BO22241.complete Sequence
3676 bp assembled on 2010-01-08
GenBank Submission: KX797996
> BO22241.complete
GAAGTTATCAGTCGACATGGCCACACTAATACCAGTGAACGGCGGCCATC
CAGCAGCGAGCGGACAATCCTCCAATGTGGAGGCGACATATGAAGATATG
TTCAAGGAAATCACACGCAAATTGTACGGCGAGGAGACCGGAAACGGTTT
GCATACGCTCGGCACGCCGGTGGCGCAAGTGGCCACCAGCGGGCCAACAG
CGGTGCCCGAGGGCGAGCAGCGCTCCTTTACAAATCTGCAACAACTCGAT
CGCTCGGCAGCGCCCAGCATTGAATACGAGTCCAGTGCGGCCGGTGCCTC
TGGCAACAACGTGGCCACCACCCAGGCCAATGTAATCCAGCAACAACAAC
AGCAGCAACAGCAAGCGGAGTCGGGCAACTCCGTGGTGGTGACGGCCAGC
AGTGGGGCGACTGTGGTGCCGGCACCCAGTGTAGCGGCCGTTGGTGGCTT
CAAGTCCGAGGATCATCTGAGCACTGCCTTCGGGCTGGCAGCCCTGATGC
AGAACGGTTTCGCAGCCGGCCAGGCGGGTCTGCTGAAAGCCGGCGAGCAG
CAACAGCGCTGGGCTCAGGACGGATCTGGTCTGGTGGCGGCCGCAGCGGC
GGAACCACAACTCGTGCAGTGGACCTCGGGCGGAAAGCTCCAGAGCTACG
CTCATGTCAACCAACAGCAGCAGCAGCAACAACAGCCGCATCAGAGCACA
CCCAAGTCCAAAAAACACCGTCAGGAGCATGCGGCTGAATTGATCTACGC
CAGCCCCTCCACATCGGCCAATGCGGCCCAAAATCTGGCCCAATCCACAC
CCACCTCAGCGCCCAGCAACAGCAGTGGCGGCAGCACCAGCTCCTCCGGC
GGAGGAGGCGGTCGGAAGAAGGCCGCCCAAGCGGCTGCAGCTGCCGCTGC
GGCGAATGGAGTGCACATCCAGAAGCGTTACGCCTGTACGCACTGTCCAT
ACTCGACGGACCGGCGGGATCTGTACACCCGACATGAAAACATCCACAAG
GACGAGAAGCCCTTCCAGTGCTATGCCTGCCTCAAGCAGTTCAACCGAGC
CGATCATGTCAAGAAGCACTTCCTGCGCATGCACCGCGAGCTGCAGTACG
ACATTAACAAGACCCGGCGACATGTCTCCGCTGGCAGTGGTTCCTCGGGC
AGCGGGTCCTCTGGAAGCGGTTCTCATCACTCCGGCGGCCGTGGAAATGT
GACCATTAACTCGGCGGGCGTGAACATAGACAATGCCTTTTTGGAGGCCC
AACGACATCCCACCTCGAGCAGTATGAGCATTGTGGAGACCATCGAGGCA
GTGGCTTCGGCAACCGACATGCCGCTGGCCCAGCTTAAGCAGGAGAAAAT
GGACGATGGCGCCGGTGTGGTATTGCCCCTTCACGTGGGCGTTATGCAAC
AGCCGGTGGCCAGCTCGAGTTCCGGCAGCAGTGGCAGTCATGGTGGCAAC
GGAAACGGTGGCAGCGGCTCCGGCCTCCTGAAACCGAAGCGGGAGAAGCG
ATTCACCTGCTGCTACTGCCCGTGGTCTGGAGCGGACAAGTGGGGTCTCA
AGCGGCACCTCAATACGCATACAAAGCCCTTCGTTTGCCTGCTCTGCGAT
TACAAGGCGGCGCGTTCCGAGCGCCTGGCCACCCATGTGCTAAAGGTGCA
CAACAAGCGGGCCTGCAGCAAGTGCTCTTACTTGGCGGACACGCAGGAGG
AGTACCAGGCTCACATGAGCGATGTGCATGGCAATGTGGGAAATGCGAAT
GGAGGCGGCGGCGCCGTAACCATCTACACCACCACAACCAATGAGGGCGT
GGCCGGCGGCGGAGGAGGCGGTGGTGGCGGCATTAGCGGCAACATTTCCG
GCGGCGGACCGCTCCAGGAGATCATCGTGAATCCCTCGTCGATGGTCGGC
TGGCGGCTGAGCGCCAACGGATCGCTGATACCGCCGCACGATCTGCTAAC
CGGCGGATTGCCAAATGCAGCCACGCAAAAGCGCGGCTCGGAGCGATTGT
TTCAGTACCTCGAGGCCGAGGGCAGCGATCCGGAGGACTATGCGCGTCTG
CTGAAAATGGACGCCATTAGTCGCAACACCGCTTCGGTCGCTCAGGATTT
TCATAAGGCGGGAGGCGTGCACGAGTTGAAAATACCAGCCAATCATCAAC
TCCTGTTTAACAATAAACTGCCTTCGCAATGGACGACACGAGAGGCTGCT
GCACTGCTGTACAGCCTGAGCAACATGGGTGGCGGATCCGCCAGCTCCGT
TTCCGGATCCCAGCGCCAAAAGTTTGGCATGCGAGCGCGACAACATTCCA
CCGGTGAGGATGACGAGAATACACCATCGTCTGCATCTTCGTCGAGCTTC
TCTGGCGATGAGTTCAATATGAGCGCCACATCGCCATTGAAGCTGTCGCG
TCATGCCATCAAGCTGGAGAAGATGGATGAAATGGACGCCAAGGATATGG
GACCCACCAAGGCGATGATGGCAACGGCATTTCTAGAGGCGGCCAACTAC
GAGCAGACGGCCATCGAGCTGCTGGCCAGCAAACGGAAGATCAAGGTCGA
GAACGACAACGACGAGGACCAAGAGAATCAGCAGCATCAGCCCCATCAGC
