BO22118.complete Sequence
2938 bp assembled on 2010-01-25
GenBank Submission: KX794650
> BO22118.complete
GAAGTTATCAGTCGACATGGCATCAATATCGGATGACGGCATGGCGCTGA
GTGGCTACCTCAAGAAGCTGAAGACCATGAAGAAGAAGTTCTTTGTGCTG
TACGAGGAGACGAGCACTTCGGCAGCCCGGCTGGAGTACTACGATACCGA
AAAGAAGTTCCTGCAAAGAGCCGAGCCAAAAAGGGTTATATATCTGAAGA
ATTGCTTCAACATCAATCGCCGTTTGGACACCAAGCATAGATTTGTCATT
GTGCTCTCCTCCAGAGACGGTGGATTCGGCATCGTTCTCGAGAACGAAAA
TGATTTACGCAAATGGTTGGACAAACTACTAGTTCTACAAAGGAACATAG
CCAATTCGAATGGAACAGCGCACTCACCTTATGACCACGTTTGGCAAGTT
GTCATTCAAAAGAAGGGTATTTCGGAGAAAGTTGGAATCACCGGAACCTA
CCACTGTTGCCTTACTTCAAAATCCCTGACATTCGTGTGCATTGGACCGG
AGAAGACGCCCAATGGCGAGGATCGCGTTGCGAGCATTGAAATACTTTTG
ACCACGATCAGGCGATGCGGTCATGCATCCCCACAATGTATATTCTACGT
GGAACTTGGCCGCCAAAGTGTCTTGGGATCTGGTGATCTGTGGATGGAGA
CGGATAACGCAGCTATTGCTACTAATATGCACAACACGATACTGAGCGCT
ATGTCAGCCAAAACAGAGTCGAACACGAATTTAATAAACGTTTATCAGAA
TAGACCTGACTTAAGTCACGAGCCCATGAGAAAGCGATCGTCGTCTGCAA
ACGAAGCATCGAAGCCGATAAACGTAAATGTCATACAAAATAGTCAAAAC
TCTCTCGAATTGCGCAGCTGCAGTTCGCCCCATAACTATGGTTTCGGCAG
AGAGAGATGCGATAGCTTACCAACCAGAAATGGAACCCTAAGCGAGTCCA
GCAATCAAACGTACTTTGGTTCCAACCATGGACTGCGATCCAATACTATA
TCTGGCATCCGTCCGCACTCAACCAACAAGCATAGTAATAGTCCAACGTT
CACCATGCCATTAAGATGCTCAGAATCCGAAGAGTCATCAATTAGTGTCG
ATGAATCCGACGACAACGGCAGTTTTAGCCACTACAGATTAAACACGCGG
TCATCGGAGACGGCAATTCCTGAGGAAAACATTGATGACTTTGCCAGTGC
GGAATTATTTAGCAAAGTCACCGAACAAAATGTAAGTGACGAAAACTACA
TACCGATGAATCCAGTCAATCCTACCGATGCTATCCATGAAAAGGAGAAG
GCTGATATGCAGAGATTGGAAGATGCTTCGCTGCATTTCAACTTTCCGGA
GCACGCGTCGGAAAAGCTTGCTAAGGATTTTGATCTGGACTCTGATAACC
AATGCTGTCGTCCCATTCGCGCCTATTCGATAGGCAACAAGGTTGAGCAT
TTAAAGTTTAATAAGCGCCTGGGACACTTGAATGATACGGGACAGAATCC
GAATCGCGTGCGAGCCTACTCGGTTGGCTCCAAATCGAAGATACCGCGCT
GCGACCTGCAGCGAGTGGTCCTCGTGGAGGACAATAAACATGAGTTCACA
GCGAATAGGAGTCAGAGTAGCATTACCAAGGAAGGAACCAGCTATGGCAG
CAGTGCCAATCGACAAAAGAAGTCCACAAGTGCTCCACTCCTCAGTCTGA
AGAACCAGATAAACTCCGACCGAATGAGTGACTTAATGGAAATTGATTTT
TCACAAGCAACCAATTTGGAAAAGCAGAAGTTCATCAAGAATAATGAAAT
TCCGAAATACATTGAAAACGTGTTCCCAAAAGCCCCGCGAACGGATAGCT
CCAGCCTAACTCTGCACGCCACAAGTCAAAAGGACATTTTCAATGGCACC
AAACTAAATAACACTGCGATCACATCCGAGGATGGTTACCTCGAGATGAA
GCCAGTCGGTAATGGATACACTCCCAGTTCGAATTGCCTGCCAATGAAAG
TGGAGAAACTCAAGCTATCCGACTATCAGACAGCACCGCCACTCACCGCA
