BO22144.complete Sequence
3748 bp assembled on 2010-01-25
GenBank Submission: KX800079
> BO22144.complete
GAAGTTATCAGTCGACATGACCGAAGAGGACGATGATGTGGCCCAAAGGG
TGGCGACGGCGCCCGTCCGCAAGCCGGACGACGAGACGGCCTTCCTGGAG
TACATCGAAATGGAGAACTTCAAGTCCTACCGCGGTCACATAGTTGTGGG
TCCTCTGAAGCAATTCAACGCTGTTATTGGGCCCAACGGATCAGGCAAGT
CAAACTTCATGGATGCCATCAGTTTCGTGATGGGCGAGAAGACCAGCAGT
TTGCGAGTAAAGCGCCTGAACGACCTCATCCATGGCTCCTCCATTGGCAA
GCCCGTTTCCCGCAGTTGCTACGTGACCGCCAAATTTGTGCTGAACGAGG
AGCGCCACATGGACTTCCAGAGGGCTGTTATCGGCGGCTCCTCGGAATAT
CGTATCAATGGAGAGAGCGTATCGAGCAGCACCTACTTGAACAAGCTGGA
GAAAATTGGCATCAATGTTAAGGCCAAGAACTTTTTAGTATTCCAGGGAG
CTGTTGAGAACATAGCCATGAAGACACCCAAGGAACGCACTGCTCTATTT
GAGGAAATAAGCGGTTCTGGTCTGCTTAAGGACGACTATAATCGCCTTAA
ACAAGAAATGATTGTTGCCGAGGAGGAGACCCAGTTTACTTACCAAAAGA
AGAAGGGCATCGCGGCGGAACGAAAAGAGGCCAAGCACGAGAAGATGGAA
GCTGATCGCTACACTCGCCTGCAAAACGAATACAATGAAAAACAAGTGGA
GTATCAATTATTTAGGCTATTCCACGTGGAGAGGGACATCCGGAAGTTTA
CGAGCGATTTGGAGGTGAGGCAACAGGAAGTAAAAGCAGTCGAACAGCGG
AAAGAAGCTGCCGATGAAATCTTGCGCGAAAAGAAGAAAGACGCCGGAAA
AATCACCCGAGACCTGGCCAAAATCGATCAGGAAATCAGAGAGTTTGAAA
CCCAGATGAACAAACGCAGGCCCCTTTACATCAAGGCCAAAGAGAAAGTT
ACCCACTGCAAGAAGAAGCTCATTTCCCTACAGAAGACTCTGGAAACAGC
CAGGGAGGCGGACAATGCCCATCAGTCGGACATACGGAAACTGGAGAAGC
AGCTGGCTGATGTGGAGGCCCTGAAAAAACGTTTCGAGGACGAGATCGAG
AACGAGTCGCAGCGCCGCGGCAAAAGCGTTAACATGGAAGAGGGCCTTGT
GCAAGAGTACGATCGCCTGAAGCAGGAGGCGGAAGCCACAGCTACGCAGT
ACCGTTCAGAGCTGGACTCAGTAAACCGGGAGCAAAAATCCGAACAGGAC
ACGCTTGATGGGGAGACAAATCGTCGCGCCTCCGTAGAGGAGTCCTTCAA
GAAGCTCACATTACAGCGCGAGGAAGCTGTAAAGCGTCGAGACAAACTGA
TGGATCACATCAAATCATCACAGGCTGCCTTGGAGGAACAGAACCGGATC
AAGGACGAGCTCCGGCGAGATGTTGGCACATCCAAGGAGAAGATAGCCGA
AAAGCAACGCGAATTGGAGGACGTACGCGATCAACTGGGCGATGCCAAGA
GCGACAAGCACGAGGATGCTCGTAGGAAAAAGAAGCAGGAGGTGGTGGAG
CTCTTCAAAAAACAGGTTCCCGGAGTGTACGACCGTATGATTAACATGTG
TCAGCCGACGCATAAACGCTACAATGTGGCCGTCACCAAAGTTTTGGGAA
AGTTCATGGAAGCCATTATTGTGGACACCGAGAAGACGGCTAGACACTGT
ATTCAGATCTTGAAGGAGCAAATGCTGGAAGTGGAAACCTTCTTGCCCTT
GGACTATCTGCAAGTTAAGCCTCTGAAGGAACGACTTCGTAACATCAGCG
ACCCGCGGAACGTGCGATTGGTTTTCGATGTACTAAAGTTTGAGCCTCAA
GAGATCGAACGGGCTGTGCTCTTCGCCACAGGCAATGCTCTCGTTTGTGA
GACTCCCGAGGACGCCATGAAAGTGGCCTACGAGATAGACCGATCACGTT
TCGACGCTCTGGCCCTGGACGGAACATTCTACCAGAAATCGGGTCTCATA
TCTGGCGGTAGTCACGATCTGGCTCGCAAAGCTAAGCGATGGGACGAGAA