AACATCACAGCCAGCAGCAGCAGCAGCAGCGATTGCAGCTTATTAAATCG
TCTCCCGCGTACAAATTGAACAACAACAATAACAACAATAGCAACAACAA
CAACTATTACAAGGACAAGACATCGCACAGAAATGCCGTTCACCATCATC
GCCAGGATGACAAGGAAAACAACAAGACCAAGTCGCCAGGCACAGCAGCA
GTAAGTGTTGCAGCTGCGGCAGCAACATCGCCGCCAAGCATCAGCGGCCC
CAGCAACCAGACTCCATTCCTCACCCAAATGGAGTACCAGAATCTCAATC
GCATTGGCACCCAGTTCCAGAACTACGTCAAGGACATTATCAACAAGTAC
TATGCGGCAGAGACGCCACTGATGTTGGCCGCTGCAGCAGCAGCTTTGCC
CACGGCCACGACTACAGGTCAGCAGCAACAGCCAGAGCTGGACATTGAGA
ACCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTAC
ATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAA
GGTTCAGCCACCAGCGCCGGTGACATCTCTGCTTAAACGGCAGTTGGATC
TCAGCACACCTCGTCGGAGTCCCAAGAAGGCGGCTCCGGCCCACAGCAAC
AGTGCCTCGAATGCCTCCCGCAAGTCCCTCAACCAGTTGGCCACCCTATT
GCCACTGCTTGCGGATGCGGCCAGTCAGCAAGAGTATCTCGCTGCACCGC
TGGACTTTAGCAAGAAGTCCAGCTCGCGCAAGCAGGCGCAGCCAAAGAAG
ATCCGCTTGACGCCCGAGGCGGTGGTCACCTTACTGAGGGACAAGTACCT
CAATCGCATGGTACGTCAGCGTTTGGGCTGCCTCAAGTGCAACCAGTTGC
GTAAGAACAGCTCTATCAGCTTCAACTACCACACTCTGGGATCGCTGGCT
CTGCACAAGTATTGGCGACATGGCCGGCTTGGATCCTCATCAACTAGGAG
AGAGAAGCTGCAGGCAGCTCTGCAGAAGAGGATTAGCCGAGGACAGGCGG
ACAAATGCGCAAGCTTTCTAGACCAT
BO22241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chn-RC | 3645 | CG11798-PC | 1..3642 | 17..3658 | 18210 | 100 | Plus |
| chn-RH | 3654 | CG11798-PH | 1..3651 | 17..3658 | 18085 | 99.8 | Plus |
| chn-RG | 3861 | CG11798-PG | 1929..3858 | 1729..3658 | 9650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chn-RC | 4393 | CG11798-RC | 567..4208 | 17..3658 | 18210 | 100 | Plus |
| chn-RH | 5459 | CG11798-RH | 474..4124 | 17..3658 | 18085 | 99.8 | Plus |
| chn-RI | 4468 | CG11798-RI | 2354..4283 | 1729..3658 | 9650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15141836..15143448 | 2046..3658 | 8065 | 100 | Plus |
| 2R | 25286936 | 2R | 15139079..15140095 | 712..1728 | 5085 | 100 | Plus |
| 2R | 25286936 | 2R | 15138508..15138981 | 238..711 | 2370 | 100 | Plus |
| 2R | 25286936 | 2R | 15140983..15141300 | 1729..2046 | 1590 | 100 | Plus |
| 2R | 25286936 | 2R | 15138215..15138436 | 17..238 | 1110 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2490 | 627..841 | 170 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6888 | 660..729 | 162 | 74.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2535 | 660..850 | 156 | 60.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1056..1131 | 657..729 | 156 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1487..1543 | 306..363 | 152 | 75.