BO22121.complete Sequence
3034 bp assembled on 2010-01-25
GenBank Submission: KX799425
> BO22121.complete
GAAGTTATCAGTCGACATGGTCCTTGACATGGAATCGGACGATTCTCATG
CCAGTTCGGCGTCCAATTCCTCGGAGTCACGGTCGAATTCGCCCACCAAC
GACAAGGATGAAGTTGTCGCGGATCATGGTGGCGAATCGCCTGGCGGAGG
TGGCGACCCCATACTGGATCGGTCCGATCGAGCCCCCTCCACCAGTAGCT
CATCGTCCAACTCCAGTTCCAGTTCGAATCGCAGTGACCTGTCCAAGAAG
CAGAAGAAGAGCTCGAGCAGCAGCAGCGGAAGTGGCAGTGGCAGTGGCAG
TAGCTCTTCCAGCGGCTCCTCTAGCGAGGATGAGGGCGATCAGGAACCGG
AACAGGAGGTGCAGCGTCTTTCCGAGCAGCAACGGGAGCAGCAGCAGCAT
TCGCCGATAAATGAGCGAGAGTCCGAGTCTGCTGCTGGAACGCCTGTTAA
TGCGGATCAACCTGGTTCGCCAAACGCTAAGTCACAGCCTAGCTCGTTCC
TCTCATCCGTTCGCAGTCGAAGCGTCAGTCCCCAGCTGTACAATCAGGCT
GCCGTGGATCTGAATATCAGTCACGACGACCTTAGCGATGTCAGCGACAT
CGAGGGTGAGGAGAAGCGAACCTCATCCAAAAATTCAATGCGTCCGGCGG
ATGAGAACGAGGATGGCGCCATTTCCAATGATTCACTGCCCACTCTCGGC
GAAGAGGATGAGGTTGAGCAAAAGCAGTCCACGCCTAACGGCAAAGCGTC
AAGCGGGGATGAGAAGGAGCCTTTCGCAAAAGAAACCCATACCGACGACG
CGTCCAATGGACTTGCACCAGCGACCGCTTTGCAGGAGGACTTGGTCAAA
ACTCATGACGACGACGCCTTGGACTTCGAGGCGGAAGAGGGCGAGTGTCC
GGAGCAGGCAAAGGAGCCTTCACCGATGGAGAGCACAGCCAACGAAACAA
ACCAGACCAAGAGTACGACCAAGGTGTCGCAAGACGAGGGCGATGACGAC
GGCGAGGTGGATAAAGACGGCGATGATAAAGACGGCGATGACAAAGACAC
ACGCAAGGATGGCGCTGGCAATGGCTGCTTGGAGGATGGCGCAGGCAATG
ACAGCCGGAAGGACGACGCAGGCAATGGCTGCCTGGAGGAAGGCGAGGAG
GAAAAAGATATAGTGTCGGTGTCGACTTCATCCAGCCAGGAAAAAGTGGA
AGAGGGGGAGCTGGAGGAGGGCGAGGTGTCCGATGAGGATGAAAAGCGAC
CGGAGGAGACTGAACCGAAGCCGGTGTGTCGATTCTACACTCGGGGTCAG
TGCACCTGGGGGATGAGCTGCCGCTTCCTGCATCCTGGCGTCACAGACAA
GGGCAACTACACAATGTTCGACAACGTTATACGGCCGGTCCCGATGCAGG
GAGGTTCAACTGGAGCCAGCGCCCCAGCAGCCCCATCATCGACCGCTGCC
CCTCGTGCCGGAGGGAGTGCCTATAGTTCCCACGCCTCGGCGACTGCTGA
CTATCATGATTATCGAACTGAGCGGCCATTGCATCACCGACCGCCGCTCC
TTCATGCGCCCAGTATTTATGGTGCACCCGTCCACGACGCCCGCACTCTT
TTGCCTGACGGAGCTCCGGTGGTGGTGGAGAATGCCTGGGAGCGCGGCCT
GCGCACCGCTAAGGAGATGATGCGAAAAGCCAACAAACGCAAGGAGCAGG
ACATGGACTTTGAGGACAAGAAGATGAACCTAACACTGTCGCCCGATGAA
ATGGAGAAGGATTCGTACTACCTCAAGGATCGGGGCGGTAGCAGCGCCCG
ATCACCGCCGCCTCCTTCGGCCAATGTGCGCGAACAGCCACTCAATCCAC
TCAGTATGCCTCTGTCCATGCATCCGCATGCCGTTGCCCATGCAAATCCT
CGTGCTCTTCTGCCCTTGCAGTACTCCGTTTACGGACCGCCACCCGATCG
CTACGGCCGACCTCAGTATATGCCACCGCAGTACGATGATGTGGATGCGT
ACGGCCGTATGACTAGATATCGCGAATTGCCGCCCCACCGGATGCCGCAC
TATGAGGACGATCGCCGTTCGAGACCAACGCGCGAGGTCATCGTACAGCG
TGTGGAGGCCGCTGGACGTGGTGATGAGTGGAGTGATCCCTGGATGCGAT
CCAAGTCCGTTGGCCGGGGATCATATGAACGCGAGGATCGCCGCCGTCGA
GATAGGCGCAGCTACAGCAGCAACTCGTCGTATTCCACCTCGAACAGTTC
