BO22139.complete Sequence
3661 bp assembled on 2010-01-25
GenBank Submission: KX797263
> BO22139.complete
GAAGTTATCAGTCGACATGAACACACTGGGTCCTAAGAAGGACGGAAGTC
CGAATATAGACTTTTTCCAGTCGCCGGAGACGCTGCAGGGCTTTGAATCG
ATTCGCCAGTGGCTGCAGAAGAACTGCAAGAAGTATTTGGCCCACAGTTC
GGAGCCCATCACGAAGGAGTCCTTGGCCCAATTGCTCATTCACTTCCTGC
AGTATGTGGAAGCCAAGCTGGGCAAGAACTCAGCGGATCCGCCGGCAACC
AGAATTCCGATGCGTTGCTTTCTGGACTTCAAGAGCGGCGGTGGTCTGTG
CATCATTTTCTCGACCATGTTCCGTTTCCGGGCCGAGCAACGCGGCAAGA
AGTTCGACTTCTCCATTGGCAAGAATCCCACGCGCAAGGATCCCAACATC
CAGCTGCTGATCGAGATTGAGCAGGCGTTGGTCGAGGCGGACTTGTATCG
CATACCGTACATCTATATTCGGCCGGAGATTGAAAAGGGCTTCGAGGGAA
AACTGCGCGAGATCCTGGACAATCGACGGGTAGAGATTGTGTCGGACGAG
GAGGACGCCACCCATATCGTCTATCCTGTGGTGGACCCACATCCCGACGA
GTATGCGCGGCCCATTTTCAAGCGCGGCGGACATGTGATGCTGCATTGGT
ACTACTTCCCCGAGTCCTACGATTCTTGGGCTGTGAATAACTTTGACCTG
CCCGATCACATTCCGGAGAATCCCGAGTCACCGGCGGAACGTTGGCGTGT
GTCTGCATCCTGGATCGTGGACCTGGAGCAGTACAATGAGTGGATGGCCG
AGGAGGACTACGAGGTTGACGAACAGGGCAAGAAGAAGACGCACAAACAG
CGTATGTCCATAGACGACATCATGTCATTCGGCGACGAGAAGAAGAAGCC
TGCTGCCAGCTCGGGCGGAGGCAAGCAGAAGAGACGCCGTTCACCATCTC
CCGCCAGTTCGGCATCCACCTCAAAGCCGGGCAAGCGTAAGCGTTCTCCC
GCCGTGGTGCACAAAAAGTCGCGCAACGACGATGATGACGAGGACTTAAC
TCGCGATCTGGATGATCCGCCGGCCGAGCCCAATGTTCAGGAGGTTCATA
AGGCAAATGCCGCCTTGCAGTCCACCGCCAGTCCAGCTCCGGGCGGTAAA
TCTCGTGGCGACAACGACATGATGCCCATTAAAGGTGGCACTATGACCGA
TCTGGATGACGAAATGACTGGAGGAAGCGCCGCTCAAGCCATGTCTACCG
GAGATGGGGAAAACTCGCAGACAGGCAAGACAAGTGATAACAGCAACACG
CAGGAATTCTCTTCATCGGCCAAAGAGGATATGGAGGACAATGTGACCGA
GCAGACGCACCACATTATCGTGCCTTCGTACTCGGCTTGGTTTGATTACA
ACTCCATTCATGTGATCGAGAAACGGGCCATGCCGGAATTCTTTAACAGC
AAGAATAAGTCAAAGACACCAGAAATCTATATGGCCTACAGGAATTTTAT
GATTGATACGTACAGGCTCAATCCGACGGAGTATTTGACCAGCACAGCTT
GTAGGCGTAATCTTGCCGGAGATGTGTGCGCCATAATGCGAGTACACGCC
TTCTTGGAGCAATGGGGCCTGATTAACTACCAGATCGATGCGGATGTCCG
CCCCACCCCTATGGGTCCACCACCAACCTCACACTTTCACATTCTTTCGG
ATACGCCATCAGGTCTACAGTCCATAAATCCGCAAAAGACGCAACAGCCG
TCGGCGGCAAAGACGCTGTTGGATCTGGACAAAAAGCCATTGGGTAAAGA
TGGCGGCCTGGAGTTGGGCGATAAAAGTGGTCTGACTGGCATCAAGACAG
AGGCTCTAGAGAATGGCGCTGCCGGAGGATTAAGTTCCGGAGTGAGCCAG
TTTGGACTCAAGCTGGATCAGTACGCAAAGAAGCCGGCGGCCATGAGGAA
TCGAACGGCGGCAAGCATGGCTCGTGAATGGACCGATCAGGAGACTCTGC
TGTTGCTTGAGGGCTTGGAAATGCACAAGGACGACTGGAACAAGGTCTGC
GAGCACGTTGGATCTCGCACTCAAGACGAGTGCATTCTGCATTTCCTTCG
ACTTCCCATCGAGGACCCGTATCTAGAGGATGATGGTGGCTTCCTGGGCC
CCTTGGCCTGCCAACCCATTCCGTTCAGCAAGAGTGGCAATCCCATTATG
TCCACCGTCGCATTCCTGGCATCTGTGGTCGATCCTCGCGTTGCCGCTGC
AGCAGCAAAGGCTGCCATGGAGGAATTTGCAGCCATTAAGGATGAGGTGC
CCGCTACAATAATGGACAACCACCTGAAAAACGTGGAGAAGGCTTCGGCA