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6925 | 660..843 | 150 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6938 | 660..850 | 147 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6858 | 660..729 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1613 | 660..723 | 142 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2517 | 660..844 | 139 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2626..2685 | 660..719 | 138 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2550 | 660..819 | 136 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..6947 | 660..771 | 134 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2797..2877 | 660..738 | 130 | 64.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6582..6634 | 647..699 | 130 | 71.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8038..8090 | 647..699 | 130 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2339 | 338..364 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6751 | 338..364 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6772 | 338..364 | 126 | 96.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6793 | 338..364 | 126 | 96.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1143 | 660..698 | 125 | 82.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2663 | 304..364 | 124 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6837 | 660..729 | 124 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6873 | 660..761 | 124 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6842 | 338..379 | 122 | 79.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1007 | 658..694 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2534 | 660..825 | 121 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2413 | 338..363 | 121 | 96.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6813 | 338..363 | 121 | 96.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2359 | 338..363 | 121 | 96.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1140 | 338..363 | 121 | 96.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1128..1162 | 660..694 | 121 | 82.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2090..2133 | 662..705 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2550 | 660..715 | 120 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2843 | 303..370 | 120 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2828 | 338..370 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1582 | 304..363 | 119 | 71.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3587..3629 | 327..370 | 118 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2426 | 338..364 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6859 | 338..364 | 117 | 92.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6867..6902 | 660..695 | 117 | 80.6 | Plus |
BO22241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:46 Download gff for
BO22241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chn-RC | 546..4187 | 17..3660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:06 Download gff for