GCACATGGCTCAGCTGAAAATGCAGAAGGAGCGCCTCCAAGAAGAGCTCA
AGGAGCTGGTGAAAAAGTCACGTAAGCAGAGTGAGCTCGCCACTGTGGAG
TCGCAGATCAAGGGTCTTGAAAACAGGCTTAAATATAGTATGGTTGATTT
GGAGTCCTCCAAGAAGTCAATTAGTCAGTATGACAATCAGTTGCAGCAAG
TCCAATCGCAGTTGGACGAATTTGGACCCAAGATCCTTGAGATAGAGCGT
CGTATGCAAAACCGCGAGGAGCACATCCAGGAAATCAAAGAAAACATGAA
CAATGTGGAGGACAAAGTATATGCCTCTTTCTGCCGTCGCTTGGGCGTGA
AGAACATACGACAATACGAGGAGCGTGAGCTCGTCATGCAGCAAGAGCGA
GCGCGTAAACGGGCTGAGTTTGAGCAGCAGATTGATTCCATAAACTCGCA
GCTGGACTTCGAGAAACAGAAAGACACTAAAAAAAACGTTGAGCGCTGGG
AGCGCAGCGTGCAGGATGAGGAAGATGCCCTAGAGGGACTCAAATTGGCT
GAGGCACGCTATTTAAAGGAAATCGACGAGGATAAGGAGAAAATGGAAAA
ATTCAAGCAGGACAAGCAGGCCAAGAAGCAAGCCGTGGATGACATGGAAG
AGGACATATCTAAAGCCCGCAAGGATGTGGCAAATTTGGCTAAGGAAATC
CATAACGTGGGCAGTCATTTATCTGCGGTAGAGTCTAAGATCGAGGCCAA
GAAAAACGAACGTCAGAACATACTGTTGCAAGCAAAAACCGATTGCATCG
TGGTACCACTGTTGCGCGGCTCGCTGGACGACGCAGTGCGACAAAGCGAT
CCGGATGTCCCATCCACCTCTGCAGCGATGGAAAATATTATTGAAGTGGA
TTATTCATCTCTACCACGAGAGTATACCAAGCTGAAGGATGACTCCGCTT
TCAAAAAGACCCACGAAATGCTTCAAAAGGACCTGCAAAGCAAGCTGGAC
GTTTTGGAGCGCATACAGACGCCCAACATGAAAGCACTGCAGAAACTCGA
TGCTGTAACGGAAAAAGTGCAATCCACCAATGAGGAGTTTGAGAATGCGC
GCAAGAAAGCAAAGAGGGCCAAGGCGGCATTTGAACGGGTTAAGAACGAA
CGCTCCTCGCGCTTCGTTGCGTGTTGCCAGCACATATCGGATGCCATTGA
CGGTATCTACAAGAAATTGGCTCGCAACGAGGCAGCCCAGGCTTATATCG
GTCCCGACAATCCTGAGGAACCATATCTAGATGGTATTAACTATAATTGT
GTGGCGCCAGGCAAACGTTTCCAACCCATGAACAACTTGAGTGGTGGCGA
AAAAACAATAGCAGCCTTGGCTCTGCTCTTCTCGACCCACAGCTTTCATC
CAGCGCCTTTCTTTGTCCTTGACGAGATTGATGCCGCCTTGGACAACACG
AATATTGGCAAAGTCGCTTCGTATATAAGGGATCACACAACCAACCTGCA
AACCATCGTCATTTCCCTGAAGGAAGAGTTCTATGGTCATGCTGATGCTC
TTGTGGGCATTACGCCTGGGGAAGGCGACTGTCTCGTATCAAATGTTTAC
ATAATGGACTTGACAACGTTCGAGGACACGGCAAGCTTTCTAGACCAT
BO22144.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC1-RA | 3717 | CG6057-PA | 1..3714 | 17..3730 | 18090 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC1-RA | 3924 | CG6057-RA | 115..3828 | 17..3730 | 18090 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24059284..24060311 | 729..1756 | 5035 | 99.3 | Plus |
| 3R | 32079331 | 3R | 24060373..24060944 | 1755..2326 | 2785 | 99.1 | Plus |
| 3R | 32079331 | 3R | 24061857..24062360 | 2989..3492 | 2430 | 98.8 | Plus |
