BO22113.complete Sequence
2839 bp assembled on 2010-01-25
GenBank Submission: KX797108
> BO22113.complete
GAAGTTATCAGTCGACATGGTGGTTTTAGAAACTGCCAGCGCCCTTTTGG
GCGGCCCGTATGCCCAGGGCGCTCCCGCCCTGAAAATGGTGCAGAAACGC
TACATTGGATTACATCACTGGCTGGGACCAATCCGCTCCAAGGAGCTAAA
GGAGCATATTGTAAGTGACGACGTGCTTTCGCTCGCTTTTAACCACAATC
AACAACTGTTTCGCTCGCAGAATCCGGGCCTAGCAGCAGTTGCCACAAAT
GCAGCGGCCGCAGCAGCAGCCGCAGCAGCTGCCACATCGGCAGCGAGTGC
TGCGGCAGCGGTGGGCGCACCACCCGTTCCCAACGGATCGCTGCAGCAGT
CGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGATG
CACATGGCGGCCGCGTCGCAACAATTTTTGGCCGCCCAGCAGCAGGCGCA
AAATGCGGCCTATGCCGCCCAACAGGCCACGTCCTACGTCATCAATCCGG
GCCAGGAGGCTGCCCCGTATATGGGCATGATTGCCGCCGCCCAGATGCCG
TACTATGGCGTAGCACCATGGGGCATGTATCCGGGCAATCTGATTCCGCA
ACAGGGAACGCAGCCGCGCCGCCCCCTCACCCCCTCGCAGCAGGGTGCCG
AGAATCAGCCGTATCAGGTCATCCCGGCATTCCTCGATCACACGGGCTCC
TTGCTGATGGGAGGACCTCGCACCGGGACGCCGATGCGTCTGGTTAGCCC
CGCCCCCGTTCTGGTGCCCCCGGGCGCTACCCGTGCCGGCCCCCCGCCCC
CGCAGGGCCCACAGCTGTATCAGCCGCAGCCGCAGACGGCCCAACAGAAT
CTCTACTCGCAGCAGAATGGATCCAGTGTCGGAGGCCTCGCCTTGAACAC
GAGCTCGTTGACGGGTCGCCGCGACTCCTTCGACCGCAGCACCTCCGCCT
TCAGTCCCTCGACCATGGACTACACCAGCAGCGGTGTGGCAGCGGCCGCC
AATGCGGTGAACAGCACAGTGGCCCAGGCAGCAGCAGCTGCCGCAGCAGC
CGCCGCAGCGCGTGGCAAGTGGCCGGGAGCGATGTCGGGAGCGGCCAGTG
GAGCCTACGGAGCCCTGGGAGCGGGCAATGCTTCGGCCAGTCCCCTGGGC
GCACCAATCACGCCGCCGCCATCGGCGCAATCCTGTCTCCTGGGCAGTCG
GGCACCTGGAGCCGAGTCCCGCCAGCGGCAGCAGCAACAACAGCAGCTGG
CCGCCGTTGGTCTGCCGGCGACTGCAGCAGCTGCTCAGGCAGCGGTGGCC
GCGGCTGCCAACAATATGTTCGGATCCAACAGCTCGATCTTCTCGAATCC
CCTGGCCATTCCGGGTACCGCAGCTGTGGCAGCTGCAGCGGCAGCAGCAG
CGGCCGCCAACTCGCGTCAGGTGGCTGCCACGGCAGCGGCAGCAGCGGCT
GTGGCAGCAGCAGCCGGCGGAGTGGGAGGTGCCCCACAGCCAGGAAGATC
TCGCCTTCTCGAAGATTTCCGCAACCAGCGGTATCCAAATCTTCAGCTAC
GCGATCTCGCTAACCACATTGTGGAGTTCTCACAGGATCAGCACGGCTCG
CGGTTTATCCAACAGAAGTTGGAGCGGGCCACCGCCGCCGAGAAGCAAAT
GGTGTTCAGCGAGATCCTGGCGGCAGCCTATAGCCTGATGACCGATGTCT
TTGGCAACTATGTCATCCAGAAGTTCTTTGAGTTCGGCACTCCCGAGCAG
AAGAACACGCTGGGCATGCAGGTCAAGGGTCATGTGCTGCAGCTGGCGCT
GCAAATGTATGGCTGCCGAGTGATTCAGAAGGCTCTGGAGAGCATCTCGC
CGGAGCAGCAGCAGGAAATCGTCCACGAACTGGACGGACATGTGCTGAAA
TGCGTCAAGGATCAGAATGGCAATCATGTGGTGCAAAAGTGCATTGAGTG
CGTGGACCCCGTGGCGCTGCAGTTCATCATCAATGCTTTCAAGGGTCAGG
TTTACTCGCTAAGCACCCATCCGTATGGATGCCGGGTGATCCAGAGAATC
CTTGAGCATTGCACTGCCGAACAGACCACGCCCATTTTGGACGAACTGCA
TGAGCACACCGAACAGTTGATTCAGGACCAATATGGCAACTATGTTATTC
AGCATGTGCTTGAACACGGCAAGCAGGAGGATAAGTCGATTCTTATCAAC
AGCGTGCGCGGCAAAGTTCTGGTGCTATCACAGCACAAGTTCGCCTCAAA
CGTTGTGGAGAAATGTGTTACCCATGCCACTCGCGGAGAACGCACTGGTC
TCATAGACGAGGTCTGCACCTTCAACGACAACGCGTTGCACGTGATGATG
AAGGATCAGTATGCCAACTATGTGGTCCAAAAAATGATCGATGTATCGGA