GCAGAGTGACTCCAGCTCGGACTCGTCGCGCTCAAGCAGTCCGTCCGATC
ATAAGCGGCGCTACGGTTCGCACAAACTAGCAACCGCGACCGCTACTTCA
CGCCGCCATGGCGGTCGTGCGGCCCGTTCGCCCAGCCAGATACCGCGACG
CCCCCGGCGCACTTCCAAGGGAAGCCTTTCGCCTTCATATAAGAGACCAG
CTGTGGACAAGCGTGGCGTTGGACACAGTCCGTCTTCCAAGCGTAAGAAG
CTGTCGTCGCCAGCACCCAAGAAGTTTGACAAGTTGCGACGCCGTCGCAG
CTCGAGTTCTTCAGACTCAGACTCATCGGATACGTCGTACTCCGATTCGG
AATCGGGATCGTCGTCGTCGGACAGCTCGTCGGGATCAAGAGAAACGCCC
CAGAAGCGTGTGAGGGCCACCGACAAGGCGCTCAACGAGCGGAAGCTTAT
TAGCAAGCCAGCTGAACAATCAACCAAGAAGCGCTCGCCTATTTCCATTG
AGATTAAGAAAACATCAAACATGGTTGGTGTTTCGGCGTTGGCCTCAGCC
AGCAACTCAGCCGACTCCGATGCGGAGAAGGATCACGATAACGGTAAGGA
CAAGGAAAAGGATCACGTTAAGGAGAAAGACAAGGATTGCAAAGAGAAGG
ACAAGGATAAGGACGGCATGAAGGACAAAGAAGGCAAAAAGTCACGCCGT
GAGGAGCTGCTGAAGCAATTGCGCGCCGTCGAGGATGCGATCGCCAAGAA
GCGTTCCAAGCTAAACGCAAGCTTTCTAGACCAT
BO22121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1677-RC | 3003 | CG1677-PC | 1..3000 | 17..3016 | 15000 | 100 | Plus |
| CG1677-RB | 3003 | CG1677-PB | 1..3000 | 17..3016 | 15000 | 100 | Plus |
| CG1677-RA | 3003 | CG1677-PA | 1..3000 | 17..3016 | 15000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1677-RC | 3461 | CG1677-RC | 108..3108 | 16..3016 | 15005 | 100 | Plus |
| CG1677-RB | 4077 | CG1677-RB | 724..3724 | 16..3016 | 15005 | 100 | Plus |
| CG1677-RA | 3679 | CG1677-RA | 326..3326 | 16..3016 | 15005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7282242..7283868 | 2417..791 | 8135 | 100 | Minus |
| X | 23542271 | X | 7283941..7284715 | 790..16 | 3875 | 100 | Minus |
| X | 23542271 | X | 7281442..7281749 | 3016..2709 | 1540 | 100 | Minus |
| X | 23542271 | X | 7282024..7282176 | 2570..2418 | 765 | 100 | Minus |
| X | 23542271 | X | 7281823..7281962 | 2708..2569 | 700 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..774 | 400..268 | 159 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6858 | 260..399 | 134 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2566..2644 | 321..399 | 124 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6866 | 339..447 | 119 | 57.8 | Plus |
BO22121.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:36 Download gff for
BO22121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1677-RA | 325..3324 | 17..3018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:56 Download gff for
BO22121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1677-RA | 327..3326 | 17..3018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:11 Download gff for
