BO22140.complete Sequence
3673 bp assembled on 2010-02-01
GenBank Submission: KX796531
> BO22140.complete
GAAGTTATCAGTCGACATGAGCCTGAATCAGCACAGTGGACCCGGCCCGC
CGTCGGAGATCTGCGGATTATCGGTGGACCAGGTGGACTCATCGGCCGCC
TCCCCTTTCATCTGGCCGAGCACAGCGGGTATGTGCACCACCGCCACCAC
CGTCACAACATCGACCAATGGAGACGCCACCGCGGAAGCACCAGTGAAAC
ATCAGCCGCTCCACAACGGCGGCTGGATCGGAAATGGTCTTCCGCCGGCG
CCCGTGACGCGGACCATATCATCGGATCGCCTGGTCACCGGCAGCTCGTG
TCGGGCGCTGCGCACTGCCGTCTCAGCATTATACTCCGTGGATGACTTCG
TCAAGGAGAAAATTGGATCGGGATTCTTCTCGGAGGTTTACAAGGTCACA
CATCGTACAACCGGCCAGGTGATGGTGCTCAAGATGAATCAGTTGCGGGC
CAATCGACCGAATATGCTGCGGGAGGTGCAGCTGTTGAATAAACTTTCGC
ATGCGAATATATTGAGCTTCATGGGCGTTTGCGTGCAGGAGGGCCAACTG
CACGCCCTGACCGAGTACATCAACGGCGGCTCCCTGGAGCAGCTGCTGGC
CAACAAGGAGGTGGTGCTCAGCGCCACGCAGAAGATAAGACTGGCGCTGG
GTATAGCGCGCGGCATGTCCTACGTTCACGACGCGGGCATCTTTCACAGG
GATCTGACGAGCAAGAATGTACTTATTCGCAATCTGGCCAACGATCAGTA
CGAAGCTGTAGTGGGTGACTTTGGTCTAGCCGCAAAGATACCAGTCAAAT
CCAGAAAATCACGCCTTGAGACAGTCGGCTCACCGTATTGGGTCAGTCCG
GAGTGCCTGAAGGGCCAGTGGTACGATCAGACAAGCGATGTCTTCTCCTT
TGGCATCATTCAATGCGAGATCATAGCCCGCATCGAAGCGGACCCGGATA
TGATGCCGCGCACGGCGTCGTTTGGACTGGACTACCTGGCATTTGTAGAA
TTGTGTCCGATGGACACTCCTCCTGTGTTTTTACGTCTGGCCTTCTACTG
CTGTCTGTACGATGCCAAGAGCCGACCCACGTTCCACGATGCCACCAAAA
AGTTGACTTTGCTGCTGGAGAAATACGAGCACGAGTCGTCGGCCGGAGCA
AGTCCACTCAGTTCCCTGGAGTTGATCAACTGCTCACCAGGAGGCAGCGA
TTCGGAGAACGTAACGTTGACACCCCGAGCATCAGTACCCACGGTGGCCA
CTATTTGTACTGCTCCTGCTGGCACTTTAACACCGCGCCATCTACAGGAA
GTGGACGAGGACGGCTTCCGATTTCCAAGTAAAAAGTCTGCTTCGGCTGC
GCTTCCGGGCACGCCAAATGGATCTGCTGGAAGCAGTGGCTTTGATGATC
ATATACTGAAGTCTAGAGTGCGACGGGCTACTCAGAAGTTGGAGGCCGAG
ATCTTGTTGCACCGGCGTTCGCTAAGCGAGAACATCATCCACTTCCCCAT
GCACACGTCGCCAAGTGACAAGGCGCGGTGTCATCAGATGCAGCGACAGC
GCTCCTCAACACACTCACCAACGCCCCCAAGGCAGCTTTCCTCGGTTCAG
TTGCCCGCCACGTCTATTCCAGATCCCCCACCGCTTCCCAAGCCCGTTCC
AGCGGTACTCACACTGCGCAAAGTGGGCGATCCACAGTACAAGCCGACAT
CTGAAAAGGATCACAACGGCTCTAAACCCAATCCGTTTGAAGCGCTGGCG
CAACTGCGTGGTGTCAAGAAAATCCTGGACGCCAATCCGAAAACCTATGC
AGCAGGGGTGGGAGATCTATTCAGCTCATGCTTCGAGATGCTAGCGCCGT
TCTTCAAAGAACTGGCCGCAATGCAGAGCAAAGCGGGGGCTCAGGGCGGA
GGAACGAGTACGGAGGAAACATCAACGGGTAACAAGGCTTCGGCAGCAAC
GCCCAGTGAACCAAAGAGCCTGCCAGTGTCGCCGCATATGACGCGCAAAT
ACAGCGCCATCGAGCTTCGACTTCCTCAGCGAATCAGCAATGCTGCTCCT
CCAGCAGTTACCAGTGCTCCACCACCATCAATAGCATTGCCAACCGATGA
GGATGACTGCGATGATTGCAATTCGGAAGGTGAGGATCCCGATGGCGGTG
GCAACTGTGCAGATGCGGAATCAAGCAGCGATGACAGCGCCGTGCGTCCG
TCCACTGTGCCAACCGCTCGAAAATACCGCGCGAATTCCTTGTATGCGCA
TCCGCTTTTTCGCGGCTCCAATGGCACCAGCATGAAAAGTACCAGTACTG