GCCGACGCAGCTCAAGAAGCTGATGACCAAGATCCGGCCCCACATGGCCG
CCTTGCGCAAGTACACCTACGGCAAGCACATCAATGCCAAGTTGGAGAAG
TACTACATGAAGATAACCAATCCCATTACGGTGGGCACAGGAGCTGGAGG
AGTGCCGGCAGCCTCGTCGGCGGCCGCAGTCAGCAGTGGTGCCACCTCGG
CATCGGTAACCGCCTGCACCAGTGGCAGCAGCACCACCACGACCAGCACT
ACCAACAGCCTGGCCTCACCCACCATTTGTTCGGTGCAGGAGAACGGCAG
CGCCATGGTTGTGGAGCCCTCCTCCCCGGACGCCTCCGAGTCCTCGTCCT
CGGTGGTGTCAGGCGCTGTCAACAGCAGCTTGGGTCCCATTGGACCCCCG
ACCAACGGCAACGTTGTGCTGGCAAGCTTTCTAGACCAT
BO22113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pum-RE | 2808 | CG9755-PE | 1..2805 | 17..2821 | 13980 | 99.9 | Plus |
| pum-RG | 4602 | CG9755-PG | 1977..4599 | 199..2821 | 13055 | 99.8 | Plus |
| pum-RB | 3558 | CG9755-PB | 933..3555 | 199..2821 | 13055 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pum-RE | 4685 | CG9755-RE | 690..3494 | 17..2821 | 13980 | 99.9 | Plus |
| pum-RG | 10223 | CG9755-RG | 2996..5618 | 199..2821 | 13055 | 99.8 | Plus |
| pum-RB | 7473 | CG9755-RB | 1481..4103 | 199..2821 | 13055 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9071752..9073031 | 2162..883 | 6385 | 99.9 | Minus |
| 3R | 32079331 | 3R | 9070948..9071437 | 2821..2332 | 2435 | 99.8 | Minus |
| 3R | 32079331 | 3R | 9080556..9081022 | 669..203 | 2335 | 100 | Minus |
| 3R | 32079331 | 3R | 9079744..9079964 | 885..665 | 1090 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9071507..9071676 | 2331..2162 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 9157111..9157261 | 167..17 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 9098696..9098737 | 202..161 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10894..11127 | 1225..1463 | 191 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2421 | 1367..1464 | 147 | 63.6 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..725 | 1475..1380 | 141 | 64.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6914 | 1223..1401 | 136 | 55.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1153 | 1208..1314 | 121 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2427 | 1380..1464 | 118 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6857 | 1223..1302 | 118 | 62.5 | Plus |
BO22113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:50 Download gff for
BO22113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pum-RE | 90..2894 | 17..2823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:05 Download gff for
BO22113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pum-RE | 690..3494 | 17..2823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:07 Download gff for
