BO22149.complete Sequence
4315 bp assembled on 2010-02-01
GenBank Submission: KX798324
> BO22149.complete
GAAGTTATCAGTCGACATGCGAGCATTTTGCACCGTCAGCGCGCCTTTGG
AAGTATGCGCGTCCTCAGCCGAGCAACTATCACCAGGCTCGCGATTCCTG
GCCCTGAGACTTCTGGGGCAGCAGCAGCCGAAAACCTTGTACTTCCTAGT
CGATGCCAAGAGTCGAGTTCGAGAGGTTTACACGCAGACATGTCTGCACT
TTGCCACGCAAGGGATGCTGGACACCGAACTCTTCGGTCTGGCTGTGCTC
ATAGATGGCGAGTACATGTTCGCAGATCCCGAGAGCAAGCTCTCAAAATA
TGGCCCAAAGAGCTGGCGATCATCGCACACCCACGGGCTGGATGCCAACG
GACGACCGCTCCTGGAGCTACACTTTCGCGTGCAGTTCTACATCGAGAGC
CCGTTCATGCTGAAAGATGAGACGTCCCGCCATAATTACTACCTGCAGCT
GCGCCACAACATCTTGCAGCGCGATTTGCCGAGAGAACAGGCGGAGCAGG
CACTGGTCTTCCTTGCTGGACTTGCTCTTCAGGCGGACCTGGGTGATGCT
CCTCCGGGCACGAGTAATTCCAAGGATGATTCAGGAGAGGAGACATCGGC
ATCTCCTTCTAACGGAGGAAGAGGTCTAAGTGCCACCACTACATTACCCA
AGATCAGCAAACGTGCTAATGAGAGGATGCTTAGACTCTCGACATATGTG
GCGTCCACATCAAAGAGAGAAACAATACCATTACCACCCAGCCTGCCACC
GAATGGAGCAGATTACTACCGGATCGAGGATTACCTACCCAGTGGACTGC
ACACTCCCTGGGCGAGAAGTGCAATGAGAGCCTGTCATCGGGAGCATTTG
GGCATGGCCACGGCAGAGGCGGAGCTGCTATATATTCAACAGGCATGCAG
TCTTCATGAAACCATCAATGCCCATACCTACAGGATGCGATTGGCCAAAA
GCGAGCAGGGATCTGGTAGTGCCTGGTTTGTGGTCTATGCCAAGGGAATC
AAGATTCTGGGAGGAGAGTCTACCAACAGCTCTTCCAATCCCGAAACCAC
AACCTTTCTGTGGCCGAATATCACGAAGCTCTCCTTCGAGCGGAAAAAGT
TTGAAATACGATCTGGAGAGAGCCGAATCACCCTGTACGCCGCATCCGAT
GAGAAAAATAAACTCCTATTGACCCTCTGCAAGGATACACATCAGTGGAG
CATGAAACTGGCTGCCAGGCTAAAGGAGGTATCCAAACGCGAGGAGGAGG
AGGCTGCCGAATCACAAAGGCTACATGCCAGCTACGCTTGTTCCAGAAGT
CTGCTCTTGCCCTACAAAAGTAAAAACGAGCAGCGAATATCGGTTATCTC
GAGTACCAGCTCCAACACAACCTCTGGGATAGTAAGTGATCGAGTGCACT
CCGAAGACGAGCTGGAGATCATGATCAATACACCACCAGCACCCTTAGCT
GCTCCGTCAACGGAAAGTTTGGCCTTGGCTCATCTTTTGGACAGACCCAG
TGTGAGCAGACAAACTTCGAGCGTGGGTCAGATGTCTCTGAAGGATTTGG
AAGAACAACTGGCTGCCTTGAGTGTGAGGCCACAAGACGCGAGTTCTAAC
GGGGCCACGATCGTCACGAACTCCTCTGTTCAGAGAAATTCCATGGGAAC
AACTGCCAATGATTCATCTACCGCCACTGATTCACCCAGTTCGCAGCATA
ACATCGGCTCTCAGTGCTCATCCACTTGTAGCACTGTGGTGGTAACATCT
CCTGTAAATGGAGCAGGCGCTTCCTCTTCAGGTGCTCCCATACCTGTGCA
CTCCACTTCATCTAGTTTGGAGCTTGGCTTTAGTCACACCGCTCAAAACT
CGGCCTTGAGCGAAACGAGTCCCGACGATTTTCTCTCCACATCGGCAAGA
GAAGAAACGGAGAGTGTATCGGGCGCATCTGGGGTTTATACTTTGGCGCA
CGGAGCTCCACCCACGGAAACCTCAGGCGTTTACACCATGCACAGCAGTG