GTGAATTCGAGAGTCCAACTCTACTGAAGGCCAGCGCATCTACAATCACG
TTGACTGCGTCAGTGGGTGCGACCAATTCGTGTGAGGATCTGACTGAAAG
CGCCAGAAAATCAAAAGAGCAAGCGAGTAGCGGTGCAACAGCGGCGGTGC
AGGCTTTGCCCACTCCCATGTCTGGCTGCTCCACCAGGTTGGTGGAAACC
CCGGTGTCCGTTTCATCCTGCACTGATCTTGAGCTCGACGAACTGAAAAA
CACCTGCGATCTGAACGAATTGAAGAACTCGTGTGAGCAGCTTCCCTTGA
AGACAAACCTAACGAGGCGGGACTCTATAGAAAGTGGCTTCTTCTCGTGC
TTTAACGAAGAGTCCGATGCGGCGATAACCAACAACAGTTTCGGACGGCA
GCTGAACGGGATTGGATCGTTGGGGTTTGGTTGCGGCGGCGGGGGCAACA
GTAGCAACTGCTGCTATGAGAAATTGAAGACGCAGCTTATGCTCGATGCA
TGCGTCAGCGCAGATAGTGAAATCAACGATAAACTGGCGAGTTTGTGTCG
CTGCTGCTACTACGCCACCTCGACATCGAATGCCGCCGTAACTGCAGCCG
CTGCTGCGGCCCAGCAACAACAGCAGAGCCACTTGCTCAACGATACGTCC
TCGACCTCATCGTCGGTGCTGCTGATCGACAATGATCCCGCTGTGATCGG
TGGAAATACCTCATCATCCACAGCGTTGGACTCGATGGATGACTTGGACG
CGGACATTGTGGCATCGCGGCGCACACACCAGCGACGATACACTTGCCAC
CATGCGTTGCTCAGCGGGAATGGCAGCGAATCCCAAATGGCGGCTACGGC
GAGCCTGATCAATCGTCTGGCTTTAGACTCGGAGATACATACTCTGCTTC
AGCGTAGTCCTTTTGCAACGAATCAACTATTGTACTGTAAGAACCGCACC
TCGTCCATATACACGGATAGCTCCGATGATATAAGTAGCTTGGCCGGCTC
TGACTCCCTGCTCTGGGACGACCGCTCCTTCACGGCACTGCCCAGTACAA
GATCCGCACAGATTGCCAAGATAGTGGAGTATTTTGAGCGAAAGCGACAG
GACTCCTCGCCGCCTTCGGTGCACCATCGCAATGGGAACGGGACGGTAGC
AGCTGCTGTGGCTGCCTCTGCCCTGGGTTCCAACTACCTTTCGTACGAGT
CGCGTCGCTATTCGGACTTCAAGCGGCACCTGAACGCGGATGGCCTGTGC
TTCGATCTGGACAAGAAGCCGGCGCAGCAAAGGATGATGGTGTGCGAGGG
TGCGGTCAAGTCGAAGCTTCCCATATTCGATAAAAAGAAGCAACAGCAAG
GCGGCGCAAGCTTTCTAGACCAT
BO22140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdi-RA | 3642 | CG6027-PA | 1..3639 | 17..3655 | 18195 | 100 | Plus |
| cdi-RB | 2829 | CG6027-PB | 1..2807 | 17..2826 | 13970 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdi-RA | 5665 | CG6027-RA | 1099..4739 | 15..3655 | 18205 | 100 | Plus |
| cdi-RB | 6523 | CG6027-RB | 1099..3907 | 15..2826 | 13980 | 99.9 | Plus |
| cdi-RB | 6523 | CG6027-RB | 3957..4785 | 2827..3655 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19047988..19049757 | 2826..1057 | 8850 | 100 | Minus |
| 3R | 32079331 | 3R | 19046620..19047448 | 3655..2827 | 4145 | 100 | Minus |
| 3R | 32079331 | 3R | 19087403..19087784 | 396..15 | 1910 | 100 | Minus |
| 3R | 32079331 | 3R | 19049817..19050072 | 1057..802 | 1280 | 100 | Minus |
| 3R | 32079331 | 3R | 19050291..19050491 | 715..515 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 19060713..19060836 | 516..393 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 19050146..19050233 | 801..714 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:07:51 has no hits.