| 3R | 32079331 | 3R | 24058401..24058799 | 17..415 | 1965 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24061323..24061627 | 2583..2887 | 1480 | 99 | Plus |
| 3R | 32079331 | 3R | 24061011..24061266 | 2327..2582 | 1250 | 99.2 | Plus |
| 3R | 32079331 | 3R | 24062418..24062599 | 3490..3671 | 895 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24059061..24059230 | 564..733 | 775 | 97.1 | Plus |
| 3R | 32079331 | 3R | 24058853..24059003 | 414..564 | 725 | 98.7 | Plus |
| 3R | 32079331 | 3R | 24061691..24061791 | 2888..2988 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 24062659..24062719 | 3670..3730 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:19 has no hits.
BO22144.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:35 Download gff for
BO22144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 100..3813 | 17..3732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:47 Download gff for
BO22144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 115..3828 | 17..3732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:03 Download gff for
BO22144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMC1-RA | 115..3828 | 17..3732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:03 Download gff for
BO22144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24058401..24058799 | 17..415 | 99 | -> | Plus |
| 3R | 24058855..24059003 | 416..564 | 98 | -> | Plus |
| 3R | 24059062..24059230 | 565..733 | 97 | -> | Plus |
| 3R | 24059289..24060311 | 734..1756 | 99 | -> | Plus |
| 3R | 24060375..24060944 | 1757..2326 | 99 | -> | Plus |
| 3R | 24061011..24061266 | 2327..2582 | 99 | -> | Plus |
| 3R | 24061323..24061627 | 2583..2887 | 99 | -> | Plus |
| 3R | 24061691..24061791 | 2888..2988 | 100 | -> | Plus |
| 3R | 24061857..24062360 | 2989..3492 | 98 | -> | Plus |
| 3R | 24062421..24062598 | 3493..3670 | 99 | -> | Plus |
| 3R | 24062660..24062719 | 3671..3732 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:47 Download gff for
BO22144.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19886733..19886988 | 2327..2582 | 99 | -> | Plus |
| arm_3R | 19884123..19884521 | 17..415 | 99 | -> | Plus |
| arm_3R | 19884577..19884725 | 416..564 | 98 | -> | Plus |
| arm_3R | 19884784..19884952 | 565..733 | 97 | -> | Plus |