AGCTAACTGGACAATCATCGGAGATCGCCGAGTCGGAAAAGAGTTCGCAC
TACGGGATGTTCCAGCCCCAAAAACTAGAAGAAACCCACGTGCAACATTC
TGATTCCGTAGATGGAAAAAAGAAAGAAGACTTCAGACCGCGATCGGATT
CTAACGTCAGCACAGGGAGTTCCTTTAGAGGCGATGGCAGCGATCCAACA
GACAACAAACATTCCTTGCTCTCCGCAGAAGAGTTAACCAATTTGATTGT
GGGCAGGGGGACCTACCCCAGTCGGAAAACAGTATCTAGTAGCCTTCACT
CGGACTGTGATTACGTGACGTTACCACTAGGAGATCAAGGAGAAGAGGAG
GTAGACCAACCACCAGCACCACCACCACCCTACAGTGCTAGGCATGAGAA
AACTGGTCTCTGTGGCCCACCTATCGCCAAACCTATCCCTAAACCTATAG
CTGTGGTAGCTCCCAAACCAGATTCACCGCCATGTAGTCCACCGGTACCG
CCAGCACCAATTCCAGCCCCACCGCCGGCTATTCGACGAAGAGATCCACC
GCCATATTCCATCTCTAGCAAGCCTAGACCCACATCCCTGATATCTGTCA
GTTCGTCGGCACATCCTGCGCCCAGTGCTGCCGGCTCGATGAGTTCTTTA
AAGTCCGAGGAGGTTACAGCCAGATTTATCACCACCAGGCCACAGATTAG
TATTCTGAAAGCCCACACCAGCCTGATTCCCGATGGGGCCAAGCCAAGTT
ACGCGGCACCGCACCATTGTTCATCAGTTGCCTCCTCCAATGGATCGGTT
TGCAGCCATCAGTTGAGTCAGCAATCGCTGCATAACTCCAACTATGCCGG
CGGATCCCAGGCTTCACTGCACCATCATCACGTGCCGTCACACCACCGAC
ATTCTGGATCGGCAGCCATTGGAATAGTTCCTTACGGTCTGCACAAGAGC
ACGGCATCACTGCATCATCAGCAGTCATGTGTACTACTACCGGTTATTAA
ACCTCGGCAGTTCCTGGCACCACCACCGCCCAGTTTGCCGCGGCAGCCTC
CACCACCGCCCCCACCGAATCACCCCCATTTGGCGAGTCACCTTTACGAG
AGGGAAATGGCTAGAAAACAATTGGAGCTCTACCAGCAGCAGCTTTACAG
CGATGTGGATTACGTAATTTACCCCATCCAGGATCCAGCTGTAAGCCAGC
AAGAGTATCTGGATGCCAAACAGGGATCCTTACTGGCGGCAATGGCCCAA
GCAGCACCACCCCCACCGCACCACCCATATCTGGCCATGCAGGTGTCGCC
GGCGATTTACAGAAGCACCCCCTACCTACCACTGACTCTGTCGACCCACT
CACGATATGCATCCACCCAAAATCTATCGGATACATATGTGCAGCTTCCA
GGACCCGGATACTCACCCCTGTACTCTCCTTCGATGGCCAGCCTATGCTC
CTCGTATGAGCCTCCACCGCCTCCTCCCCTTCACCCGGCTGCTCTAGCAG
CAGCTGCTGCGGCGGGGGCTGGCTCCTCGTCTTCCTCGATGTTTGCGCGA
TCGCGATCAGATGACAATATTCTGAACTCACTAGATTTGCTGCCCAAGGG
AAAACGACTGCCACCGCCGCCACCACCACCGTATGTAAACAGACGGCTAA
AGAAACCACCCATGCCGGCGCCCAGTGAAAAGCCACCTCCAATACCCTCT
AAGCCAATTCCTAGCAGGATGAGCCCGATTCCACCACGAAAACCCCCAAC
GTTGAATCCGCATCATGCGAACTCACCGCTAACAAAGACCTCCAGCGGCG
CCCAGTGGGCAGGTGAGCGTCCGAGACCTGACTTGGGTCTTGGTCTGGGA
TTGAACCGGGGAAACAACAGCATTTTGGCCCAGCTGCAGGCTTCAATGGT
AGCCCAGTCTCATGCCCAGGCACAGGCCCAAGCGCTAGACATTGCGCTTC
TTCGGGAGAAGAGCAAGCATCTAGATCTGCCGCTGATCTCGGCGCTCTGC
AACGATCGCTCCTTGCTGAAACAGACTAAGGTTGTTATAAATCCGAAGAC
TGGCCAGGAGATGCCCACTTCCAGTGCGCAACCTTCAGGTGCCACCACAA