ACAGCCGCACCAGTGCACGATTTAAACAAAATTAGCACATACAATATATC
CGCTGAGAAATGGAGAGAACAGCCCAGCAGAAGCGAGGAAAAGAAGTCGA
ACTCGCCATTGAATGACAACACCTTTAGCTCGAAACCCACAAATGTCGAG
AGTACAAGCAAAAGCCATGATGTTCATTCAGCAAATCAAATTGATTGCGA
GAAAGTGTGCGCGCAGAGCAGCGATAAGCTAAATAATCATCTGGCCGACA
AGATTGTCGAGAACAACAATTTGGATATAGGCGGGCATGAGGAAAAGAAG
TTGGTTCATTCGATAAGCAGCGAAGACTACACACAAATCAAGGACAAATC
GAATGATTTCACAAAATTTAACGAAGCCGGCTACAAAATTCTGCAAATTA
AAAGCGACAGCTCACTCATCTCATCGAAGCTATACCAAAAGGGTATACAC
AAGGATAACTTGGAGCGTTCGCAGAGACTTACAGAGAGTGTGAATACGAT
TCCCGATAATGCCACCGCCACCGCGGTGAGCAGCAGCTCACTCACCAAAT
TCAATATAAATTCAGCAAAGCCAGCCGCCGCCGCCGATTCGCGTAGCACT
GGCACAGATCCAAGTACACCACAGAACATTCTACAGATTAAAGATTTGAA
TTTCCCCTCAAGGTCGTCGTCTCGCATATCCCAGCCGGAGCTGCACTACG
CCAGCCTAGATCTTCCCCATTGCAGTGGCCAAAATCCAGCTAAATACCTG
AAGAGAGGATCACGCGAATCGCCGCCGGTGTCCGCATGCCCGGAGGATGG
GAATACCTATGCGAAAATCGACTTTGACCAATCCGACTCCTCTTCCTCCT
CATCGAACATATTTAATACGGCAAGCTTTCTAGACCAT
BO22118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 2907 | CG5686-PC | 1..2904 | 17..2920 | 14520 | 100 | Plus |
| chico-RB | 2907 | CG5686-PB | 1..2904 | 17..2920 | 14520 | 100 | Plus |
| chico-RA | 2907 | CG5686-PA | 1..2904 | 17..2920 | 14520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-RC | 3578 | CG5686-RC | 546..3450 | 16..2920 | 14525 | 100 | Plus |
| chico-RB | 3104 | CG5686-RB | 72..2976 | 16..2920 | 14525 | 100 | Plus |
| chico-RA | 3229 | CG5686-RA | 197..3101 | 16..2920 | 14525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10242640..10244158 | 2920..1402 | 7595 | 100 | Minus |
| 2L | 23513712 | 2L | 10245655..10246022 | 383..16 | 1840 | 100 | Minus |
| 2L | 23513712 | 2L | 10244601..10244854 | 1143..890 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 10244908..10245105 | 892..695 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 10245410..10245591 | 564..383 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 10244219..10244388 | 1401..1232 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 10245220..10245352 | 696..564 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 10244457..10244545 | 1232..1144 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:42 has no hits.
