Clone BO22040 Report

Search the DGRC for BO22040

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:220
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCam-RA
Protein status:BO22040.pep: Imported from assembly
Sequenced Size:481

Clone Sequence Records

BO22040.complete Sequence

481 bp assembled on 2009-12-08

GenBank Submission: KX797727

> BO22040.complete
GAAGTTATCAGTCGACATGGCCGATCAGCTGACAGAGGAACAGATCGCCG
AGTTCAAAGAGGCATTCTCGCTATTCGACAAAGACGGCGATGGCACCATC
ACAACAAAGGAGTTGGGCACAGTTATGCGCTCCCTGGGCCAGAATCCCAC
AGAGGCCGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACGGCAACG
GCACAATTGACTTCCCTGAATTCCTTACCATGATGGCACGCAAAATGAAG
GACACCGATAGCGAAGAGGAGATCCGAGAAGCCTTCAGAGTGTTCGACAA
GGATGGCAACGGCTTCATCTCGGCGGCCGAGTTGCGTCACGTGATGACAA
ATCTGGGCGAGAAACTCACAGACGAGGAGGTCGATGAGATGATCCGGGAG
GCTGATATCGATGGCGACGGTCAGGTCAATTACGAAGAATTCGTGACTAT
GATGACATCGAAGGCAAGCTTTCTAGACCAT

BO22040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-RD 450 CG8472-PD 1..447 17..463 2235 100 Plus
Cam-RC 450 CG8472-PC 1..447 17..463 2235 100 Plus
Cam-RE 450 CG8472-PE 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-RD 3406 CG8472-RD 130..576 17..463 2235 100 Plus
Cam-RC 5672 CG8472-RC 208..654 17..463 2235 100 Plus
Cam-RE 1435 CG8472-RE 155..601 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12269192..12269435 194..437 1220 100 Plus
2R 25286936 2R 12264742..12264918 19..195 885 100 Plus
3R 32079331 3R 25812965..25813068 341..444 235 81.7 Plus
X 23542271 X 5619953..5620044 384..293 190 80.4 Minus
Blast to na_te.dros performed on 2014-11-28 02:16:39 has no hits.

BO22040.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 15:04:47 Download gff for BO22040.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RA 198..644 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:24 Download gff for BO22040.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RB 114..560 17..465 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:42 Download gff for BO22040.complete
Subject Subject Range Query Range Percent Splice Strand
Cam-RE 155..601 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:42 Download gff for BO22040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12264741..12264917 17..194 99 -> Plus
2R 12269193..12269435 195..437 100 -> Plus
2R 12273766..12273791 438..465 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:24 Download gff for BO22040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8152246..8152422 17..194 99 -> Plus
arm_2R 8156698..8156940 195..437 100 -> Plus
arm_2R 8161271..8161296 438..465 92   Plus

BO22040.pep Sequence

Translation from 16 to 481

> BO22040.pep
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQ
DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSKA
SFLDH

BO22040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cam-PD 149 CG8472-PD 1..149 1..149 758 100 Plus
Cam-PC 149 CG8472-PC 1..149 1..149 758 100 Plus
Cam-PE 149 CG8472-PE 1..149 1..149 758 100 Plus
Cam-PB 149 CG8472-PB 1..149 1..149 758 100 Plus
Cam-PA 149 CG8472-PA 1..149 1..149 758 100 Plus
Cam-PD 149 CG8472-PD 1..81 77..154 175 45.7 Plus
Cam-PC 149 CG8472-PC 1..81 77..154 175 45.7 Plus
Cam-PE 149 CG8472-PE 1..81 77..154 175 45.7 Plus
Cam-PB 149 CG8472-PB 1..81 77..154 175 45.7 Plus