ATGGAGTTGCCAACTCCTCTGCAGGAGCAGGAACCCTAAGCAAGGCCAGA
AAAGGATCTACCGTAAGCCACCGTCATCCGCAGGACAAACTGCCGCCTTT
ACCTGTCCAACAATTGGCGGAGGCCAACAACTACGTGATCGATCCCGCTG
TCATGATGAAGCAACAGCAGCAGCAGCAGCAGCACAACAAGACCAGCGCA
AGCTTTCTAGACCAT
BO22149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ex-RB | 4284 | CG4114-PB | 1..4281 | 17..4297 | 21405 | 100 | Plus |
| ex-RA | 4284 | CG4114-PA | 1..4281 | 17..4297 | 21405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ex-RB | 6454 | CG4114-RB | 718..4999 | 16..4297 | 21410 | 100 | Plus |
| ex-RA | 6672 | CG4114-RA | 936..5217 | 16..4297 | 21410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 443226..446583 | 335..3692 | 16790 | 100 | Plus |
| 2L | 23513712 | 2L | 446642..447246 | 3693..4297 | 3025 | 100 | Plus |
| 2L | 23513712 | 2L | 438580..438727 | 107..254 | 740 | 100 | Plus |
| 2L | 23513712 | 2L | 438424..438516 | 16..108 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 443080..443162 | 253..335 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:56:58 has no hits.
BO22149.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:03:54 Download gff for
BO22149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ex-RA | 911..5191 | 17..4299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:31:07 Download gff for
BO22149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ex-RA | 937..5217 | 17..4299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:39:21 Download gff for
BO22149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ex-RA | 937..5217 | 17..4299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:39:21 Download gff for
BO22149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 438425..438516 | 17..108 | 100 | -> | Plus |
| 2L | 438582..438727 | 109..254 | 100 | -> | Plus |
| 2L | 443082..443161 | 255..334 | 100 | -> | Plus |
| 2L | 443226..446583 | 335..3692 | 100 | -> | Plus |
| 2L | 446642..447246 | 3693..4299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:31:07 Download gff for
BO22149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 438425..438516 | 17..108 | 100 | -> | Plus |
| arm_2L | 438582..438727 | 109..254 | 100 | -> | Plus |
