 | CG8472-PE | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PB | 149 | CG8472-PB | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PA | 149 | CG8472-PA | 1..149 | 1..149 | 758 | 100 | Plus |
Cam-PD | 149 | CG8472-PD | 1..81 | 77..154 | 175 | 45.7 | Plus |
Cam-PC | 149 | CG8472-PC | 1..81 | 77..154 | 175 | 45.7 | Plus |
Cam-PE | 149 | CG8472-PE | 1..81 | 77..154 | 175 | 45.7 | Plus |
Cam-PB | 149 | CG8472-PB | 1..81 | 77..154 | 175 | 45.7 | Plus |