GGTGGTAAATTTAATCCGAACTTTGGGCTGGCCAATAGTGGAATCGCAGG
AACCGGAAACGACAAGGACGATGAAGAGGGCAAGGAGGGTGGCGCATCTG
CATCCGCTGGCGGCTCTGATGAGGAAATGAAGGACCTAAGCAAAAAAGAC
GACGATGCCAAGTCCAAAGACAATACAAAATCGGATAAGACCAACACAAA
CACAGACTCGAGTTCCACATCATCATCAGCGACAGGCAACACCAACAACA
CTGACAAGAAACCAAAGGAGTCGTCCGGCTCCTCGCCTTCGGGCGATAAG
TCAGCCATCAAGTCAGACAAATCAAACAAATCCTCACCCACAGAAACCGC
AGCAGCCGCAAGTGGTGGCGAAGTGGACATCAAGACGGAGGACAGCAGTG
GCGATGGCGAAACTAAGGACGGCACTGAGGCCAAAGAGGGAACGGGAACC
GGAACAGGGCCATTGGCGGTGCCAAAGGAAGGAACATTTAGCGAAAATAA
CATGCAGACTGCGGCGGCGGCAGCTTTGGCATCGGCAGCAGTTAAAGCCA
AACACCTGGCTGCCCTGGAGGAGCGTAAGATCAAATCCCTGGTGGCTCTC
CTTGTTGAGACTCAGATGAAGAAGCTGGAGATCAAATTGCGCCACTTTGA
GGAACTGGAGGCCACCATGGAGCGAGAGCGCGAGGGATTGGAGTACCAGC
GTCAGCAGCTGATCACAGAGCGTCAGCAATTCCACCTGGAGCAGCTAAAG
GCAGCCGAGTTCCGAGCGCGCCAACAAGCACATCATCGTCTTCAGCAAGA
GCTCCAAGGCCAGGCGGCCGCGGGATCAATGATCTTGCCGCAGCAACAGC
AGCTACCACAGGCCCAGCAGCCGCAGCAGCAACAGCAAACGCTGCCACCT
CATCCGCACCTGGCGCAGCAGCAACAGCTGCCTCCGCATCCGCACCAGTT
GCCGCCGCAGTCCCAACCGCTAGCGGGTCCCACCGCCCAGCACCAGCCGT
TGCCCCCGCACGTAGTGTCGTCGCCCAACGGTGCTCCCTTTGCAGCGCCA
CCGATTTCGCTCACGGGAGGACTCCCGCCGGGCGCACCCACGGCCATTGT
CACGAATCCGAGCGACCAAACCGGACCAGTCGCAGCGGGAGCAGCGCAAT
CTCAAGCACCTACACCCATGGATACTACACCACCAAGCAGCGGTCCAGTG
TCAGATGCCAACGCACCGCCGGGATCGGCAATGCCACCAGGGGGAATTCC
TCCGGCGAACACTGCTCCCATCGCCGGCGTAGCTCCCTCTTCTGCAAGCT
TTCTAGACCAT
BO22139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mor-RA | 3630 | CG18740-PA | 1..3627 | 17..3643 | 18135 | 100 | Plus |
| mor-RB | 3438 | CG18740-PB | 1..2486 | 17..2502 | 12430 | 100 | Plus |
| mor-RB | 3438 | CG18740-PB | 2485..3435 | 2693..3643 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mor-RA | 3983 | CG18740-RA | 100..3728 | 15..3643 | 18145 | 100 | Plus |
| mor-RB | 3791 | CG18740-RB | 100..2587 | 15..2502 | 12440 | 100 | Plus |
| mor-RB | 3791 | CG18740-RB | 2586..3536 | 2693..3643 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15968575..15969595 | 3521..2501 | 5105 | 100 | Minus |
| 3R | 32079331 | 3R | 15971372..15972299 | 1186..259 | 4640 | 100 | Minus |
| 3R | 32079331 | 3R | 15970154..15970932 | 2291..1513 | 3895 | 100 | Minus |
| 3R | 32079331 | 3R | 15970992..15971325 | 1516..1183 | 1670 | 100 | Minus |
| 3R | 32079331 | 3R | 15969882..15970094 | 2501..2289 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 15972479..15972606 | 259..132 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 15968389..15968516 | 3643..3516 | 625 | 99.2 | Minus |