| arm_2L | 443082..443161 | 255..334 | 100 | -> | Plus |
| arm_2L | 443226..446583 | 335..3692 | 100 | -> | Plus |
| arm_2L | 446642..447246 | 3693..4299 | 99 | | Plus |
BO22149.pep Sequence
Translation from 16 to 4315
> BO22149.pep
MRAFCTVSAPLEVCASSAEQLSPGSRFLALRLLGQQQPKTLYFLVDAKSR
VREVYTQTCLHFATQGMLDTELFGLAVLIDGEYMFADPESKLSKYGPKSW
RSSHTHGLDANGRPLLELHFRVQFYIESPFMLKDETSRHNYYLQLRHNIL
QRDLPREQAEQALVFLAGLALQADLGDAPPGTSNSKDDSGEETSASPSNG
GRGLSATTTLPKISKRANERMLRLSTYVASTSKRETIPLPPSLPPNGADY
YRIEDYLPSGLHTPWARSAMRACHREHLGMATAEAELLYIQQACSLHETI
NAHTYRMRLAKSEQGSGSAWFVVYAKGIKILGGESTNSSSNPETTTFLWP
NITKLSFERKKFEIRSGESRITLYAASDEKNKLLLTLCKDTHQWSMKLAA
RLKEVSKREEEEAAESQRLHASYACSRSLLLPYKSKNEQRISVISSTSSN
TTSGIVSDRVHSEDELEIMINTPPAPLAAPSTESLALAHLLDRPSVSRQT
SSVGQMSLKDLEEQLAALSVRPQDASSNGATIVTNSSVQRNSMGTTANDS
STATDSPSSQHNIGSQCSSTCSTVVVTSPVNGAGASSSGAPIPVHSTSSS
LELGFSHTAQNSALSETSPDDFLSTSAREETESVSGASGVYTLAHGAPPT
ETSGVYTMHSSELTGQSSEIAESEKSSHYGMFQPQKLEETHVQHSDSVDG
KKKEDFRPRSDSNVSTGSSFRGDGSDPTDNKHSLLSAEELTNLIVGRGTY
PSRKTVSSSLHSDCDYVTLPLGDQGEEEVDQPPAPPPPYSARHEKTGLCG
PPIAKPIPKPIAVVAPKPDSPPCSPPVPPAPIPAPPPAIRRRDPPPYSIS
SKPRPTSLISVSSSAHPAPSAAGSMSSLKSEEVTARFITTRPQISILKAH
TSLIPDGAKPSYAAPHHCSSVASSNGSVCSHQLSQQSLHNSNYAGGSQAS
LHHHHVPSHHRHSGSAAIGIVPYGLHKSTASLHHQQSCVLLPVIKPRQFL
APPPPSLPRQPPPPPPPNHPHLASHLYEREMARKQLELYQQQLYSDVDYV
IYPIQDPAVSQQEYLDAKQGSLLAAMAQAAPPPPHHPYLAMQVSPAIYRS
TPYLPLTLSTHSRYASTQNLSDTYVQLPGPGYSPLYSPSMASLCSSYEPP
PPPPLHPAALAAAAAAGAGSSSSSMFARSRSDDNILNSLDLLPKGKRLPP
PPPPPYVNRRLKKPPMPAPSEKPPPIPSKPIPSRMSPIPPRKPPTLNPHH
ANSPLTKTSSGAQWAGERPRPDLGLGLGLNRGNNSILAQLQASMVAQSHA
QAQAQALDIALLREKSKHLDLPLISALCNDRSLLKQTKVVINPKTGQEMP
TSSAQPSGATTNGVANSSAGAGTLSKARKGSTVSHRHPQDKLPPLPVQQL
AEANNYVIDPAVMMKQQQQQQQHNKTSASFLDH
BO22149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ex-PB | 1427 | CG4114-PB | 1..1427 | 1..1427 | 7408 | 100 | Plus |
| ex-PA | 1427 | CG4114-PA | 1..1427 | 1..1427 | 7408 | 100 | Plus |
| Hers-PI | 2529 | CG32529-PI | 1038..1526 | 853..1305 | 169 | 21.9 | Plus |
| Hers-PE | 2529 | CG32529-PE | 1038..1526 | 853..1305 | 169 | 21.9 | Plus |
| Hers-PA | 2529 | CG32529-PA | 1038..1526 | 853..1305 | 169 | 21.9 | Plus |