BO22121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1677-RA | 327..3326 | 17..3018 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:11 Download gff for
BO22121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7281439..7281749 | 2709..3018 | 99 | <- | Minus |
| X | 7281823..7281960 | 2571..2708 | 100 | <- | Minus |
| X | 7282024..7282176 | 2418..2570 | 100 | <- | Minus |
| X | 7282242..7283868 | 791..2417 | 100 | <- | Minus |
| X | 7283941..7284714 | 17..790 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:56 Download gff for
BO22121.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7176057..7176209 | 2418..2570 | 100 | <- | Minus |
| arm_X | 7175472..7175782 | 2709..3018 | 99 | <- | Minus |
| arm_X | 7175856..7175993 | 2571..2708 | 100 | <- | Minus |
| arm_X | 7176275..7177901 | 791..2417 | 100 | <- | Minus |
| arm_X | 7177974..7178747 | 17..790 | 100 | | Minus |
BO22121.pep Sequence
Translation from 16 to 3034
> BO22121.pep
MVLDMESDDSHASSASNSSESRSNSPTNDKDEVVADHGGESPGGGGDPIL
DRSDRAPSTSSSSSNSSSSSNRSDLSKKQKKSSSSSSGSGSGSGSSSSSG
SSSEDEGDQEPEQEVQRLSEQQREQQQHSPINERESESAAGTPVNADQPG
SPNAKSQPSSFLSSVRSRSVSPQLYNQAAVDLNISHDDLSDVSDIEGEEK
RTSSKNSMRPADENEDGAISNDSLPTLGEEDEVEQKQSTPNGKASSGDEK
EPFAKETHTDDASNGLAPATALQEDLVKTHDDDALDFEAEEGECPEQAKE
PSPMESTANETNQTKSTTKVSQDEGDDDGEVDKDGDDKDGDDKDTRKDGA
GNGCLEDGAGNDSRKDDAGNGCLEEGEEEKDIVSVSTSSSQEKVEEGELE
EGEVSDEDEKRPEETEPKPVCRFYTRGQCTWGMSCRFLHPGVTDKGNYTM
FDNVIRPVPMQGGSTGASAPAAPSSTAAPRAGGSAYSSHASATADYHDYR
TERPLHHRPPLLHAPSIYGAPVHDARTLLPDGAPVVVENAWERGLRTAKE
MMRKANKRKEQDMDFEDKKMNLTLSPDEMEKDSYYLKDRGGSSARSPPPP
SANVREQPLNPLSMPLSMHPHAVAHANPRALLPLQYSVYGPPPDRYGRPQ
YMPPQYDDVDAYGRMTRYRELPPHRMPHYEDDRRSRPTREVIVQRVEAAG
RGDEWSDPWMRSKSVGRGSYEREDRRRRDRRSYSSNSSYSTSNSSQSDSS
SDSSRSSSPSDHKRRYGSHKLATATATSRRHGGRAARSPSQIPRRPRRTS
KGSLSPSYKRPAVDKRGVGHSPSSKRKKLSSPAPKKFDKLRRRRSSSSSD
SDSSDTSYSDSESGSSSSDSSSGSRETPQKRVRATDKALNERKLISKPAE
QSTKKRSPISIEIKKTSNMVGVSALASASNSADSDAEKDHDNGKDKEKDH
VKEKDKDCKEKDKDKDGMKDKEGKKSRREELLKQLRAVEDAIAKKRSKLN
ASFLDH
BO22121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1677-PC | 1000 | CG1677-PC | 1..1000 | 1..1000 | 5179 | 100 | Plus |
| CG1677-PB | 1000 | CG1677-PB | 1..1000 | 1..1000 | 5179 | 100 | Plus |
| CG1677-PA | 1000 | CG1677-PA | 1..1000 | 1..1000 | 5179 | 100 | Plus |
| CG1677-PD | 999 | CG1677-PD | 1..999 | 1..1000 | 5163 | 99.9 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 320..1195 | 10..878 | 226 | 18.8 | Plus |