| 3R | 32079331 | 3R | 15972696..15972814 | 133..15 | 595 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6912 | 3188..3360 | 256 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6678..6885 | 3141..3360 | 251 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6957 | 3124..3354 | 234 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2442 | 3188..3308 | 229 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6857 | 3209..3347 | 228 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2516 | 3090..3322 | 223 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2534 | 3070..3298 | 217 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6957 | 3074..3303 | 203 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6858 | 3224..3360 | 180 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2412 | 3206..3320 | 169 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1056..1142 | 3183..3281 | 162 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2410..2655 | 3042..3281 | 145 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2856 | 3188..3275 | 136 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2585..2856 | 3052..3317 | 129 | 53.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6793 | 3251..3322 | 126 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6813 | 3266..3360 | 125 | 62.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1148 | 3224..3317 | 124 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2381 | 3251..3322 | 117 | 62.5 | Plus |
BO22139.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:34 Download gff for
BO22139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mor-RA | 98..3724 | 17..3645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:41 Download gff for
BO22139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mor-RA | 103..3729 | 17..3645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:00 Download gff for
BO22139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mor-RA | 102..3728 | 17..3645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:00 Download gff for
BO22139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15968387..15968510 | 3522..3645 | 98 | <- | Minus |
| 3R | 15968575..15969594 | 2502..3521 | 100 | <- | Minus |
| 3R | 15969882..15970092 | 2291..2501 | 100 | <- | Minus |
| 3R | 15970155..15970929 | 1516..2290 | 100 | <- | Minus |
| 3R | 15970993..15971323 | 1185..1515 | 100 | <- | Minus |
| 3R | 15971374..15972298 | 260..1184 | 100 | <- | Minus |
| 3R | 15972479..15972604 | 134..259 | 100 | <- | Minus |