| arm_3R | 19885011..19886033 | 734..1756 | 99 | -> | Plus |
| arm_3R | 19886097..19886666 | 1757..2326 | 99 | -> | Plus |
| arm_3R | 19887045..19887349 | 2583..2887 | 99 | -> | Plus |
| arm_3R | 19887413..19887513 | 2888..2988 | 100 | -> | Plus |
| arm_3R | 19887579..19888082 | 2989..3492 | 98 | -> | Plus |
| arm_3R | 19888143..19888320 | 3493..3670 | 99 | -> | Plus |
| arm_3R | 19888382..19888441 | 3671..3732 | 96 | | Plus |
BO22144.pep Sequence
Translation from 16 to 3748
> BO22144.pep
MTEEDDDVAQRVATAPVRKPDDETAFLEYIEMENFKSYRGHIVVGPLKQF
NAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLNDLIHGSSIGKPVSRS
CYVTAKFVLNEERHMDFQRAVIGGSSEYRINGESVSSSTYLNKLEKIGIN
VKAKNFLVFQGAVENIAMKTPKERTALFEEISGSGLLKDDYNRLKQEMIV
AEEETQFTYQKKKGIAAERKEAKHEKMEADRYTRLQNEYNEKQVEYQLFR
LFHVERDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDL
AKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADN
AHQSDIRKLEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDR
LKQEAEATATQYRSELDSVNREQKSEQDTLDGETNRRASVEESFKKLTLQ
REEAVKRRDKLMDHIKSSQAALEEQNRIKDELRRDVGTSKEKIAEKQREL
EDVRDQLGDAKSDKHEDARRKKKQEVVELFKKQVPGVYDRMINMCQPTHK
RYNVAVTKVLGKFMEAIIVDTEKTARHCIQILKEQMLEVETFLPLDYLQV
KPLKERLRNISDPRNVRLVFDVLKFEPQEIERAVLFATGNALVCETPEDA
MKVAYEIDRSRFDALALDGTFYQKSGLISGGSHDLARKAKRWDEKHMAQL
KMQKERLQEELKELVKKSRKQSELATVESQIKGLENRLKYSMVDLESSKK
SISQYDNQLQQVQSQLDEFGPKILEIERRMQNREEHIQEIKENMNNVEDK
VYASFCRRLGVKNIRQYEERELVMQQERARKRAEFEQQIDSINSQLDFEK
QKDTKKNVERWERSVQDEEDALEGLKLAEARYLKEIDEDKEKMEKFKQDK
QAKKQAVDDMEEDISKARKDVANLAKEIHNVGSHLSAVESKIEAKKNERQ
NILLQAKTDCIVVPLLRGSLDDAVRQSDPDVPSTSAAMENIIEVDYSSLP
REYTKLKDDSAFKKTHEMLQKDLQSKLDVLERIQTPNMKALQKLDAVTEK
VQSTNEEFENARKKAKRAKAAFERVKNERSSRFVACCQHISDAIDGIYKK
LARNEAAQAYIGPDNPEEPYLDGINYNCVAPGKRFQPMNNLSGGEKTIAA
LALLFSTHSFHPAPFFVLDEIDAALDNTNIGKVASYIRDHTTNLQTIVIS
LKEEFYGHADALVGITPGEGDCLVSNVYIMDLTTFEDTASFLDH
BO22144.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMC1-PA | 1238 | CG6057-PA | 1..1238 | 1..1238 | 6248 | 100 | Plus |
| glu-PA | 1409 | CG11397-PA | 96..1280 | 34..1215 | 896 | 25.7 | Plus |
| SMC2-PA | 1179 | CG10212-PA | 2..1176 | 26..1234 | 601 | 22.2 | Plus |
| SMC3-PA | 1200 | CG9802-PA | 3..1194 | 27..1243 | 554 | 22.3 | Plus |
| zip-PG | 1971 | CG15792-PG | 968..1903 | 143..1074 | 265 | 20.2 | Plus |