BO22140.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:03:56 Download gff for
BO22140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1185..4823 | 17..3657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:48 Download gff for
BO22140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1185..4823 | 17..3657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:10 Download gff for
BO22140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cdi-RA | 1101..4739 | 17..3657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:10 Download gff for
BO22140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19046616..19047448 | 2827..3657 | 99 | <- | Minus |
| 3R | 19047988..19049756 | 1058..2826 | 100 | <- | Minus |
| 3R | 19049817..19050072 | 802..1057 | 100 | <- | Minus |
| 3R | 19050146..19050231 | 716..801 | 100 | <- | Minus |
| 3R | 19050291..19050489 | 517..715 | 100 | <- | Minus |
| 3R | 19060713..19060834 | 395..516 | 100 | <- | Minus |
| 3R | 19087405..19087782 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:48 Download gff for
BO22140.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14872338..14873170 | 2827..3657 | 99 | <- | Minus |
| arm_3R | 14873710..14875478 | 1058..2826 | 100 | <- | Minus |
| arm_3R | 14875539..14875794 | 802..1057 | 100 | <- | Minus |
| arm_3R | 14875868..14875953 | 716..801 | 100 | <- | Minus |
| arm_3R | 14876013..14876211 | 517..715 | 100 | <- | Minus |
| arm_3R | 14886435..14886556 | 395..516 | 100 | <- | Minus |
| arm_3R | 14913127..14913504 | 17..394 | 100 | | Minus |
BO22140.pep Sequence
Translation from 16 to 3673
> BO22140.pep
MSLNQHSGPGPPSEICGLSVDQVDSSAASPFIWPSTAGMCTTATTVTTST
NGDATAEAPVKHQPLHNGGWIGNGLPPAPVTRTISSDRLVTGSSCRALRT
AVSALYSVDDFVKEKIGSGFFSEVYKVTHRTTGQVMVLKMNQLRANRPNM
LREVQLLNKLSHANILSFMGVCVQEGQLHALTEYINGGSLEQLLANKEVV
LSATQKIRLALGIARGMSYVHDAGIFHRDLTSKNVLIRNLANDQYEAVVG
DFGLAAKIPVKSRKSRLETVGSPYWVSPECLKGQWYDQTSDVFSFGIIQC
EIIARIEADPDMMPRTASFGLDYLAFVELCPMDTPPVFLRLAFYCCLYDA
KSRPTFHDATKKLTLLLEKYEHESSAGASPLSSLELINCSPGGSDSENVT
LTPRASVPTVATICTAPAGTLTPRHLQEVDEDGFRFPSKKSASAALPGTP
NGSAGSSGFDDHILKSRVRRATQKLEAEILLHRRSLSENIIHFPMHTSPS
DKARCHQMQRQRSSTHSPTPPRQLSSVQLPATSIPDPPPLPKPVPAVLTL
RKVGDPQYKPTSEKDHNGSKPNPFEALAQLRGVKKILDANPKTYAAGVGD
LFSSCFEMLAPFFKELAAMQSKAGAQGGGTSTEETSTGNKASAATPSEPK
SLPVSPHMTRKYSAIELRLPQRISNAAPPAVTSAPPPSIALPTDEDDCDD
CNSEGEDPDGGGNCADAESSSDDSAVRPSTVPTARKYRANSLYAHPLFRG
SNGTSMKSTSTGEFESPTLLKASASTITLTASVGATNSCEDLTESARKSK
EQASSGATAAVQALPTPMSGCSTRLVETPVSVSSCTDLELDELKNTCDLN
ELKNSCEQLPLKTNLTRRDSIESGFFSCFNEESDAAITNNSFGRQLNGIG
SLGFGCGGGGNSSNCCYEKLKTQLMLDACVSADSEINDKLASLCRCCYYA
TSTSNAAVTAAAAAAQQQQQSHLLNDTSSTSSSVLLIDNDPAVIGGNTSS
STALDSMDDLDADIVASRRTHQRRYTCHHALLSGNGSESQMAATASLINR
LALDSEIHTLLQRSPFATNQLLYCKNRTSSIYTDSSDDISSLAGSDSLLW
DDRSFTALPSTRSAQIAKIVEYFERKRQDSSPPSVHHRNGNGTVAAAVAA
SALGSNYLSYESRRYSDFKRHLNADGLCFDLDKKPAQQRMMVCEGAVKSK
LPIFDKKKQQQGGASFLDH
BO22140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cdi-PA | 1213 | CG6027-PA | 1..1213 | 1..1213 | 6266 | 100 | Plus |
| cdi-PB | 942 | CG6027-PB | 1..942 | 1..943 | 4842 | 99.3 | Plus |
| LIMK1-PF | 1043 | CG1848-PF | 171..465 | 94..356 | 528 | 39 | Plus |
| LIMK1-PD | 1052 | CG1848-PD | 180..474 | 94..356 | 528 | 39 | Plus |
| LIMK1-PE | 1235 | CG1848-PE | 363..657 | 94..356 | 528 | 39 | Plus |
