BO22179.complete Sequence
1384 bp assembled on 2009-12-07
GenBank Submission: KX799608
> BO22179.complete
GAAGTTATCAGTCGACATGCGTGAATGTATCTCTATCCATGTTGGTCAGG
CTGGTGTCCAGATTGGAAACGCCTGCTGGGAGCTCTACTGCTTGGAGCAC
GGCATCCAGCCCGATGGCCAGATGCCGTCTGACAAGACCGTGGGCGGAGG
TGATGACTCGTTCAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACG
TGCCCCGCGCCGTGTTTGTGGATCTGGAACCCACTGTGGTCGATGAGGTC
CGTACCGGAACCTACCGTCAGCTGTTCCACCCTGAGCAGCTGATCACTGG
TAAGGAGGATGCGGCCAACAACTACGCCCGTGGCCACTACACCATCGGCA
AGGAGATCGTCGATCTGGTTCTGGACAGGATCCGCAAGCTGGCCGATCAG
TGCACCGGTCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTAC
CGGCTCCGGCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACG
GCAAGAAGTCCAAGCTGGAGTTCGCCATCTACCCAGCCCCCCAGGTGTCC
ACTGCCGTGGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCT
GGAGCATTCCGACTGCGCCTTCATGGTCGACAACGAGGCTATCTACGACA
TCTGCCGCCGCAACCTGGACATTGAGCGCCCCACGTACACCAACCTGAAC
CGTCTGATTGGCCAGATCGTGTCCTCGATTACCGCCTCTCTGCGATTCGA
TGGTGCCCTTAACGTGGATCTGACTGAGTTCCAGACCAACTTGGTGCCCT
ACCCACGTATTCACTTCCCTCTGGTGACCTACGCCCCCGTTATCTCCGCC
GAGAAGGCCTACCACGAGCAGCTGTCGGTGGCTGAGATCACCAACGCCTG
CTTCGAGCCGGCCAACCAGATGGTCAAGTGCGATCCCCGTCACGGCAAGT
ACATGGCCTGCTGCATGCTGTACCGCGGTGATGTTGTGCCCAAGGACGTC
AACGCCGCTATTGCCACCATCAAGACCAAGCGCACCATTCAATTCGTCGA
CTGGTGCCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCACCCACCG
TGGTGCCTGGAGGTGATTTGGCCAAGGTGCAGCGTGCCGTGTGCATGTTG
TCCAACACCACGGCCATCGCCGAGGCCTGGGCCCGTCTGGACCACAAGTT
CGATCTGATGTACGCCAAGCGTGCCTTCGTCCACTGGTACGTTGGTGAGG
GTATGGAGGAGGGAGAGTTCTCCGAGGCCCGTGAGGATTTGGCTGCCCTC
GAGAAGGACTACGAGGAGGTCGGCATGGACTCCGGTGACGGCGAGGGTGA
GGGCGCTGAGGAGTACGCAAGCTTTCTAGACCAT
BO22179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-RA | 1353 | CG1913-PA | 1..1350 | 17..1366 | 6720 | 99.9 | Plus |
| alphaTub84D-RA | 1353 | CG2512-PA | 1..1350 | 17..1366 | 5175 | 92.2 | Plus |
| alphaTub85E-RA | 1350 | CG9476-PA | 26..1317 | 42..1333 | 4045 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1493 | 17..1366 | 6720 | 99.9 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1856 | 17..1366 | 5175 | 92.2 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 128..1419 | 42..1333 | 4045 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7087233..7088580 | 19..1366 | 6710 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7531259..7532608 | 17..1366 | 5175 | 92.2 | Plus |
| 3R | 32079331 | 3R | 9731362..9732152 | 1333..543 | 2500 | 87.7 | Minus |
| 3R | 32079331 | 3R | 9732286..9732781 | 537..42 | 1565 | 87.7 | Minus |
| 3L | 28110227 | 3L | 9682200..9683246 | 284..1330 | 1155 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:08:04 has no hits.
BO22179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:44 Download gff for
BO22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 205..1554 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:57 Download gff for
BO22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 144..1493 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:56 Download gff for
BO22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 144..1493 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:56 Download gff for
BO22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7087232..7088580 | 17..1368 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:57 Download gff for
BO22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2912954..2914302 | 17..1368 | 99 | | Plus |
BO22179.pep Sequence
Translation from 16 to 1384
> BO22179.pep
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY
ASFLDH
BO22179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-PA | 450 | CG1913-PA | 1..450 | 1..450 | 2392 | 100 | Plus |
| alphaTub84D-PA | 450 | CG2512-PA | 1..450 | 1..450 | 2381 | 99.6 | Plus |
| alphaTub85E-PA | 449 | CG9476-PA | 1..449 | 1..450 | 2283 | 95.3 | Plus |
| alphaTub67C-PA | 462 | CG8308-PA | 1..462 | 1..453 | 1736 | 68.8 | Plus |
| CG7794-PA | 455 | CG7794-PA | 6..436 | 3..435 | 1279 | 53.6 | Plus |