BO22113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pum-RE | 690..3494 | 17..2823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:07 Download gff for
BO22113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9070946..9071437 | 2332..2823 | 99 | <- | Minus |
| 3R | 9071507..9071675 | 2163..2331 | 100 | <- | Minus |
| 3R | 9071752..9073029 | 885..2162 | 99 | <- | Minus |
| 3R | 9079745..9079961 | 668..884 | 99 | <- | Minus |
| 3R | 9080558..9081022 | 203..667 | 100 | <- | Minus |
| 3R | 9098696..9098737 | 161..202 | 100 | <- | Minus |
| 3R | 9157118..9157261 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:05 Download gff for
BO22113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4905467..4905683 | 668..884 | 99 | <- | Minus |
| arm_3R | 4896668..4897159 | 2332..2823 | 99 | <- | Minus |
| arm_3R | 4897229..4897397 | 2163..2331 | 100 | <- | Minus |
| arm_3R | 4897474..4898751 | 885..2162 | 99 | <- | Minus |
| arm_3R | 4906280..4906744 | 203..667 | 100 | <- | Minus |
| arm_3R | 4924418..4924459 | 161..202 | 100 | <- | Minus |
| arm_3R | 4982840..4982983 | 17..160 | 100 | | Minus |
BO22113.pep Sequence
Translation from 16 to 2839
> BO22113.pep
MVVLETASALLGGPYAQGAPALKMVQKRYIGLHHWLGPIRSKELKEHIVS
DDVLSLAFNHNQQLFRSQNPGLAAVATNAAAAAAAAAAATSAASAAAAVG
APPVPNGSLQQSQQQQQQQQQQQQQQQMHMAAASQQFLAAQQQAQNAAYA
AQQATSYVINPGQEAAPYMGMIAAAQMPYYGVAPWGMYPGNLIPQQGTQP
RRPLTPSQQGAENQPYQVIPAFLDHTGSLLMGGPRTGTPMRLVSPAPVLV
PPGATRAGPPPPQGPQLYQPQPQTAQQNLYSQQNGSSVGGLALNTSSLTG
RRDSFDRSTSAFSPSTMDYTSSGVAAAANAVNSTVAQAAAAAAAAAAARG
KWPGAMSGAASGAYGALGAGNASASPLGAPITPPPSAQSCLLGSRAPGAE
SRQRQQQQQQLAAVGLPATAAAAQAAVAAAANNMFGSNSSIFSNPLAIPG
TAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQPGRSRLLED
FRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEI
LAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGC
RVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVA
LQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQ
LIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKC
VTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLK
KLMTKIRPHMAALRKYTYGKHINAKLEKYYMKITNPITVGTGAGGVPAAS
SAAAVSSGATSASVTACTSGSSTTTTSTTNSLASPTICSVQENGSAMVVE
PSSPDASESSSSVVSGAVNSSLGPIGPPTNGNVVLASFLDH
BO22113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pum-PE | 935 | CG9755-PE | 1..935 | 1..935 | 4738 | 100 | Plus |
| pum-PF | 925 | CG9755-PF | 1..925 | 1..935 | 4657 | 98.7 | Plus |
| pum-PH | 921 | CG9755-PH | 1..921 | 1..935 | 4642 | 98.5 | Plus |
| pum-PG | 1533 | CG9755-PG | 660..1533 | 62..935 | 4422 | 100 | Plus |
| pum-PB | 1185 | CG9755-PB | 312..1185 | 62..935 | 4422 | 100 | Plus |