BO22118.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:39 Download gff for
BO22118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 184..3087 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:23 Download gff for
BO22118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 198..3101 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:35 Download gff for
BO22118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chico-RA | 198..3101 | 17..2922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:35 Download gff for
BO22118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10242638..10244158 | 1402..2922 | 99 | <- | Minus |
| 2L | 10244219..10244387 | 1233..1401 | 100 | <- | Minus |
| 2L | 10244457..10244545 | 1144..1232 | 100 | <- | Minus |
| 2L | 10244601..10244853 | 891..1143 | 100 | <- | Minus |
| 2L | 10244910..10245103 | 697..890 | 100 | <- | Minus |
| 2L | 10245220..10245351 | 565..696 | 100 | <- | Minus |
| 2L | 10245410..10245590 | 384..564 | 100 | <- | Minus |
| 2L | 10245655..10246021 | 17..383 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:23 Download gff for
BO22118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10242638..10244158 | 1402..2922 | 99 | <- | Minus |
| arm_2L | 10244219..10244387 | 1233..1401 | 100 | <- | Minus |
| arm_2L | 10244457..10244545 | 1144..1232 | 100 | <- | Minus |
| arm_2L | 10244601..10244853 | 891..1143 | 100 | <- | Minus |
| arm_2L | 10244910..10245103 | 697..890 | 100 | <- | Minus |
| arm_2L | 10245220..10245351 | 565..696 | 100 | <- | Minus |
| arm_2L | 10245410..10245590 | 384..564 | 100 | <- | Minus |
| arm_2L | 10245655..10246021 | 17..383 | 100 | | Minus |
BO22118.pep Sequence
Translation from 16 to 2938
> BO22118.pep
MASISDDGMALSGYLKKLKTMKKKFFVLYEETSTSAARLEYYDTEKKFLQ
RAEPKRVIYLKNCFNINRRLDTKHRFVIVLSSRDGGFGIVLENENDLRKW
LDKLLVLQRNIANSNGTAHSPYDHVWQVVIQKKGISEKVGITGTYHCCLT
SKSLTFVCIGPEKTPNGEDRVASIEILLTTIRRCGHASPQCIFYVELGRQ
SVLGSGDLWMETDNAAIATNMHNTILSAMSAKTESNTNLINVYQNRPDLS
HEPMRKRSSSANEASKPINVNVIQNSQNSLELRSCSSPHNYGFGRERCDS
LPTRNGTLSESSNQTYFGSNHGLRSNTISGIRPHSTNKHSNSPTFTMPLR
CSESEESSISVDESDDNGSFSHYRLNTRSSETAIPEENIDDFASAELFSK
VTEQNVSDENYIPMNPVNPTDAIHEKEKADMQRLEDASLHFNFPEHASEK
LAKDFDLDSDNQCCRPIRAYSIGNKVEHLKFNKRLGHLNDTGQNPNRVRA
YSVGSKSKIPRCDLQRVVLVEDNKHEFTANRSQSSITKEGTSYGSSANRQ
KKSTSAPLLSLKNQINSDRMSDLMEIDFSQATNLEKQKFIKNNEIPKYIE
NVFPKAPRTDSSSLTLHATSQKDIFNGTKLNNTAITSEDGYLEMKPVGNG
YTPSSNCLPMKVEKLKLSDYQTAPPLTATAAPVHDLNKISTYNISAEKWR
EQPSRSEEKKSNSPLNDNTFSSKPTNVESTSKSHDVHSANQIDCEKVCAQ
SSDKLNNHLADKIVENNNLDIGGHEEKKLVHSISSEDYTQIKDKSNDFTK
FNEAGYKILQIKSDSSLISSKLYQKGIHKDNLERSQRLTESVNTIPDNAT
ATAVSSSSLTKFNINSAKPAAAADSRSTGTDPSTPQNILQIKDLNFPSRS
SSRISQPELHYASLDLPHCSGQNPAKYLKRGSRESPPVSACPEDGNTYAK
IDFDQSDSSSSSSNIFNTASFLDH
BO22118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chico-PC | 968 | CG5686-PC | 1..968 | 1..968 | 5018 | 100 | Plus |
| chico-PB | 968 | CG5686-PB | 1..968 | 1..968 | 5018 | 100 | Plus |
| chico-PA | 968 | CG5686-PA | 1..968 | 1..968 | 5018 | 100 | Plus |