BO22241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chn-RC | 567..4208 | 17..3660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:41 Download gff for
BO22241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chn-RC | 567..4208 | 17..3660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:41 Download gff for
BO22241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15138215..15138436 | 17..238 | 100 | -> | Plus |
| 2R | 15138509..15138981 | 239..711 | 100 | -> | Plus |
| 2R | 15139079..15140095 | 712..1728 | 100 | -> | Plus |
| 2R | 15140983..15141300 | 1729..2046 | 100 | -> | Plus |
| 2R | 15141837..15143448 | 2047..3660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:06 Download gff for
BO22241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11025720..11025941 | 17..238 | 100 | -> | Plus |
| arm_2R | 11026014..11026486 | 239..711 | 100 | -> | Plus |
| arm_2R | 11026584..11027600 | 712..1728 | 100 | -> | Plus |
| arm_2R | 11028488..11028805 | 1729..2046 | 100 | -> | Plus |
| arm_2R | 11029342..11030953 | 2047..3660 | 99 | | Plus |
BO22241.pep Sequence
Translation from 16 to 3676
> BO22241.pep
MATLIPVNGGHPAASGQSSNVEATYEDMFKEITRKLYGEETGNGLHTLGT
PVAQVATSGPTAVPEGEQRSFTNLQQLDRSAAPSIEYESSAAGASGNNVA
TTQANVIQQQQQQQQQAESGNSVVVTASSGATVVPAPSVAAVGGFKSEDH
LSTAFGLAALMQNGFAAGQAGLLKAGEQQQRWAQDGSGLVAAAAAEPQLV
QWTSGGKLQSYAHVNQQQQQQQQPHQSTPKSKKHRQEHAAELIYASPSTS
ANAAQNLAQSTPTSAPSNSSGGSTSSSGGGGGRKKAAQAAAAAAAANGVH
IQKRYACTHCPYSTDRRDLYTRHENIHKDEKPFQCYACLKQFNRADHVKK
HFLRMHRELQYDINKTRRHVSAGSGSSGSGSSGSGSHHSGGRGNVTINSA
GVNIDNAFLEAQRHPTSSSMSIVETIEAVASATDMPLAQLKQEKMDDGAG
VVLPLHVGVMQQPVASSSSGSSGSHGGNGNGGSGSGLLKPKREKRFTCCY
CPWSGADKWGLKRHLNTHTKPFVCLLCDYKAARSERLATHVLKVHNKRAC
SKCSYLADTQEEYQAHMSDVHGNVGNANGGGGAVTIYTTTTNEGVAGGGG
GGGGGISGNISGGGPLQEIIVNPSSMVGWRLSANGSLIPPHDLLTGGLPN
AATQKRGSERLFQYLEAEGSDPEDYARLLKMDAISRNTASVAQDFHKAGG
VHELKIPANHQLLFNNKLPSQWTTREAAALLYSLSNMGGGSASSVSGSQR
QKFGMRARQHSTGEDDENTPSSASSSSFSGDEFNMSATSPLKLSRHAIKL
EKMDEMDAKDMGPTKAMMATAFLEAANYEQTAIELLASKRKIKVENDNDE
DQENQQHQPHQQHHSQQQQQQRLQLIKSSPAYKLNNNNNNNSNNNNYYKD
KTSHRNAVHHHRQDDKENNKTKSPGTAAVSVAAAAATSPPSISGPSNQTP
FLTQMEYQNLNRIGTQFQNYVKDIINKYYAAETPLMLAAAAAALPTATTT
GQQQQPELDIENLSPSKRRRLLSETEEYIEYLRNKEDITLTIAPKVQPPA
PVTSLLKRQLDLSTPRRSPKKAAPAHSNSASNASRKSLNQLATLLPLLAD
AASQQEYLAAPLDFSKKSSSRKQAQPKKIRLTPEAVVTLLRDKYLNRMVR
QRLGCLKCNQLRKNSSISFNYHTLGSLALHKYWRHGRLGSSSTRREKLQA
ALQKRISRGQADKCASFLDH
BO22241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chn-PC | 1214 | CG11798-PC | 1..1214 | 1..1214 | 6263 | 100 | Plus |
| chn-PH | 1217 | CG11798-PH | 1..1217 | 1..1214 | 6249 | 99.8 | Plus |
| chn-PE | 1283 | CG11798-PE | 1..1283 | 1..1214 | 6051 | 93.1 | Plus |
| chn-PG | 1286 | CG11798-PG | 1..1286 | 1..1214 | 5803 | 90.4 | Plus |
| chn-PF | 1286 | CG11798-PF | 1..1286 | 1..1214 | 5803 | 90.4 | Plus |