| 3R | 15972696..15972812 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:41 Download gff for
BO22139.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11794109..11794232 | 3522..3645 | 98 | <- | Minus |
| arm_3R | 11794297..11795316 | 2502..3521 | 100 | <- | Minus |
| arm_3R | 11795604..11795814 | 2291..2501 | 100 | <- | Minus |
| arm_3R | 11795877..11796651 | 1516..2290 | 100 | <- | Minus |
| arm_3R | 11796715..11797045 | 1185..1515 | 100 | <- | Minus |
| arm_3R | 11797096..11798020 | 260..1184 | 100 | <- | Minus |
| arm_3R | 11798201..11798326 | 134..259 | 100 | <- | Minus |
| arm_3R | 11798418..11798534 | 17..133 | 100 | | Minus |
BO22139.pep Sequence
Translation from 16 to 3661
> BO22139.pep
MNTLGPKKDGSPNIDFFQSPETLQGFESIRQWLQKNCKKYLAHSSEPITK
ESLAQLLIHFLQYVEAKLGKNSADPPATRIPMRCFLDFKSGGGLCIIFST
MFRFRAEQRGKKFDFSIGKNPTRKDPNIQLLIEIEQALVEADLYRIPYIY
IRPEIEKGFEGKLREILDNRRVEIVSDEEDATHIVYPVVDPHPDEYARPI
FKRGGHVMLHWYYFPESYDSWAVNNFDLPDHIPENPESPAERWRVSASWI
VDLEQYNEWMAEEDYEVDEQGKKKTHKQRMSIDDIMSFGDEKKKPAASSG
GGKQKRRRSPSPASSASTSKPGKRKRSPAVVHKKSRNDDDDEDLTRDLDD
PPAEPNVQEVHKANAALQSTASPAPGGKSRGDNDMMPIKGGTMTDLDDEM
TGGSAAQAMSTGDGENSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHI
IVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYR
LNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADVRPTPMG
PPPTSHFHILSDTPSGLQSINPQKTQQPSAAKTLLDLDKKPLGKDGGLEL
GDKSGLTGIKTEALENGAAGGLSSGVSQFGLKLDQYAKKPAAMRNRTAAS
MAREWTDQETLLLLEGLEMHKDDWNKVCEHVGSRTQDECILHFLRLPIED
PYLEDDGGFLGPLACQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAA
MEEFAAIKDEVPATIMDNHLKNVEKASAGGKFNPNFGLANSGIAGTGNDK
DDEEGKEGGASASAGGSDEEMKDLSKKDDDAKSKDNTKSDKTNTNTDSSS
TSSSATGNTNNTDKKPKESSGSSPSGDKSAIKSDKSNKSSPTETAAAASG
GEVDIKTEDSSGDGETKDGTEAKEGTGTGTGPLAVPKEGTFSENNMQTAA
AAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELEAT
MEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQELQGQA
AAGSMILPQQQQLPQAQQPQQQQQTLPPHPHLAQQQQLPPHPHQLPPQSQ
PLAGPTAQHQPLPPHVVSSPNGAPFAAPPISLTGGLPPGAPTAIVTNPSD
QTGPVAAGAAQSQAPTPMDTTPPSSGPVSDANAPPGSAMPPGGIPPANTA
PIAGVAPSSASFLDH
BO22139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mor-PA | 1209 | CG18740-PA | 1..1209 | 1..1209 | 6324 | 100 | Plus |
| mor-PB | 1145 | CG18740-PB | 1..1145 | 1..1209 | 5629 | 90.6 | Plus |
| Ncoa6-PC | 2265 | CG14023-PC | 940..1244 | 784..1111 | 168 | 22.7 | Plus |
| Ncoa6-PD | 2266 | CG14023-PD | 941..1245 | 784..1111 | 168 | 22.7 | Plus |
| Ncoa6-PF | 2467 | CG14023-PF | 941..1245 | 784..1111 | 168 | 22.7 | Plus |
